Wall clock time and date at job start Tue Mar 31 2020 09:55:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42895 * 109.47318 * 2 1 4 4 C 1.42903 * 114.00075 * 179.97438 * 3 2 1 5 5 H 1.08996 * 115.54962 * 355.67039 * 4 3 2 6 6 C 1.53000 * 117.51808 * 141.36906 * 4 3 2 7 7 C 1.52995 * 117.49809 * 209.99642 * 4 3 2 8 8 H 1.09000 * 117.50272 * 0.02562 * 7 4 3 9 9 N 1.46904 * 117.49750 * 145.00116 * 7 4 3 10 10 C 1.46899 * 111.00029 * 205.00179 * 9 7 4 11 11 C 1.50703 * 109.47107 * 179.97438 * 10 9 7 12 12 C 1.38285 * 119.97192 * 269.72249 * 11 10 9 13 13 C 1.38241 * 120.11346 * 179.76704 * 12 11 10 14 14 C 1.38164 * 120.05382 * 0.50891 * 13 12 11 15 15 C 1.38715 * 119.94436 * 359.74559 * 14 13 12 16 16 O 1.35904 * 120.05603 * 180.02562 * 15 14 13 17 17 C 1.42897 * 117.00032 * 359.97438 * 16 15 14 18 18 C 1.52997 * 109.47189 * 180.02562 * 17 16 15 19 19 C 1.50701 * 109.47169 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00031 * 359.97438 * 19 18 17 21 21 C 1.37872 * 119.99928 * 180.02562 * 19 18 17 22 22 N 1.31513 * 120.00250 * 359.97438 * 21 19 18 23 23 Si 1.86805 * 120.00298 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46647 * 0.02562 * 23 21 19 25 25 H 1.48493 * 109.47129 * 119.99681 * 23 21 19 26 26 H 1.48493 * 109.47142 * 240.00365 * 23 21 19 27 27 C 1.38119 * 119.97319 * 89.99993 * 11 10 9 28 28 H 1.08993 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08995 * 109.47295 * 300.00663 * 1 2 3 30 30 H 1.09010 * 109.46584 * 60.00548 * 1 2 3 31 31 H 1.09004 * 109.47579 * 239.99372 * 2 1 3 32 32 H 1.09003 * 109.46814 * 120.00088 * 2 1 3 33 33 H 1.09003 * 117.50019 * 359.97438 * 6 4 3 34 34 H 1.08996 * 117.50040 * 214.97475 * 6 4 3 35 35 H 1.00902 * 111.00190 * 81.03879 * 9 7 4 36 36 H 1.09002 * 109.47043 * 299.99792 * 10 9 7 37 37 H 1.09001 * 109.47354 * 59.99854 * 10 9 7 38 38 H 1.08009 * 119.94314 * 0.02562 * 12 11 10 39 39 H 1.08004 * 119.97435 * 180.25862 * 13 12 11 40 40 H 1.08007 * 120.02900 * 179.72647 * 14 13 12 41 41 H 1.09003 * 109.47130 * 300.00356 * 17 16 15 42 42 H 1.09005 * 109.47448 * 59.99694 * 17 16 15 43 43 H 1.09002 * 109.46977 * 299.99739 * 18 17 16 44 44 H 1.08997 * 109.47049 * 59.99654 * 18 17 16 45 45 H 0.96996 * 120.00418 * 180.02562 * 22 21 19 46 46 H 1.08002 * 120.02570 * 359.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 1 3.9769 0.5196 0.0752 6 6 4.0523 2.5724 -0.8464 7 6 4.0421 2.6875 0.6791 8 1 3.3576 3.4089 1.1255 9 7 5.3199 2.5085 1.3814 10 6 5.4889 3.5201 2.4331 11 6 6.8075 3.3046 3.1302 12 6 6.8761 2.4821 4.2396 13 6 8.0850 2.2785 4.8785 14 6 9.2262 2.9051 4.4159 15 6 9.1591 3.7349 3.3063 16 8 10.2803 4.3520 2.8491 17 6 11.4943 4.1017 3.5599 18 6 12.6387 4.8767 2.9037 19 6 13.9192 4.6122 3.6530 20 1 13.9169 3.9571 4.5116 21 6 15.0933 5.2072 3.2430 22 7 15.0960 6.0053 2.1977 23 14 16.6805 4.8799 4.1721 24 1 16.4111 3.9533 5.3008 25 1 17.6736 4.2660 3.2546 26 1 17.2184 6.1597 4.6993 27 6 7.9454 3.9334 2.6638 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.3745 3.2182 -1.4047 34 1 5.0071 2.3638 -1.3291 35 1 6.0938 2.5268 0.7342 36 1 5.4716 4.5145 1.9869 37 1 4.6776 3.4320 3.1557 38 1 5.9843 1.9945 4.6052 39 1 8.1368 1.6323 5.7423 40 1 10.1697 2.7493 4.9180 41 1 11.3830 4.4257 4.5947 42 1 11.7165 3.0348 3.5353 43 1 12.7502 4.5530 1.8688 44 1 12.4163 5.9435 2.9288 45 1 15.9221 6.4237 1.9090 46 1 7.8905 4.5790 1.7997 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567065418.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:52 Heat of formation + Delta-G solvation = -61.446049 kcal Electronic energy + Delta-G solvation = -23203.475240 eV Core-core repulsion = 19672.117159 eV Total energy + Delta-G solvation = -3531.358080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.09337 -39.82612 -38.78910 -37.30298 -35.49608 -34.55533 -32.58834 -31.91229 -31.08260 -30.42908 -27.11495 -26.05137 -23.77245 -23.51457 -23.32263 -23.04557 -22.23558 -21.53568 -19.16229 -18.24237 -18.03953 -17.06827 -16.94605 -16.88291 -16.66149 -16.44341 -16.35484 -15.87070 -15.46160 -15.17437 -14.39241 -14.34840 -14.30343 -14.12644 -13.77940 -13.59859 -13.45972 -13.11519 -13.03897 -12.98479 -12.92197 -12.61157 -12.54713 -12.34142 -12.14796 -11.98958 -11.78167 -11.67700 -11.58216 -11.55516 -11.37149 -10.63634 -10.24516 -9.87258 -9.20272 -9.09248 -8.27598 -6.41359 0.32257 0.54062 1.40770 1.41591 1.55113 2.25875 2.35463 2.51090 2.79741 2.87393 3.06983 3.40258 3.82109 3.90632 3.93252 3.94489 4.09643 4.18192 4.20792 4.22944 4.26089 4.31333 4.41446 4.45479 4.49278 4.55551 4.56954 4.64646 4.73020 4.79191 4.83035 4.87997 4.99659 5.03562 5.11147 5.27656 5.31054 5.42380 5.45807 5.52513 5.63818 5.67787 5.87846 5.96176 6.07104 6.28422 6.32409 6.56784 6.73615 7.29010 8.85674 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.030333 B = 0.001857 C = 0.001798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 922.854663 B =15073.716099 C =15567.673842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.052 3.948 3 O -0.379 6.379 4 C 0.025 3.975 5 H 0.117 0.883 6 C -0.201 4.201 7 C 0.022 3.978 8 H 0.115 0.885 9 N -0.656 5.656 10 C 0.109 3.891 11 C -0.047 4.047 12 C -0.140 4.140 13 C -0.079 4.079 14 C -0.221 4.221 15 C 0.106 3.894 16 O -0.342 6.342 17 C 0.085 3.915 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.002 3.998 22 N -0.931 5.931 23 Si 0.976 3.024 24 H -0.258 1.258 25 H -0.277 1.277 26 H -0.277 1.277 27 C -0.162 4.162 28 H 0.090 0.910 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.348 0.652 36 H 0.049 0.951 37 H 0.097 0.903 38 H 0.147 0.853 39 H 0.150 0.850 40 H 0.126 0.874 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.267 0.733 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.685 -11.934 -0.895 30.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.298 6.298 4 C -0.035 4.035 5 H 0.134 0.866 6 C -0.240 4.240 7 C -0.088 4.088 8 H 0.133 0.867 9 N -0.287 5.287 10 C -0.019 4.019 11 C -0.047 4.047 12 C -0.158 4.158 13 C -0.097 4.097 14 C -0.240 4.240 15 C 0.061 3.939 16 O -0.256 6.256 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.584 4.584 20 H 0.089 0.911 21 C -0.196 4.196 22 N -0.570 5.570 23 Si 0.800 3.200 24 H -0.181 1.181 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.181 4.181 28 H 0.109 0.891 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.121 0.879 34 H 0.129 0.871 35 H 0.168 0.832 36 H 0.067 0.933 37 H 0.115 0.885 38 H 0.165 0.835 39 H 0.168 0.832 40 H 0.144 0.856 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.017 0.983 44 H 0.017 0.983 45 H 0.076 0.924 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -27.929 -12.012 -0.722 30.411 hybrid contribution 1.636 0.763 -0.371 1.843 sum -26.293 -11.249 -1.093 28.619 Atomic orbital electron populations 1.21773 0.92745 1.03481 1.02700 1.22717 0.96268 0.82546 1.00911 1.87780 1.19379 1.28366 1.94239 1.23052 0.81492 0.95172 1.03743 0.86574 1.24082 1.03136 1.02612 0.94184 1.22853 0.93476 1.00172 0.92337 0.86743 1.60125 1.03067 1.49912 1.15597 1.20878 0.93700 0.93452 0.93838 1.19627 0.93704 0.95752 0.95634 1.21174 0.98499 0.99791 0.96351 1.21242 0.91369 0.97569 0.99513 1.21512 1.01202 1.02402 0.98906 1.19486 0.87163 0.93191 0.94094 1.86078 1.16350 1.67294 1.55894 1.22847 0.81018 0.99834 0.95220 1.18971 0.91555 0.94679 0.95742 1.21435 0.93189 1.29402 1.14410 0.91124 1.26035 1.03321 0.94341 0.95942 1.70123 1.28882 1.31387 1.26582 0.85231 0.77863 0.78340 0.78589 1.18133 1.20227 1.20226 1.20439 0.90100 1.05045 1.02548 0.89097 0.92289 0.92224 0.92471 0.92626 0.87918 0.87096 0.83200 0.93313 0.88474 0.83507 0.83219 0.85585 0.92276 0.92259 0.98310 0.98327 0.92445 0.85690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.49 10.28 71.98 0.74 -0.75 16 2 C 0.05 0.66 6.53 71.98 0.47 1.13 16 3 O -0.38 -6.87 10.60 -148.98 -1.58 -8.45 16 4 C 0.02 0.40 6.37 30.59 0.19 0.60 16 5 H 0.12 1.77 7.93 -2.39 -0.02 1.75 16 6 C -0.20 -2.97 10.18 30.59 0.31 -2.66 16 7 C 0.02 0.36 6.26 44.91 0.28 0.65 16 8 H 0.11 1.86 7.90 -2.39 -0.02 1.84 16 9 N -0.66 -11.48 6.77 -495.58 -3.35 -14.83 16 10 C 0.11 1.95 5.66 85.56 0.48 2.43 16 11 C -0.05 -1.08 5.39 -19.88 -0.11 -1.18 16 12 C -0.14 -3.01 9.70 22.28 0.22 -2.80 16 13 C -0.08 -1.87 10.04 22.25 0.22 -1.65 16 14 C -0.22 -6.76 9.04 22.37 0.20 -6.55 16 15 C 0.11 3.72 6.69 22.51 0.15 3.87 16 16 O -0.34 -14.63 10.14 -92.47 -0.94 -15.57 16 17 C 0.09 3.77 4.68 71.98 0.34 4.11 16 18 C 0.03 1.53 5.34 29.85 0.16 1.69 16 19 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 20 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 21 C 0.00 0.12 5.46 84.65 0.46 0.59 16 22 N -0.93 -56.68 13.29 21.45 0.28 -56.40 16 23 Si 0.98 43.52 29.54 68.60 2.03 45.54 16 24 H -0.26 -10.80 7.11 99.48 0.71 -10.10 16 25 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 C -0.16 -4.75 9.64 22.36 0.22 -4.54 16 28 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 31 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.64 16 33 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.11 1.47 8.09 -2.39 -0.02 1.45 16 35 H 0.35 6.21 8.51 -89.69 -0.76 5.45 16 36 H 0.05 0.84 8.09 -2.39 -0.02 0.82 16 37 H 0.10 1.49 8.08 -2.39 -0.02 1.47 16 38 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 39 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 40 H 0.13 3.84 6.30 -2.91 -0.02 3.82 16 41 H 0.06 2.47 7.66 -2.39 -0.02 2.45 16 42 H 0.06 2.47 7.66 -2.38 -0.02 2.46 16 43 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 44 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 45 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 46 H 0.13 3.54 8.06 -2.91 -0.02 3.51 16 Total: -1.00 -67.14 387.58 1.20 -65.94 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: 0.19 Total: 19.60 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.57 Total: -35.84 kcal Atomic # 7 Polarization: -68.16 SS G_CDS: -3.07 Total: -71.23 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -2.52 Total: -24.01 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.14 1.20 -65.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567065418.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.491 kcal (2) G-P(sol) polarization free energy of solvation -67.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds