Wall clock time and date at job start Tue Mar 31 2020 09:55:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42900 * 109.47105 * 2 1 4 4 C 1.42901 * 113.99877 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55988 * 4.30233 * 4 3 2 6 6 C 1.53007 * 117.49568 * 218.62132 * 4 3 2 7 7 C 1.52998 * 117.49892 * 150.00130 * 4 3 2 8 8 H 1.09001 * 117.51772 * 0.02562 * 7 4 3 9 9 N 1.46905 * 117.49754 * 214.97665 * 7 4 3 10 10 C 1.46891 * 110.99957 * 154.98555 * 9 7 4 11 11 C 1.50702 * 109.47037 * 179.97438 * 10 9 7 12 12 C 1.38282 * 119.97237 * 269.97697 * 11 10 9 13 13 C 1.38250 * 120.10863 * 179.72325 * 12 11 10 14 14 C 1.38161 * 120.05761 * 0.55702 * 13 12 11 15 15 C 1.38714 * 119.94312 * 359.46537 * 14 13 12 16 16 O 1.35891 * 120.05888 * 180.23608 * 15 14 13 17 17 C 1.42901 * 116.99958 * 359.97438 * 16 15 14 18 18 C 1.52999 * 109.47195 * 180.02562 * 17 16 15 19 19 C 1.50706 * 109.47241 * 180.02562 * 18 17 16 20 20 H 1.08000 * 119.99511 * 359.97438 * 19 18 17 21 21 C 1.37873 * 120.00220 * 179.97438 * 19 18 17 22 22 N 1.31521 * 119.99862 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00099 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47129 * 59.99506 * 23 21 19 25 25 H 1.48502 * 109.46964 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.46735 * 299.99743 * 23 21 19 27 27 C 1.38123 * 119.96824 * 90.00253 * 11 10 9 28 28 H 1.08998 * 109.46954 * 60.00369 * 1 2 3 29 29 H 1.09006 * 109.46936 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47213 * 299.99908 * 1 2 3 31 31 H 1.09003 * 109.46845 * 239.99987 * 2 1 3 32 32 H 1.09007 * 109.46888 * 119.99847 * 2 1 3 33 33 H 1.08997 * 117.49891 * 145.01361 * 6 4 3 34 34 H 1.08998 * 117.49710 * 359.97438 * 6 4 3 35 35 H 1.00903 * 110.99779 * 31.02774 * 9 7 4 36 36 H 1.09003 * 109.47515 * 59.99676 * 10 9 7 37 37 H 1.09000 * 109.47458 * 299.99980 * 10 9 7 38 38 H 1.08001 * 119.94786 * 0.02562 * 12 11 10 39 39 H 1.07998 * 119.96884 * 180.27470 * 13 12 11 40 40 H 1.08002 * 120.03267 * 179.75019 * 14 13 12 41 41 H 1.09006 * 109.47006 * 300.00237 * 17 16 15 42 42 H 1.08997 * 109.47361 * 60.00360 * 17 16 15 43 43 H 1.09006 * 109.47004 * 299.99830 * 18 17 16 44 44 H 1.08999 * 109.47695 * 60.00009 * 18 17 16 45 45 H 0.96999 * 119.99704 * 179.97438 * 22 21 19 46 46 H 1.07992 * 120.03265 * 0.02562 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5197 -0.0747 6 6 4.0518 2.5728 0.8465 7 6 4.0421 2.6876 -0.6792 8 1 3.3578 3.4096 -1.1249 9 7 5.3202 2.5087 -1.3810 10 6 5.4892 3.5199 -2.4330 11 6 6.8086 3.3052 -3.1288 12 6 7.9468 3.9364 -2.6614 13 6 9.1597 3.7370 -3.2941 14 6 9.2354 2.9153 -4.4022 15 6 8.0950 2.2814 -4.8733 16 8 8.1676 1.4689 -5.9601 17 6 9.4510 1.3132 -6.5691 18 6 9.3354 0.3703 -7.7685 19 6 10.6889 0.2056 -8.4104 20 1 11.5457 0.7222 -8.0037 21 6 10.8333 -0.6045 -9.5166 22 7 9.7899 -1.2340 -10.0114 23 14 12.5112 -0.8092 -10.3118 24 1 13.4613 -1.3792 -9.3231 25 1 12.3989 -1.7243 -11.4759 26 1 13.0070 0.5139 -10.7688 27 6 6.8798 2.4786 -4.2330 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8899 31 1 1.8933 -0.5139 -0.8900 32 1 1.8934 -0.5138 0.8901 33 1 5.0064 2.3645 1.3295 34 1 3.3736 3.2190 1.4038 35 1 5.3974 1.5765 -1.7595 36 1 5.4714 4.5144 -1.9873 37 1 4.6782 3.4312 -3.1558 38 1 7.8890 4.5823 -1.7978 39 1 10.0480 4.2276 -2.9245 40 1 10.1824 2.7630 -4.8986 41 1 9.8141 2.2846 -6.9048 42 1 10.1490 0.8952 -5.8439 43 1 8.9721 -0.6012 -7.4331 44 1 8.6374 0.7886 -8.4937 45 1 9.8915 -1.8037 -10.7899 46 1 5.9906 1.9866 -4.5981 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567065419.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:55:58 Heat of formation + Delta-G solvation = -61.241361 kcal Electronic energy + Delta-G solvation = -23279.064402 eV Core-core repulsion = 19747.715198 eV Total energy + Delta-G solvation = -3531.349204 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.09734 -39.84034 -38.79538 -37.26405 -35.49723 -34.58523 -32.59104 -31.92057 -31.11756 -30.44862 -27.11952 -26.09062 -23.80102 -23.52513 -23.34340 -22.99561 -22.15716 -21.53808 -19.17181 -18.26346 -18.04636 -17.12605 -16.95332 -16.90657 -16.71623 -16.47236 -16.36303 -15.75070 -15.55808 -15.14732 -14.40186 -14.33595 -14.29687 -14.24786 -13.87343 -13.55672 -13.47581 -13.14047 -13.04068 -12.97618 -12.77733 -12.57734 -12.56805 -12.33499 -12.18000 -11.94699 -11.81089 -11.63365 -11.59321 -11.56204 -11.39055 -10.62432 -10.24915 -9.82939 -9.31528 -9.09735 -8.27529 -6.41466 0.32036 0.53940 1.40347 1.44379 1.52385 2.25557 2.37208 2.51158 2.76399 2.85735 3.06687 3.31880 3.80615 3.86254 3.90575 4.05955 4.07403 4.15123 4.21213 4.23097 4.25691 4.31102 4.39256 4.44267 4.46423 4.52353 4.56721 4.64816 4.72529 4.78911 4.82691 4.96292 5.00077 5.05895 5.10827 5.24486 5.30399 5.42123 5.45265 5.52444 5.63628 5.67327 5.88146 5.96606 6.06752 6.20391 6.31481 6.56411 6.73056 7.28654 8.85339 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016700 B = 0.002101 C = 0.001902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.239705 B =13324.189066 C =14719.749321 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.379 6.379 4 C 0.003 3.997 5 H 0.119 0.881 6 C -0.160 4.160 7 C 0.013 3.987 8 H 0.105 0.895 9 N -0.652 5.652 10 C 0.109 3.891 11 C -0.047 4.047 12 C -0.138 4.138 13 C -0.079 4.079 14 C -0.221 4.221 15 C 0.106 3.894 16 O -0.342 6.342 17 C 0.085 3.915 18 C 0.028 3.972 19 C -0.547 4.547 20 H 0.071 0.929 21 C 0.001 3.999 22 N -0.931 5.931 23 Si 0.977 3.023 24 H -0.263 1.263 25 H -0.282 1.282 26 H -0.264 1.264 27 C -0.163 4.163 28 H 0.056 0.944 29 H 0.089 0.911 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.344 0.656 36 H 0.099 0.901 37 H 0.045 0.955 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.059 0.941 43 H -0.002 1.002 44 H -0.002 1.002 45 H 0.267 0.733 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.465 8.678 23.374 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.298 6.298 4 C -0.056 4.056 5 H 0.136 0.864 6 C -0.199 4.199 7 C -0.097 4.097 8 H 0.122 0.878 9 N -0.283 5.283 10 C -0.020 4.020 11 C -0.047 4.047 12 C -0.157 4.157 13 C -0.097 4.097 14 C -0.240 4.240 15 C 0.061 3.939 16 O -0.257 6.257 17 C 0.011 3.989 18 C -0.009 4.009 19 C -0.585 4.585 20 H 0.089 0.911 21 C -0.198 4.198 22 N -0.570 5.570 23 Si 0.800 3.200 24 H -0.188 1.188 25 H -0.208 1.208 26 H -0.188 1.188 27 C -0.183 4.183 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.129 0.871 34 H 0.122 0.878 35 H 0.164 0.836 36 H 0.118 0.882 37 H 0.063 0.937 38 H 0.167 0.833 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.078 0.922 42 H 0.078 0.922 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.076 0.924 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -12.457 8.952 23.591 28.140 hybrid contribution 0.325 -0.995 -1.604 1.915 sum -12.131 7.958 21.987 26.342 Atomic orbital electron populations 1.21774 0.92778 1.03469 1.02730 1.22724 0.96330 0.82595 1.00904 1.87807 1.19407 1.28251 1.94331 1.23288 0.81722 0.94883 1.05723 0.86375 1.23758 1.02182 1.00599 0.93336 1.22897 0.91231 1.00560 0.95031 0.87754 1.60381 1.30896 1.07266 1.29769 1.20890 0.92058 0.97162 0.91841 1.19624 0.96342 0.95342 0.93401 1.21181 0.91428 1.01895 1.01183 1.21253 0.99172 0.95863 0.93374 1.21514 0.97826 1.03164 1.01514 1.19479 0.95477 0.91354 0.87614 1.86076 1.35061 1.63066 1.41485 1.22849 0.81746 0.99683 0.94639 1.18965 0.97053 0.93443 0.91438 1.21371 0.94543 1.29160 1.13430 0.91091 1.26060 1.01563 0.94767 0.97391 1.70118 1.32166 1.30578 1.24125 0.85327 0.78342 0.78546 0.77792 1.18809 1.20759 1.18832 1.20433 0.95616 1.03677 0.98541 0.92493 0.89191 0.91934 0.92938 0.92154 0.87132 0.87798 0.83610 0.88229 0.93700 0.83341 0.83149 0.85556 0.92250 0.92229 0.98356 0.98374 0.92428 0.85899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 10.28 71.98 0.74 -0.95 16 2 C 0.05 0.70 6.53 71.98 0.47 1.17 16 3 O -0.38 -7.02 10.60 -148.98 -1.58 -8.60 16 4 C 0.00 0.05 6.24 30.60 0.19 0.24 16 5 H 0.12 1.69 7.93 -2.39 -0.02 1.67 16 6 C -0.16 -2.34 10.41 30.60 0.32 -2.02 16 7 C 0.01 0.22 6.20 44.91 0.28 0.50 16 8 H 0.10 1.75 7.90 -2.39 -0.02 1.73 16 9 N -0.65 -11.50 6.73 -495.58 -3.34 -14.84 16 10 C 0.11 1.96 5.66 85.56 0.48 2.45 16 11 C -0.05 -1.08 5.39 -19.88 -0.11 -1.19 16 12 C -0.14 -2.97 9.70 22.28 0.22 -2.76 16 13 C -0.08 -1.86 10.04 22.25 0.22 -1.64 16 14 C -0.22 -6.76 9.04 22.37 0.20 -6.56 16 15 C 0.11 3.74 6.69 22.51 0.15 3.89 16 16 O -0.34 -14.73 10.14 -92.33 -0.94 -15.67 16 17 C 0.09 3.78 4.68 71.98 0.34 4.11 16 18 C 0.03 1.56 5.34 29.85 0.16 1.72 16 19 C -0.55 -31.05 9.11 25.60 0.23 -30.81 16 20 H 0.07 3.74 7.74 -2.91 -0.02 3.72 16 21 C 0.00 0.04 5.46 84.65 0.46 0.51 16 22 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 23 Si 0.98 43.52 29.54 68.60 2.03 45.54 16 24 H -0.26 -11.17 7.11 99.48 0.71 -10.46 16 25 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 26 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 27 C -0.16 -4.85 9.64 22.37 0.22 -4.63 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.09 0.68 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 33 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.34 6.33 8.68 -89.69 -0.78 5.55 16 36 H 0.10 1.52 8.08 -2.39 -0.02 1.50 16 37 H 0.04 0.81 8.09 -2.39 -0.02 0.79 16 38 H 0.15 2.37 8.06 -2.91 -0.02 2.35 16 39 H 0.15 2.63 8.06 -2.91 -0.02 2.60 16 40 H 0.13 3.84 6.30 -2.91 -0.02 3.82 16 41 H 0.06 2.48 7.66 -2.38 -0.02 2.46 16 42 H 0.06 2.49 7.66 -2.39 -0.02 2.47 16 43 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 44 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 45 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 46 H 0.12 3.55 8.06 -2.91 -0.02 3.53 16 Total: -1.00 -67.16 387.82 1.21 -65.95 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: 0.17 Total: 20.14 kcal Atomic # 6 Polarization: -40.56 SS G_CDS: 4.57 Total: -35.98 kcal Atomic # 7 Polarization: -68.33 SS G_CDS: -3.05 Total: -71.39 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: -2.51 Total: -24.26 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Total: -67.16 1.21 -65.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567065419.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.709 kcal (2) G-P(sol) polarization free energy of solvation -67.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds