Wall clock time and date at job start Tue Mar 31 2020 09:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47212 * 2 1 4 4 C 1.42907 * 113.99838 * 180.02562 * 3 2 1 5 5 H 1.08999 * 115.55885 * 4.30952 * 4 3 2 6 6 C 1.52999 * 117.49471 * 218.62412 * 4 3 2 7 7 C 1.52998 * 117.49600 * 150.00376 * 4 3 2 8 8 H 1.09002 * 117.51100 * 214.96517 * 7 4 3 9 9 N 1.46896 * 117.50389 * 359.97438 * 7 4 3 10 10 C 1.46900 * 111.00452 * 200.88016 * 9 7 4 11 11 H 1.09003 * 109.46441 * 326.48501 * 10 9 7 12 12 C 1.53001 * 109.47161 * 86.48442 * 10 9 7 13 13 C 1.50698 * 109.47097 * 185.82071 * 12 10 9 14 14 H 1.08007 * 119.99794 * 3.92612 * 13 12 10 15 15 C 1.37870 * 120.00134 * 183.92687 * 13 12 10 16 16 N 1.31519 * 120.00124 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.47039 * 90.00250 * 17 15 13 19 19 H 1.48509 * 109.46852 * 210.00120 * 17 15 13 20 20 H 1.48497 * 109.47146 * 330.00131 * 17 15 13 21 21 C 1.50692 * 109.47153 * 206.48622 * 10 9 7 22 22 C 1.38271 * 119.94828 * 139.99798 * 21 10 9 23 23 C 1.38140 * 120.06158 * 179.97438 * 22 21 10 24 24 C 1.38736 * 119.94160 * 359.97438 * 23 22 21 25 25 O 1.35899 * 120.05498 * 179.97438 * 24 23 22 26 26 C 1.42896 * 117.00082 * 180.02562 * 25 24 23 27 27 C 1.38731 * 119.88976 * 0.27679 * 24 23 22 28 28 C 1.38150 * 119.94420 * 359.42708 * 27 24 23 29 29 H 1.08994 * 109.47262 * 59.99287 * 1 2 3 30 30 H 1.09004 * 109.47385 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46672 * 299.99882 * 1 2 3 32 32 H 1.09005 * 109.46672 * 240.00118 * 2 1 3 33 33 H 1.08998 * 109.47738 * 120.00793 * 2 1 3 34 34 H 1.09004 * 117.49901 * 145.01914 * 6 4 3 35 35 H 1.09007 * 117.52053 * 359.97438 * 6 4 3 36 36 H 1.00909 * 111.00006 * 324.83516 * 9 7 4 37 37 H 1.08998 * 109.46724 * 305.81975 * 12 10 9 38 38 H 1.08997 * 109.47368 * 65.81601 * 12 10 9 39 39 H 0.96994 * 120.00176 * 180.02562 * 16 15 13 40 40 H 1.08001 * 119.96378 * 359.97438 * 22 21 10 41 41 H 1.07992 * 120.03111 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47430 * 300.00680 * 26 25 24 43 43 H 1.09001 * 109.46985 * 60.00503 * 26 25 24 44 44 H 1.08997 * 109.47671 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.03154 * 179.71460 * 27 24 23 46 46 H 1.07997 * 119.97731 * 180.27477 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 -0.0006 5 1 3.9771 0.5197 -0.0748 6 6 4.0517 2.5727 0.8465 7 6 4.0420 2.6876 -0.6792 8 1 4.9905 2.5552 -1.1998 9 7 3.1196 3.6598 -1.2807 10 6 3.8042 4.4822 -2.2872 11 1 4.8394 4.6398 -1.9844 12 6 3.7715 3.7662 -3.6389 13 6 4.5947 4.5391 -4.6368 14 1 5.1430 5.4148 -4.3218 15 6 4.6481 4.1286 -5.9519 16 7 3.9801 3.0626 -6.3356 17 14 5.6679 5.0871 -7.1890 18 1 7.0483 4.5406 -7.2220 19 1 5.0550 4.9652 -8.5362 20 1 5.7112 6.5175 -6.7925 21 6 3.1076 5.8131 -2.4067 22 6 3.8502 6.9700 -2.5550 23 6 3.2140 8.1912 -2.6653 24 6 1.8287 8.2562 -2.6277 25 8 1.2004 9.4565 -2.7354 26 6 -0.2277 9.4477 -2.6880 27 6 1.0860 7.0946 -2.4735 28 6 1.7268 5.8751 -2.3698 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8932 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 5.0065 2.3643 1.3295 35 1 3.3738 3.2191 1.4040 36 1 2.3154 3.1974 -1.6778 37 1 4.1824 2.7627 -3.5285 38 1 2.7419 3.7005 -3.9904 39 1 4.0179 2.7735 -7.2607 40 1 4.9286 6.9187 -2.5846 41 1 3.7944 9.0945 -2.7815 42 1 -0.6148 8.8400 -3.5059 43 1 -0.5571 9.0292 -1.7370 44 1 -0.6008 10.4673 -2.7853 45 1 0.0077 7.1431 -2.4393 46 1 1.1490 4.9701 -2.2543 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572587964.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:17 Heat of formation + Delta-G solvation = -33.692736 kcal Electronic energy + Delta-G solvation = -25097.638547 eV Core-core repulsion = 21567.483941 eV Total energy + Delta-G solvation = -3530.154606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.68023 -38.69654 -37.52077 -35.88621 -34.06176 -32.35606 -30.73295 -30.48292 -29.37172 -28.07339 -26.92896 -24.03842 -22.85965 -22.36458 -21.92306 -21.67891 -20.58451 -19.63967 -17.73585 -17.01223 -16.25752 -16.01478 -15.54701 -15.43108 -15.42396 -14.70949 -14.42213 -14.27877 -13.87508 -13.48098 -13.12701 -12.98069 -12.59540 -12.55567 -12.51068 -12.30612 -12.21138 -11.87945 -11.74917 -11.56609 -11.21546 -11.13441 -10.92381 -10.89994 -10.77007 -10.52214 -10.40178 -10.21296 -9.93715 -9.73029 -9.19897 -8.86489 -8.39694 -8.33190 -7.70560 -7.33891 -6.01108 -4.02896 1.99382 2.10644 3.31592 3.38518 3.42843 3.57176 3.62375 4.11185 4.36811 4.45653 4.63078 5.02565 5.08794 5.11944 5.16961 5.29098 5.32399 5.35329 5.36554 5.42856 5.46387 5.49784 5.57226 5.61754 5.81891 5.85164 5.88883 5.94355 5.98863 6.07897 6.09033 6.15355 6.28276 6.32107 6.66139 6.69619 6.85203 6.95981 7.27485 7.33704 7.37721 7.49446 7.58842 7.77471 7.87464 7.98995 8.01906 8.39012 9.01878 9.61135 11.09895 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.007969 B = 0.005235 C = 0.003655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3512.735986 B = 5347.589194 C = 7659.365867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.347 6.347 4 C 0.004 3.996 5 H 0.104 0.896 6 C -0.181 4.181 7 C 0.035 3.965 8 H 0.104 0.896 9 N -0.651 5.651 10 C 0.125 3.875 11 H 0.074 0.926 12 C 0.007 3.993 13 C -0.510 4.510 14 H 0.059 0.941 15 C 0.059 3.941 16 N -0.896 5.896 17 Si 0.887 3.113 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.272 1.272 21 C -0.053 4.053 22 C -0.069 4.069 23 C -0.153 4.153 24 C 0.102 3.898 25 O -0.325 6.325 26 C 0.031 3.969 27 C -0.209 4.209 28 C -0.064 4.064 29 H 0.065 0.935 30 H 0.068 0.932 31 H 0.061 0.939 32 H 0.049 0.951 33 H 0.045 0.955 34 H 0.094 0.906 35 H 0.102 0.898 36 H 0.347 0.653 37 H 0.015 0.985 38 H 0.023 0.977 39 H 0.259 0.741 40 H 0.124 0.876 41 H 0.121 0.879 42 H 0.052 0.948 43 H 0.051 0.949 44 H 0.092 0.908 45 H 0.117 0.883 46 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.877 0.361 12.474 13.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.266 6.266 4 C -0.055 4.055 5 H 0.122 0.878 6 C -0.220 4.220 7 C -0.077 4.077 8 H 0.121 0.879 9 N -0.281 5.281 10 C 0.016 3.984 11 H 0.092 0.908 12 C -0.032 4.032 13 C -0.549 4.549 14 H 0.077 0.923 15 C -0.142 4.142 16 N -0.535 5.535 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.213 1.213 20 H -0.197 1.197 21 C -0.054 4.054 22 C -0.087 4.087 23 C -0.172 4.172 24 C 0.058 3.942 25 O -0.240 6.240 26 C -0.065 4.065 27 C -0.228 4.228 28 C -0.082 4.082 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.167 0.833 37 H 0.033 0.967 38 H 0.041 0.959 39 H 0.069 0.931 40 H 0.142 0.858 41 H 0.139 0.861 42 H 0.071 0.929 43 H 0.069 0.931 44 H 0.110 0.890 45 H 0.135 0.865 46 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.912 1.065 12.793 14.133 hybrid contribution 0.502 -0.591 -1.635 1.809 sum -5.410 0.474 11.158 12.410 Atomic orbital electron populations 1.21733 0.93824 1.02011 1.03251 1.22492 0.95471 0.84001 0.99891 1.87855 1.18684 1.25870 1.94152 1.23003 0.82110 0.94077 1.06303 0.87792 1.23622 1.01650 1.01597 0.95132 1.22821 0.97453 0.93425 0.93997 0.87877 1.60222 1.08840 1.23179 1.35881 1.20763 0.95481 0.89811 0.92302 0.90769 1.19721 0.98038 0.95100 0.90304 1.21108 1.28641 1.11706 0.93452 0.92328 1.24971 0.95695 0.95061 0.98474 1.69957 1.42026 1.24400 1.17153 0.86658 0.80282 0.80692 0.80853 1.20753 1.21321 1.19666 1.19594 0.93172 0.94531 0.98123 1.20751 0.99688 0.90911 0.97396 1.20245 0.91080 0.98432 1.07437 1.18888 0.92206 0.83891 0.99181 1.85999 1.20522 1.28528 1.88904 1.22928 0.79335 1.03046 1.01141 1.21057 0.99211 0.92748 1.09761 1.20617 0.94255 0.96369 0.96962 0.91580 0.91312 0.91996 0.93258 0.93666 0.88761 0.88003 0.83268 0.96727 0.95910 0.93097 0.85835 0.86147 0.92928 0.93057 0.88975 0.86465 0.86407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.13 16 2 C 0.06 0.67 6.53 37.16 0.24 0.91 16 3 O -0.35 -5.10 9.89 -35.23 -0.35 -5.45 16 4 C 0.00 0.06 6.42 -26.73 -0.17 -0.11 16 5 H 0.10 1.24 7.93 -51.93 -0.41 0.83 16 6 C -0.18 -2.45 10.41 -26.73 -0.28 -2.72 16 7 C 0.03 0.55 5.92 -67.72 -0.40 0.15 16 8 H 0.10 1.69 7.81 -51.93 -0.41 1.28 16 9 N -0.65 -11.69 5.82 -100.96 -0.59 -12.28 16 10 C 0.13 2.53 2.11 -68.87 -0.15 2.39 16 11 H 0.07 1.51 7.59 -51.93 -0.39 1.12 16 12 C 0.01 0.16 4.41 -27.88 -0.12 0.04 16 13 C -0.51 -13.84 8.55 -34.44 -0.29 -14.13 16 14 H 0.06 1.54 6.74 -52.48 -0.35 1.19 16 15 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 16 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 17 Si 0.89 21.65 29.54 -169.99 -5.02 16.63 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 21 C -0.05 -1.06 4.50 -104.60 -0.47 -1.54 16 22 C -0.07 -1.32 8.80 -39.61 -0.35 -1.67 16 23 C -0.15 -2.77 9.99 -39.43 -0.39 -3.16 16 24 C 0.10 1.82 6.69 -39.22 -0.26 1.55 16 25 O -0.33 -5.20 10.50 -19.42 -0.20 -5.40 16 26 C 0.03 0.35 9.81 101.05 0.99 1.35 16 27 C -0.21 -3.62 9.04 -39.43 -0.36 -3.97 16 28 C -0.06 -1.20 9.31 -39.60 -0.37 -1.57 16 29 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.10 1.47 8.14 -51.92 -0.42 1.05 16 36 H 0.35 6.49 7.33 -39.29 -0.29 6.20 16 37 H 0.01 0.38 8.04 -51.93 -0.42 -0.04 16 38 H 0.02 0.61 8.13 -51.93 -0.42 0.19 16 39 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 40 H 0.12 2.23 7.83 -52.49 -0.41 1.81 16 41 H 0.12 1.94 8.06 -52.49 -0.42 1.52 16 42 H 0.05 0.58 7.67 -51.93 -0.40 0.19 16 43 H 0.05 0.53 7.65 -51.93 -0.40 0.13 16 44 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.12 1.71 6.30 -52.49 -0.33 1.38 16 46 H 0.12 2.13 7.29 -52.49 -0.38 1.75 16 LS Contribution 380.38 15.07 5.73 5.73 Total: -1.00 -31.00 380.38 -9.34 -40.34 By element: Atomic # 1 Polarization: 15.82 SS G_CDS: -7.55 Total: 8.26 kcal Atomic # 6 Polarization: -19.95 SS G_CDS: -2.09 Total: -22.05 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.15 Total: -38.07 kcal Atomic # 8 Polarization: -10.30 SS G_CDS: -0.55 Total: -10.85 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.00 -9.34 -40.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572587964.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.648 kcal (2) G-P(sol) polarization free energy of solvation -31.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds