Wall clock time and date at job start Tue Mar 31 2020 09:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42906 * 109.47321 * 2 1 4 4 C 1.42896 * 114.00468 * 180.02562 * 3 2 1 5 5 H 1.09004 * 115.54699 * 4.32712 * 4 3 2 6 6 C 1.52994 * 117.49907 * 218.62403 * 4 3 2 7 7 C 1.52995 * 117.50116 * 149.99805 * 4 3 2 8 8 H 1.09004 * 117.50087 * 214.99951 * 7 4 3 9 9 N 1.46902 * 117.49807 * 0.02562 * 7 4 3 10 10 C 1.46900 * 110.99788 * 204.99642 * 9 7 4 11 11 H 1.09000 * 109.47293 * 35.00540 * 10 9 7 12 12 C 1.52996 * 109.47217 * 275.00178 * 10 9 7 13 13 C 1.50700 * 109.47241 * 65.00192 * 12 10 9 14 14 H 1.07994 * 119.99909 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99753 * 180.02562 * 13 12 10 16 16 N 1.31515 * 120.00028 * 359.97438 * 15 13 12 17 17 Si 1.86797 * 119.99708 * 180.02562 * 15 13 12 18 18 H 1.48509 * 109.47294 * 59.99780 * 17 15 13 19 19 H 1.48505 * 109.47035 * 179.97438 * 17 15 13 20 20 H 1.48493 * 109.47341 * 299.99805 * 17 15 13 21 21 C 1.50701 * 109.46921 * 155.00018 * 10 9 7 22 22 C 1.38265 * 119.94124 * 39.72792 * 21 10 9 23 23 C 1.38153 * 120.05540 * 179.72231 * 22 21 10 24 24 C 1.38737 * 119.93854 * 0.57273 * 23 22 21 25 25 O 1.35903 * 120.05315 * 179.67671 * 24 23 22 26 26 C 1.42897 * 116.99862 * 0.02641 * 25 24 23 27 27 C 1.38734 * 119.89088 * 359.70166 * 24 23 22 28 28 C 1.38147 * 119.94261 * 0.02562 * 27 24 23 29 29 H 1.09002 * 109.47153 * 299.99798 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99970 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00174 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00202 * 2 1 3 34 34 H 1.08998 * 117.50123 * 0.02562 * 6 4 3 35 35 H 1.08999 * 117.49717 * 145.01802 * 6 4 3 36 36 H 1.00897 * 110.99875 * 328.95337 * 9 7 4 37 37 H 1.09009 * 109.47136 * 185.00365 * 12 10 9 38 38 H 1.09009 * 109.47120 * 304.99809 * 12 10 9 39 39 H 0.97006 * 119.99698 * 180.02562 * 16 15 13 40 40 H 1.07998 * 119.97610 * 359.97438 * 22 21 10 41 41 H 1.07993 * 120.02987 * 180.25090 * 23 22 21 42 42 H 1.09000 * 109.47427 * 59.99443 * 26 25 24 43 43 H 1.09003 * 109.47391 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.47230 * 299.99225 * 26 25 24 45 45 H 1.07998 * 120.02820 * 180.02562 * 27 24 23 46 46 H 1.07997 * 119.97211 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4602 -0.0006 5 1 3.9769 0.5198 -0.0752 6 6 4.0517 2.5728 0.8464 7 6 4.0420 2.6877 -0.6792 8 1 4.9902 2.5549 -1.2003 9 7 3.1194 3.6603 -1.2799 10 6 3.7773 4.4160 -2.3541 11 1 4.4781 3.7665 -2.8787 12 6 4.5335 5.6028 -1.7536 13 6 5.6520 5.0958 -0.8801 14 1 5.8077 4.0334 -0.7645 15 6 6.4759 5.9884 -0.2277 16 7 6.2860 7.2821 -0.3682 17 14 7.8627 5.3599 0.8544 18 1 8.7952 4.5412 0.0385 19 1 8.5966 6.5119 1.4373 20 1 7.2995 4.5270 1.9471 21 6 2.7386 4.9202 -3.3225 22 6 1.5308 5.4005 -2.8509 23 6 0.5791 5.8686 -3.7362 24 6 0.8315 5.8455 -5.1002 25 8 -0.1057 6.2993 -5.9735 26 6 -1.3284 6.7870 -5.4175 27 6 2.0418 5.3578 -5.5712 28 6 2.9924 4.8961 -4.6814 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.3736 3.2184 1.4045 35 1 5.0064 2.3645 1.3294 36 1 2.2839 3.2059 -1.6167 37 1 4.9474 6.2136 -2.5561 38 1 3.8492 6.2044 -1.1552 39 1 6.8659 7.9100 0.0906 40 1 1.3328 5.4135 -1.7893 41 1 -0.3624 6.2474 -3.3671 42 1 -1.1168 7.6250 -4.7533 43 1 -1.9865 7.1179 -6.2210 44 1 -1.8145 5.9906 -4.8541 45 1 2.2408 5.3391 -6.6326 46 1 3.9350 4.5167 -5.0476 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572587965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:56:21 Heat of formation + Delta-G solvation = -26.411917 kcal Electronic energy + Delta-G solvation = -25183.078665 eV Core-core repulsion = 21653.239778 eV Total energy + Delta-G solvation = -3529.838886 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.91054 -38.61195 -37.62771 -35.88517 -33.82449 -32.27094 -30.74659 -30.69035 -29.36027 -28.15652 -27.13207 -24.24538 -22.84177 -22.40807 -21.72226 -21.60921 -20.47198 -19.56945 -17.92957 -16.76397 -16.57700 -15.91443 -15.62514 -15.52407 -15.31316 -14.57425 -14.39298 -14.22185 -13.99364 -13.70739 -13.24773 -13.04316 -12.70719 -12.57320 -12.49968 -12.34639 -12.17163 -11.85779 -11.61176 -11.37556 -11.22685 -11.04513 -11.00559 -10.80678 -10.71530 -10.54176 -10.47307 -10.31871 -9.83806 -9.42956 -9.04454 -8.64128 -8.57172 -8.23891 -7.70309 -7.40365 -5.87596 -3.86653 1.70095 1.80152 3.37220 3.41461 3.42686 3.43264 3.67820 4.12778 4.39337 4.54335 4.74281 5.00440 5.03295 5.12590 5.14513 5.15622 5.26244 5.29205 5.32477 5.42360 5.47307 5.50825 5.54370 5.70117 5.73181 5.81150 5.84561 5.88744 6.01356 6.02551 6.09339 6.25366 6.37781 6.45641 6.60413 6.65620 6.72290 6.89945 7.08360 7.12305 7.44805 7.60714 7.64853 7.81219 8.06323 8.16328 8.23130 8.55645 9.16313 9.74248 11.24173 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.008452 B = 0.005268 C = 0.003462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3311.955976 B = 5313.857893 C = 8084.724898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.349 6.349 4 C -0.021 4.021 5 H 0.099 0.901 6 C -0.162 4.162 7 C 0.062 3.938 8 H 0.107 0.893 9 N -0.634 5.634 10 C 0.134 3.866 11 H 0.040 0.960 12 C 0.041 3.959 13 C -0.502 4.502 14 H 0.061 0.939 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.883 3.117 18 H -0.280 1.280 19 H -0.290 1.290 20 H -0.277 1.277 21 C -0.104 4.104 22 C -0.060 4.060 23 C -0.209 4.209 24 C 0.109 3.891 25 O -0.324 6.324 26 C 0.029 3.971 27 C -0.154 4.154 28 C -0.079 4.079 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.045 0.955 33 H 0.044 0.956 34 H 0.102 0.898 35 H 0.092 0.908 36 H 0.334 0.666 37 H 0.016 0.984 38 H 0.026 0.974 39 H 0.258 0.742 40 H 0.134 0.866 41 H 0.122 0.878 42 H 0.054 0.946 43 H 0.094 0.906 44 H 0.052 0.948 45 H 0.124 0.876 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.785 -10.210 -5.388 17.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.018 4.018 3 O -0.267 6.267 4 C -0.080 4.080 5 H 0.117 0.883 6 C -0.201 4.201 7 C -0.049 4.049 8 H 0.124 0.876 9 N -0.265 5.265 10 C 0.025 3.975 11 H 0.058 0.942 12 C 0.004 3.996 13 C -0.541 4.541 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.538 5.538 17 Si 0.712 3.288 18 H -0.206 1.206 19 H -0.216 1.216 20 H -0.203 1.203 21 C -0.105 4.105 22 C -0.079 4.079 23 C -0.227 4.227 24 C 0.064 3.936 25 O -0.238 6.238 26 C -0.066 4.066 27 C -0.173 4.173 28 C -0.097 4.097 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.082 0.918 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.120 0.880 35 H 0.110 0.890 36 H 0.154 0.846 37 H 0.034 0.966 38 H 0.044 0.956 39 H 0.067 0.933 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.071 0.929 45 H 0.142 0.858 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -12.732 -9.376 -5.075 16.606 hybrid contribution 0.911 -0.935 0.323 1.345 sum -11.821 -10.311 -4.752 16.390 Atomic orbital electron populations 1.21731 0.94010 1.01827 1.03199 1.22443 0.95280 0.84443 0.99634 1.87851 1.19241 1.25337 1.94311 1.23411 0.81521 0.94374 1.08708 0.88347 1.23466 1.01215 0.99758 0.95622 1.22797 0.96119 0.90790 0.95207 0.87565 1.60018 1.06683 1.26083 1.33734 1.20802 0.91436 0.97146 0.88096 0.94224 1.19112 0.94153 0.90983 0.95362 1.21260 1.12602 0.92908 1.27302 0.92100 1.24946 0.97619 0.94850 0.96913 1.69961 1.39069 1.00953 1.43808 0.86802 0.82632 0.78232 0.81156 1.20594 1.21577 1.20256 1.20235 0.95667 1.00625 0.93957 1.20917 0.92161 0.94785 1.00006 1.21202 1.01567 1.07793 0.92177 1.18976 0.89613 0.96422 0.88540 1.86015 1.25740 1.77329 1.34686 1.22974 0.84633 0.98693 1.00285 1.20290 0.92238 1.04679 1.00060 1.20871 0.98220 0.98197 0.92443 0.91865 0.91472 0.91849 0.93708 0.93768 0.87964 0.89003 0.84634 0.96603 0.95598 0.93256 0.84858 0.86016 0.92745 0.88747 0.92896 0.85823 0.85619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.46 10.28 37.16 0.38 -1.08 16 2 C 0.06 0.67 6.53 37.16 0.24 0.92 16 3 O -0.35 -5.31 9.80 -35.23 -0.35 -5.66 16 4 C -0.02 -0.32 6.42 -26.74 -0.17 -0.49 16 5 H 0.10 1.28 7.93 -51.93 -0.41 0.87 16 6 C -0.16 -2.88 10.39 -26.73 -0.28 -3.16 16 7 C 0.06 1.13 4.15 -67.71 -0.28 0.85 16 8 H 0.11 2.00 6.22 -51.93 -0.32 1.68 16 9 N -0.63 -12.09 5.83 -100.95 -0.59 -12.68 16 10 C 0.13 2.71 2.42 -68.87 -0.17 2.55 16 11 H 0.04 0.80 7.43 -51.93 -0.39 0.42 16 12 C 0.04 1.05 4.63 -27.88 -0.13 0.92 16 13 C -0.50 -13.54 8.39 -34.44 -0.29 -13.82 16 14 H 0.06 1.55 4.68 -52.49 -0.25 1.30 16 15 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 16 N -0.90 -27.04 13.29 55.43 0.74 -26.31 16 17 Si 0.88 21.50 29.54 -169.99 -5.02 16.48 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C -0.10 -1.89 4.72 -104.60 -0.49 -2.39 16 22 C -0.06 -1.04 8.99 -39.60 -0.36 -1.40 16 23 C -0.21 -3.19 9.04 -39.43 -0.36 -3.55 16 24 C 0.11 1.68 6.69 -39.21 -0.26 1.42 16 25 O -0.32 -4.51 10.50 -19.43 -0.20 -4.71 16 26 C 0.03 0.29 9.81 101.05 0.99 1.28 16 27 C -0.15 -2.38 9.99 -39.43 -0.39 -2.78 16 28 C -0.08 -1.30 9.66 -39.61 -0.38 -1.68 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 34 H 0.10 1.97 8.14 -51.93 -0.42 1.55 16 35 H 0.09 1.57 8.14 -51.93 -0.42 1.14 16 36 H 0.33 5.95 7.30 -39.29 -0.29 5.67 16 37 H 0.02 0.44 8.14 -51.92 -0.42 0.01 16 38 H 0.03 0.73 8.14 -51.92 -0.42 0.30 16 39 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 40 H 0.13 2.35 7.70 -52.49 -0.40 1.94 16 41 H 0.12 1.56 6.30 -52.49 -0.33 1.23 16 42 H 0.05 0.51 7.66 -51.93 -0.40 0.11 16 43 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 45 H 0.12 1.67 8.06 -52.49 -0.42 1.24 16 46 H 0.13 1.89 8.03 -52.49 -0.42 1.47 16 LS Contribution 376.55 15.07 5.67 5.67 Total: -1.00 -31.14 376.55 -9.18 -40.32 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -7.39 Total: 7.78 kcal Atomic # 6 Polarization: -18.86 SS G_CDS: -2.04 Total: -20.90 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.15 Total: -38.99 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: -0.55 Total: -10.37 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -31.14 -9.18 -40.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572587965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.910 kcal (2) G-P(sol) polarization free energy of solvation -31.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.322 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds