Wall clock time and date at job start Tue Mar 31 2020 09:59:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42906 * 109.47252 * 2 1 4 4 C 1.42892 * 114.00206 * 180.02562 * 3 2 1 5 5 H 1.08997 * 109.47473 * 30.00185 * 4 3 2 6 6 C 1.50698 * 109.47155 * 150.00311 * 4 3 2 7 7 O 1.21283 * 120.00145 * 15.61776 * 6 4 3 8 8 N 1.34773 * 119.99920 * 195.62445 * 6 4 3 9 9 C 1.46507 * 120.00118 * 185.28400 * 8 6 4 10 10 C 1.50701 * 109.47074 * 89.99886 * 9 8 6 11 11 H 1.07998 * 119.99640 * 0.02562 * 10 9 8 12 12 C 1.37869 * 120.00134 * 180.02562 * 10 9 8 13 13 N 1.31513 * 120.00061 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00288 * 179.97438 * 12 10 9 15 15 H 1.48506 * 109.46962 * 359.97438 * 14 12 10 16 16 H 1.48504 * 109.47535 * 119.99849 * 14 12 10 17 17 H 1.48499 * 109.47305 * 240.00343 * 14 12 10 18 18 C 1.46504 * 120.00264 * 5.28059 * 8 6 4 19 19 C 1.53000 * 109.46769 * 116.19144 * 18 8 6 20 20 C 1.52995 * 109.47543 * 236.19062 * 18 8 6 21 21 C 1.50702 * 109.47168 * 270.00124 * 4 3 2 22 22 C 1.38237 * 119.99993 * 314.83125 * 21 4 3 23 23 C 1.38233 * 120.00063 * 179.80560 * 22 21 4 24 24 C 1.38233 * 119.99992 * 0.40534 * 23 22 21 25 25 C 1.38238 * 120.00160 * 359.84680 * 24 23 22 26 26 C 1.38232 * 120.00017 * 135.10290 * 21 4 3 27 27 H 1.08995 * 109.47233 * 300.00004 * 1 2 3 28 28 H 1.08999 * 109.47026 * 60.00124 * 1 2 3 29 29 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47295 * 240.00422 * 2 1 3 31 31 H 1.09005 * 109.47433 * 119.99927 * 2 1 3 32 32 H 1.08992 * 109.47293 * 209.99694 * 9 8 6 33 33 H 1.08997 * 109.46954 * 330.00015 * 9 8 6 34 34 H 0.97006 * 120.00210 * 180.02562 * 13 12 10 35 35 H 1.08996 * 109.46720 * 356.19789 * 18 8 6 36 36 H 1.08997 * 109.47628 * 60.00140 * 19 18 8 37 37 H 1.09003 * 109.47477 * 180.02562 * 19 18 8 38 38 H 1.08999 * 109.47427 * 300.00024 * 19 18 8 39 39 H 1.09001 * 109.46916 * 60.00047 * 20 18 8 40 40 H 1.08999 * 109.47268 * 179.97438 * 20 18 8 41 41 H 1.09003 * 109.47082 * 300.00247 * 20 18 8 42 42 H 1.08001 * 119.99642 * 0.02562 * 22 21 4 43 43 H 1.08004 * 119.99774 * 180.22573 * 23 22 21 44 44 H 1.07995 * 120.00095 * 179.83081 * 24 23 22 45 45 H 1.07997 * 120.00074 * 179.97438 * 25 24 23 46 46 H 1.07994 * 120.00225 * 359.97438 * 26 21 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 1 3.8631 0.6018 -0.5147 6 6 3.8341 2.7266 -0.7109 7 8 3.0115 3.5929 -0.9200 8 7 5.1089 2.8964 -1.1140 9 6 5.5282 4.1721 -1.6998 10 6 6.0165 5.0896 -0.6086 11 1 6.0151 4.7557 0.4185 12 6 6.4650 6.3552 -0.9214 13 7 6.4673 6.7616 -2.1722 14 14 7.0696 7.4928 0.4312 15 1 6.9650 6.8027 1.7420 16 1 8.4862 7.8575 0.1750 17 1 6.2378 8.7228 0.4522 18 6 6.0755 1.8054 -0.9662 19 6 6.5509 1.3546 -2.3489 20 6 7.2735 2.2925 -0.1488 21 6 3.9322 1.4996 1.4200 22 6 3.3020 2.3012 2.3534 23 6 3.7594 2.3343 3.6575 24 6 4.8522 1.5722 4.0262 25 6 5.4857 0.7746 3.0916 26 6 5.0258 0.7385 1.7884 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 6.3326 3.9969 -2.4142 33 1 4.6826 4.6327 -2.2105 34 1 6.7832 7.6520 -2.3924 35 1 5.6023 0.9678 -0.4538 36 1 7.0240 2.1921 -2.8614 37 1 7.2697 0.5425 -2.2391 38 1 5.6974 1.0075 -2.9312 39 1 6.9348 2.6137 0.8362 40 1 7.9924 1.4806 -0.0385 41 1 7.7466 3.1302 -0.6613 42 1 2.4500 2.8988 2.0646 43 1 3.2647 2.9578 4.3876 44 1 5.2112 1.6002 5.0443 45 1 6.3397 0.1796 3.3796 46 1 5.5206 0.1154 1.0583 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574903922.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:59:14 Heat of formation + Delta-G solvation = -53.500150 kcal Electronic energy + Delta-G solvation = -26715.767992 eV Core-core repulsion = 23184.754472 eV Total energy + Delta-G solvation = -3531.013520 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.19550 -38.38497 -37.45729 -35.85279 -32.94307 -32.31006 -30.92620 -30.78312 -30.48233 -28.01017 -26.69242 -25.93566 -23.08394 -22.85907 -22.33745 -21.62253 -20.97647 -18.28972 -17.39210 -16.67340 -16.48782 -16.29833 -15.73462 -15.02470 -14.84240 -14.47750 -14.45178 -14.13568 -13.58788 -13.41144 -13.29423 -13.16793 -12.63363 -12.52243 -12.41719 -12.29469 -12.14226 -11.85666 -11.60858 -11.57578 -11.29579 -11.16216 -11.03970 -10.89265 -10.86972 -10.78770 -10.52640 -10.30073 -9.98536 -9.70269 -9.48222 -9.06533 -8.74878 -8.39498 -8.39056 -7.61967 -6.00118 -4.02940 1.40828 1.56290 3.31539 3.32443 3.38461 3.40135 3.45615 3.89666 4.28688 4.49471 4.74836 4.87423 5.04368 5.06239 5.08616 5.17800 5.21227 5.29054 5.33647 5.34671 5.38569 5.55300 5.58002 5.65448 5.67776 5.77425 5.89156 5.98572 6.05029 6.09085 6.14561 6.17870 6.25897 6.39585 6.54206 6.61805 6.64672 6.69047 6.99731 7.06041 7.11424 7.28711 7.50807 7.60944 7.97497 8.28959 8.44461 8.95267 9.12051 9.61111 11.08128 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.012386 B = 0.005620 C = 0.005081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2260.016813 B = 4980.871899 C = 5509.810497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.053 3.947 3 O -0.350 6.350 4 C 0.113 3.887 5 H 0.082 0.918 6 C 0.515 3.485 7 O -0.519 6.519 8 N -0.586 5.586 9 C 0.247 3.753 10 C -0.516 4.516 11 H 0.059 0.941 12 C 0.061 3.939 13 N -0.896 5.896 14 Si 0.893 3.107 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.127 3.873 19 C -0.164 4.164 20 C -0.154 4.154 21 C -0.104 4.104 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.117 4.117 25 C -0.123 4.123 26 C -0.107 4.107 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.047 0.953 31 H 0.048 0.952 32 H 0.035 0.965 33 H 0.043 0.957 34 H 0.261 0.739 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.051 0.949 39 H 0.058 0.942 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.128 0.872 43 H 0.121 0.879 44 H 0.119 0.881 45 H 0.121 0.879 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.817 -17.473 7.363 19.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.023 4.023 3 O -0.268 6.268 4 C 0.052 3.948 5 H 0.100 0.900 6 C 0.299 3.701 7 O -0.395 6.395 8 N -0.320 5.320 9 C 0.128 3.872 10 C -0.555 4.555 11 H 0.077 0.923 12 C -0.141 4.141 13 N -0.535 5.535 14 Si 0.721 3.279 15 H -0.198 1.198 16 H -0.211 1.211 17 H -0.210 1.210 18 C 0.022 3.978 19 C -0.222 4.222 20 C -0.212 4.212 21 C -0.105 4.105 22 C -0.097 4.097 23 C -0.141 4.141 24 C -0.135 4.135 25 C -0.141 4.141 26 C -0.125 4.125 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.137 0.863 45 H 0.139 0.861 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -3.341 -16.669 7.113 18.429 hybrid contribution 0.699 0.512 0.753 1.148 sum -2.642 -16.157 7.866 18.163 Atomic orbital electron populations 1.21706 0.93596 1.01873 1.03410 1.22565 0.95802 0.84116 0.99854 1.88076 1.18292 1.25704 1.94705 1.20864 0.82998 0.98424 0.92553 0.90018 1.19762 0.83106 0.87366 0.79829 1.90680 1.50182 1.43465 1.55148 1.48226 1.07388 1.15800 1.60540 1.19264 0.96087 0.77984 0.93845 1.21469 1.41588 0.98438 0.93971 0.92294 1.24905 0.96019 0.97736 0.95440 1.69942 1.47453 1.19122 1.16990 0.86519 0.78196 0.80935 0.82270 1.19801 1.21059 1.20972 1.21185 0.91141 0.89477 0.95967 1.22198 1.01047 1.01650 0.97313 1.22103 0.96736 1.01485 1.00854 1.19991 0.97087 0.98526 0.94863 1.21043 0.99445 0.96632 0.92593 1.21145 0.97220 0.99434 0.96276 1.21137 0.96056 0.96887 0.99388 1.21013 0.99993 0.99898 0.93230 1.21023 0.95906 0.99126 0.96400 0.91800 0.91657 0.91308 0.93469 0.93414 0.94700 0.93906 0.92892 0.90852 0.91229 0.92202 0.92988 0.92325 0.93416 0.90120 0.85390 0.86113 0.86326 0.86099 0.85977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.28 37.16 0.38 -1.18 16 2 C 0.05 0.66 6.46 37.16 0.24 0.90 16 3 O -0.35 -5.97 9.09 -54.64 -0.50 -6.47 16 4 C 0.11 1.92 2.01 -29.03 -0.06 1.86 16 5 H 0.08 1.16 6.21 -51.93 -0.32 0.83 16 6 C 0.51 11.35 6.87 -10.99 -0.08 11.28 16 7 O -0.52 -13.90 16.13 -13.85 -0.22 -14.12 16 8 N -0.59 -12.56 2.39 -167.47 -0.40 -12.96 16 9 C 0.25 6.43 4.53 -5.19 -0.02 6.41 16 10 C -0.52 -14.42 7.84 -34.44 -0.27 -14.69 16 11 H 0.06 1.67 7.56 -52.49 -0.40 1.28 16 12 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 13 N -0.90 -26.62 13.29 55.43 0.74 -25.88 16 14 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 16 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 17 H -0.28 -7.05 7.11 56.52 0.40 -6.65 16 18 C 0.13 2.09 2.63 -67.93 -0.18 1.91 16 19 C -0.16 -2.38 9.24 37.16 0.34 -2.04 16 20 C -0.15 -2.58 8.16 37.15 0.30 -2.27 16 21 C -0.10 -1.65 4.70 -104.62 -0.49 -2.14 16 22 C -0.08 -1.30 9.31 -39.58 -0.37 -1.67 16 23 C -0.12 -1.73 10.05 -39.58 -0.40 -2.13 16 24 C -0.12 -1.46 10.05 -39.58 -0.40 -1.86 16 25 C -0.12 -1.50 10.05 -39.58 -0.40 -1.90 16 26 C -0.11 -1.42 8.13 -39.58 -0.32 -1.74 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.05 0.52 8.08 -51.93 -0.42 0.10 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.91 6.63 -51.93 -0.34 0.57 16 33 H 0.04 1.28 7.36 -51.93 -0.38 0.90 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.07 1.03 2.81 -51.93 -0.15 0.88 16 36 H 0.07 1.15 6.81 -51.93 -0.35 0.79 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.06 1.07 7.77 -51.93 -0.40 0.66 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.08 1.58 6.94 -51.93 -0.36 1.22 16 42 H 0.13 2.28 7.93 -52.49 -0.42 1.87 16 43 H 0.12 1.45 8.06 -52.48 -0.42 1.03 16 44 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 45 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 46 H 0.12 1.36 6.36 -52.49 -0.33 1.02 16 LS Contribution 371.42 15.07 5.60 5.60 Total: -1.00 -33.72 371.42 -8.86 -42.58 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -7.24 Total: 1.84 kcal Atomic # 6 Polarization: -5.83 SS G_CDS: -1.81 Total: -7.64 kcal Atomic # 7 Polarization: -39.17 SS G_CDS: 0.34 Total: -38.84 kcal Atomic # 8 Polarization: -19.87 SS G_CDS: -0.72 Total: -20.59 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.72 -8.86 -42.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574903922.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.919 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds