Wall clock time and date at job start Tue Mar 31 2020 09:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 O 1.42895 * 109.46934 * 2 1 4 4 C 1.35998 * 116.99860 * 180.02562 * 3 2 1 5 5 C 1.38566 * 120.07272 * 359.97438 * 4 3 2 6 6 C 1.38234 * 119.99993 * 180.02562 * 5 4 3 7 7 C 1.50705 * 119.92884 * 180.02562 * 6 5 4 8 8 N 1.46897 * 109.46801 * 270.00194 * 7 6 5 9 9 C 1.46846 * 111.00301 * 294.20500 * 8 7 6 10 10 C 1.53039 * 109.52491 * 174.16187 * 9 8 7 11 11 C 1.53123 * 109.27798 * 59.18412 * 10 9 8 12 12 C 1.50701 * 109.57405 * 182.40933 * 11 10 9 13 13 H 1.08000 * 119.99839 * 119.70998 * 12 11 10 14 14 C 1.37879 * 119.99636 * 299.71151 * 12 11 10 15 15 N 1.31514 * 119.99552 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00116 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.46925 * 90.00334 * 16 14 12 18 18 H 1.48500 * 109.46956 * 209.99855 * 16 14 12 19 19 H 1.48494 * 109.47607 * 330.00134 * 16 14 12 20 20 C 1.53128 * 109.15481 * 302.34280 * 11 10 9 21 21 C 1.46850 * 110.99892 * 169.99518 * 8 7 6 22 22 C 1.38256 * 120.14940 * 0.02562 * 6 5 4 23 23 C 1.38245 * 120.14249 * 359.97438 * 22 6 5 24 24 C 1.38561 * 120.00240 * 0.02562 * 23 22 6 25 25 O 1.35987 * 120.07453 * 180.02562 * 24 23 22 26 26 H 1.08996 * 109.47132 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47140 * 300.00022 * 1 2 3 28 28 H 1.09004 * 109.47336 * 59.99788 * 1 2 3 29 29 H 1.08999 * 109.46468 * 240.00074 * 2 1 3 30 30 H 1.08990 * 109.46805 * 120.00387 * 2 1 3 31 31 H 1.08006 * 119.99637 * 0.02562 * 5 4 3 32 32 H 1.09000 * 109.46603 * 29.99937 * 7 6 5 33 33 H 1.08998 * 109.47483 * 149.99897 * 7 6 5 34 34 H 1.09000 * 109.46441 * 294.17920 * 9 8 7 35 35 H 1.09003 * 109.45815 * 54.14542 * 9 8 7 36 36 H 1.08998 * 109.50669 * 299.24205 * 10 9 8 37 37 H 1.09001 * 109.53456 * 179.13693 * 10 9 8 38 38 H 1.08996 * 109.52374 * 62.24314 * 11 10 9 39 39 H 0.97001 * 119.99924 * 179.97438 * 15 14 12 40 40 H 1.08996 * 109.50594 * 297.71044 * 20 11 10 41 41 H 1.09006 * 109.52784 * 177.61549 * 20 11 10 42 42 H 1.09001 * 109.46579 * 305.85792 * 21 8 7 43 43 H 1.09004 * 109.45785 * 65.83291 * 21 8 7 44 44 H 1.07998 * 119.92916 * 180.27532 * 22 6 5 45 45 H 1.08000 * 119.99343 * 180.02562 * 23 22 6 46 46 H 0.96699 * 114.00742 * 89.99657 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3546 1.5254 -0.0005 5 6 4.2001 0.4276 -0.0005 6 6 5.5703 0.6105 -0.0005 7 6 6.4883 -0.5846 -0.0011 8 7 6.7867 -0.9735 1.3837 9 6 7.5623 0.0691 2.0677 10 6 7.7290 -0.3024 3.5429 11 6 8.4480 -1.6504 3.6467 12 6 8.5632 -2.0510 5.0949 13 1 8.1091 -2.9684 5.4391 14 6 9.2484 -1.2462 5.9803 15 7 9.3494 -1.5961 7.2440 16 14 10.0344 0.3401 5.3846 17 1 9.0601 1.4536 5.5121 18 1 11.2352 0.6366 6.2065 19 1 10.4328 0.1915 3.9619 20 6 7.6444 -2.7084 2.8854 21 6 7.4801 -2.2672 1.4293 22 6 6.1004 1.8874 0.0000 23 6 5.2625 2.9869 -0.0001 24 6 3.8881 2.8107 0.0000 25 8 3.0625 3.8912 -0.0006 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8899 31 1 3.7885 -0.5709 -0.0005 32 1 6.0038 -1.4147 -0.5153 33 1 7.4154 -0.3305 -0.5149 34 1 8.5439 0.1560 1.6019 35 1 7.0380 1.0216 1.9900 36 1 6.7483 -0.3760 4.0128 37 1 8.3178 0.4637 4.0474 38 1 9.4438 -1.5665 3.2115 39 1 9.8317 -1.0301 7.8669 40 1 6.6623 -2.8198 3.3449 41 1 8.1724 -3.6614 2.9196 42 1 6.8962 -3.0115 0.8879 43 1 8.4621 -2.1692 0.9665 44 1 7.1714 2.0261 -0.0046 45 1 5.6792 3.9833 -0.0001 46 1 2.8237 4.2035 -0.8841 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580819544.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:42 Heat of formation + Delta-G solvation = -79.133063 kcal Electronic energy + Delta-G solvation = -25425.521429 eV Core-core repulsion = 21893.396382 eV Total energy + Delta-G solvation = -3532.125047 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.48258 -40.05553 -38.86859 -37.75319 -35.65588 -33.79997 -32.72717 -31.77042 -31.54494 -30.34480 -28.15865 -25.85655 -24.93578 -24.04204 -23.13647 -22.68662 -22.03075 -20.45846 -19.57999 -18.83715 -18.40174 -17.35158 -17.25718 -17.10772 -16.35921 -16.13786 -15.90625 -15.55019 -15.19338 -14.91080 -14.86984 -14.80799 -14.49703 -14.02847 -13.87511 -13.56684 -13.42093 -13.36049 -13.24753 -12.96094 -12.63481 -12.57178 -12.43280 -12.17750 -12.13930 -11.93029 -11.68610 -11.62022 -11.47113 -11.37853 -10.97113 -10.80813 -10.61127 -9.75719 -9.25649 -9.00451 -8.30064 -6.32779 0.18906 0.39212 1.29298 1.32836 1.43920 2.20858 2.31758 2.54312 3.05573 3.16526 3.27601 3.69838 3.89928 4.04795 4.09772 4.10486 4.14700 4.19606 4.26785 4.34952 4.37648 4.39293 4.56775 4.58357 4.62498 4.71920 4.73157 4.81795 4.88561 4.92978 4.93695 4.95118 4.97456 5.15007 5.18505 5.24764 5.27144 5.30429 5.53703 5.59374 5.67818 5.74095 5.78569 6.17231 6.25666 6.31776 6.33293 6.74630 6.89444 7.32432 8.87221 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016511 B = 0.003608 C = 0.003419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.478887 B = 7757.683512 C = 8186.745240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.325 6.325 4 C 0.089 3.911 5 C -0.176 4.176 6 C -0.048 4.048 7 C 0.094 3.906 8 N -0.541 5.541 9 C 0.061 3.939 10 C -0.113 4.113 11 C 0.013 3.987 12 C -0.516 4.516 13 H 0.031 0.969 14 C 0.008 3.992 15 N -0.953 5.953 16 Si 0.950 3.050 17 H -0.270 1.270 18 H -0.299 1.299 19 H -0.245 1.245 20 C -0.093 4.093 21 C 0.066 3.934 22 C -0.140 4.140 23 C -0.109 4.109 24 C 0.055 3.945 25 O -0.501 6.501 26 H 0.099 0.901 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.076 0.924 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.034 0.966 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.035 0.965 38 H 0.020 0.980 39 H 0.264 0.736 40 H 0.047 0.953 41 H 0.058 0.942 42 H 0.095 0.905 43 H 0.037 0.963 44 H 0.138 0.862 45 H 0.151 0.849 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.667 6.772 -23.835 27.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.031 4.031 3 O -0.240 6.240 4 C 0.043 3.957 5 C -0.195 4.195 6 C -0.049 4.049 7 C -0.032 4.032 8 N -0.266 5.266 9 C -0.066 4.066 10 C -0.151 4.151 11 C -0.006 4.006 12 C -0.554 4.554 13 H 0.049 0.951 14 C -0.188 4.188 15 N -0.594 5.594 16 Si 0.777 3.223 17 H -0.196 1.196 18 H -0.227 1.227 19 H -0.168 1.168 20 C -0.131 4.131 21 C -0.061 4.061 22 C -0.159 4.159 23 C -0.128 4.128 24 C 0.010 3.990 25 O -0.312 6.312 26 H 0.117 0.883 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.078 0.922 31 H 0.160 0.840 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.053 0.947 35 H 0.097 0.903 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.038 0.962 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.113 0.887 43 H 0.055 0.945 44 H 0.156 0.844 45 H 0.169 0.831 46 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -13.172 6.820 -22.833 27.228 hybrid contribution 1.185 0.507 -0.009 1.289 sum -11.987 7.327 -22.842 26.816 Atomic orbital electron populations 1.21788 0.91366 1.04118 1.03143 1.23052 0.97004 0.80954 1.02062 1.86105 1.18264 1.30925 1.88667 1.19585 0.83268 0.93997 0.98871 1.21148 0.93416 0.98243 1.06736 1.19710 0.93339 0.94858 0.97007 1.21099 0.97473 0.95710 0.88959 1.61862 1.46819 1.02840 1.15041 1.22106 0.95573 0.95229 0.93725 1.21856 0.99928 0.97947 0.95388 1.19154 0.94681 0.93087 0.93717 1.21443 1.32987 1.07013 0.94007 0.95068 1.25916 0.96563 1.01636 0.94701 1.70060 1.44418 1.40295 1.04601 0.85815 0.77333 0.79852 0.79274 1.19589 1.22658 1.16832 1.21401 0.99348 0.97859 0.94500 1.22100 0.96912 0.90662 0.96430 1.21096 1.00573 0.91450 1.02759 1.21394 0.91114 1.00664 0.99583 1.17967 0.89370 0.84115 1.07554 1.84847 1.66752 1.44747 1.34872 0.88264 0.92387 0.91305 0.90602 0.92247 0.83959 0.88082 0.92628 0.94750 0.90321 0.93366 0.94634 0.96192 0.92679 0.93414 0.92350 0.88706 0.94511 0.84421 0.83129 0.74105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 10.28 71.98 0.74 -1.18 16 2 C 0.04 0.75 5.46 71.98 0.39 1.15 16 3 O -0.33 -7.78 9.92 -79.67 -0.79 -8.57 16 4 C 0.09 2.19 6.70 22.57 0.15 2.34 16 5 C -0.18 -4.04 8.69 22.35 0.19 -3.85 16 6 C -0.05 -1.10 4.89 -19.86 -0.10 -1.20 16 7 C 0.09 2.04 5.12 85.56 0.44 2.48 16 8 N -0.54 -15.78 4.65 -900.92 -4.19 -19.97 16 9 C 0.06 2.04 5.16 86.33 0.45 2.48 16 10 C -0.11 -4.88 4.84 30.65 0.15 -4.73 16 11 C 0.01 0.58 1.75 -11.46 -0.02 0.56 16 12 C -0.52 -30.14 9.15 25.60 0.23 -29.91 16 13 H 0.03 2.01 7.99 -2.91 -0.02 1.99 16 14 C 0.01 0.49 5.45 84.66 0.46 0.95 16 15 N -0.95 -61.17 13.96 21.45 0.30 -60.87 16 16 Si 0.95 46.13 24.37 68.60 1.67 47.80 16 17 H -0.27 -12.63 6.89 99.48 0.69 -11.94 16 18 H -0.30 -14.42 7.11 99.48 0.71 -13.71 16 19 H -0.24 -10.86 6.53 99.48 0.65 -10.21 16 20 C -0.09 -3.61 5.32 30.65 0.16 -3.44 16 21 C 0.07 1.92 5.46 86.32 0.47 2.39 16 22 C -0.14 -3.04 7.86 22.28 0.18 -2.86 16 23 C -0.11 -2.34 9.98 22.35 0.22 -2.12 16 24 C 0.06 1.33 6.72 22.57 0.15 1.48 16 25 O -0.50 -11.13 13.29 -79.54 -1.06 -12.19 16 26 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 29 H 0.08 1.05 7.66 -2.39 -0.02 1.03 16 30 H 0.06 1.08 7.66 -2.39 -0.02 1.06 16 31 H 0.14 2.84 6.30 -2.91 -0.02 2.82 16 32 H 0.10 1.79 7.93 -2.39 -0.02 1.77 16 33 H 0.06 1.08 8.07 -2.39 -0.02 1.06 16 34 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.08 2.46 5.75 -2.39 -0.01 2.45 16 36 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.04 1.60 3.38 -2.39 -0.01 1.59 16 38 H 0.02 0.94 7.19 -2.39 -0.02 0.92 16 39 H 0.26 15.90 8.31 -92.71 -0.77 15.13 16 40 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 41 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 42 H 0.09 2.21 8.02 -2.39 -0.02 2.19 16 43 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.14 2.60 7.96 -2.91 -0.02 2.58 16 45 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 46 H 0.40 4.87 9.06 -74.06 -0.67 4.20 16 Total: -1.00 -73.27 358.00 0.43 -72.84 By element: Atomic # 1 Polarization: 16.17 SS G_CDS: 0.22 Total: 16.39 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.27 Total: -35.44 kcal Atomic # 7 Polarization: -76.96 SS G_CDS: -3.89 Total: -80.84 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -1.85 Total: -20.76 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 1.67 Total: 47.80 kcal Total: -73.27 0.43 -72.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580819544.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.291 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds