Wall clock time and date at job start Tue Mar 31 2020 10:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46510 * 109.46850 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99745 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00337 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99801 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.46906 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46974 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46974 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46906 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00123 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99872 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99699 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47323 * 60.00849 * 21 19 17 23 23 H 1.48503 * 109.46804 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47488 * 300.00272 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 35 35 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 36 36 H 0.96990 * 119.99907 * 0.02562 * 10 9 8 37 37 H 1.09002 * 109.47303 * 300.00178 * 13 11 10 38 38 H 1.09000 * 109.47206 * 60.00303 * 13 11 10 39 39 H 1.09003 * 109.47200 * 299.99520 * 14 13 11 40 40 H 1.08993 * 109.47459 * 60.00249 * 14 13 11 41 41 H 1.08995 * 109.46550 * 299.99966 * 15 14 13 42 42 H 1.08993 * 109.46916 * 59.99804 * 15 14 13 43 43 H 1.09002 * 109.47061 * 299.99940 * 16 15 14 44 44 H 1.09000 * 109.47164 * 59.99890 * 16 15 14 45 45 H 0.97007 * 119.99959 * 179.97438 * 20 19 17 46 46 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5318 2.7052 -1.4449 11 6 8.2039 2.7410 -2.6126 12 8 7.5976 2.7080 -3.6625 13 6 9.7087 2.8222 -2.6137 14 6 10.2169 2.8498 -4.0565 15 6 11.7448 2.9315 -4.0576 16 6 12.2529 2.9585 -5.5005 17 6 13.7578 3.0396 -5.5016 18 1 14.2977 3.0686 -4.5667 19 6 14.4453 3.0758 -6.6962 20 7 13.7879 3.0399 -7.8346 21 14 16.3106 3.1771 -6.6975 22 1 16.8711 1.9939 -5.9967 23 1 16.8038 3.2031 -8.0979 24 1 16.7396 4.4153 -5.9990 25 6 3.4311 1.2849 -0.0001 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 5.7537 1.7175 -1.9574 35 1 5.6579 3.4948 -1.9574 36 1 8.0167 2.7312 -0.6053 37 1 10.0240 3.7306 -2.1004 38 1 10.1198 1.9533 -2.0998 39 1 9.9017 1.9415 -4.5702 40 1 9.8058 3.7189 -4.5700 41 1 12.0603 3.8395 -3.5439 42 1 12.1554 2.0622 -3.5443 43 1 11.9373 2.0502 -6.0139 44 1 11.8422 3.8276 -6.0142 45 1 14.2716 3.0657 -8.6751 46 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588151639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:37 Heat of formation + Delta-G solvation = -84.079607 kcal Electronic energy + Delta-G solvation = -22923.522028 eV Core-core repulsion = 19391.182483 eV Total energy + Delta-G solvation = -3532.339545 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.59171 -39.63136 -38.17331 -35.60388 -34.76491 -32.87576 -32.51010 -30.96709 -29.90519 -28.54764 -27.64996 -25.66176 -23.83171 -22.93199 -22.08772 -21.34660 -20.19815 -19.91465 -18.16130 -16.75977 -16.69870 -16.43354 -16.27609 -16.15029 -15.92904 -15.81334 -14.96721 -14.44869 -14.39501 -14.08993 -13.75935 -13.59492 -13.44210 -13.16381 -12.59265 -12.43334 -12.30804 -12.20903 -11.99062 -11.64683 -11.60053 -11.55062 -11.41883 -11.21806 -10.93770 -10.51073 -10.48400 -10.36793 -9.78611 -9.57171 -9.26560 -9.17099 -9.13822 -8.95267 -8.60539 -8.27197 -5.92081 -3.94636 0.86843 1.04834 2.78122 2.81223 3.12088 3.37471 3.37496 3.41765 3.44077 4.34816 4.36398 4.51554 4.56356 4.64593 4.67941 4.68627 4.72618 4.91979 4.99863 5.01086 5.05838 5.18289 5.24473 5.37502 5.41243 5.43414 5.54729 5.65658 5.73428 5.87549 5.92525 6.02061 6.18416 6.19154 6.30514 6.34955 6.36786 6.59352 6.88529 6.96654 7.06645 7.24042 7.47086 7.77280 7.93957 8.09491 8.31432 8.51198 9.12888 9.68756 11.19159 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.039531 B = 0.001591 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.138870 B =17593.015954 C =17800.269664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.318 6.318 3 C 0.128 3.872 4 C -0.211 4.211 5 C -0.078 4.078 6 C -0.150 4.150 7 C -0.041 4.041 8 C -0.092 4.092 9 C 0.124 3.876 10 N -0.740 5.740 11 C 0.511 3.489 12 O -0.535 6.535 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.019 3.981 17 C -0.521 4.521 18 H 0.054 0.946 19 C 0.055 3.945 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.288 1.288 24 H -0.277 1.277 25 C -0.146 4.146 26 H 0.100 0.900 27 H 0.055 0.945 28 H 0.056 0.944 29 H 0.127 0.873 30 H 0.126 0.874 31 H 0.125 0.875 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.400 0.600 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.046 0.954 42 H 0.046 0.954 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.733 -1.781 22.540 35.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.231 6.231 3 C 0.083 3.917 4 C -0.230 4.230 5 C -0.096 4.096 6 C -0.169 4.169 7 C -0.042 4.042 8 C -0.129 4.129 9 C 0.000 4.000 10 N -0.394 5.394 11 C 0.298 3.702 12 O -0.410 6.410 13 C -0.178 4.178 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.018 4.018 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.164 4.164 26 H 0.119 0.881 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.102 0.898 33 H 0.101 0.899 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.234 0.766 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -28.077 -2.003 21.556 35.454 hybrid contribution 0.856 0.210 0.361 0.952 sum -27.221 -1.793 21.917 34.993 Atomic orbital electron populations 1.23066 0.78277 1.04063 1.01363 1.86085 1.21477 1.26916 1.88658 1.19005 0.92298 0.84213 0.96218 1.21253 1.00065 0.92468 1.09211 1.20939 0.94584 0.97030 0.97062 1.21004 0.93791 0.98104 1.03965 1.19439 0.94912 0.92332 0.97480 1.20806 0.91187 1.03970 0.96985 1.21251 0.80296 1.02798 0.95612 1.46100 1.07014 1.77185 1.09118 1.21112 0.90888 0.75057 0.83102 1.90714 1.70528 1.48419 1.31378 1.21792 0.90160 1.03923 1.01950 1.21454 0.97258 1.02943 0.92528 1.21650 0.91917 1.00024 1.01205 1.19098 0.95365 0.97318 0.89984 1.21257 0.92197 1.50345 0.92156 0.92808 1.25040 0.98305 0.95477 0.95722 1.69969 1.35439 1.50811 0.97225 0.86669 0.85943 0.78545 0.76876 1.20303 1.21332 1.20307 1.20325 0.91395 0.98288 1.06423 0.88149 0.92651 0.92563 0.85532 0.85646 0.85657 0.89849 0.89935 0.91352 0.91359 0.76641 0.89150 0.89140 0.91819 0.91820 0.93487 0.93485 0.96581 0.96587 0.93016 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 9.81 101.05 0.99 1.12 16 2 O -0.32 -2.76 10.50 -19.44 -0.20 -2.96 16 3 C 0.13 1.14 6.69 -39.22 -0.26 0.87 16 4 C -0.21 -1.58 9.04 -39.43 -0.36 -1.94 16 5 C -0.08 -0.55 10.04 -39.60 -0.40 -0.95 16 6 C -0.15 -1.12 9.70 -39.56 -0.38 -1.50 16 7 C -0.04 -0.32 5.13 -104.65 -0.54 -0.86 16 8 C -0.09 -0.60 5.46 -27.88 -0.15 -0.75 16 9 C 0.12 1.17 5.66 -4.04 -0.02 1.15 16 10 N -0.74 -7.30 5.56 -60.29 -0.33 -7.64 16 11 C 0.51 7.23 7.83 -10.98 -0.09 7.14 16 12 O -0.53 -10.06 15.98 5.55 0.09 -9.97 16 13 C -0.14 -1.85 5.70 -27.88 -0.16 -2.01 16 14 C -0.10 -1.90 4.50 -26.73 -0.12 -2.02 16 15 C -0.11 -2.31 5.15 -26.73 -0.14 -2.45 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.19 9.11 -34.44 -0.31 -15.51 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.10 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -27.75 13.29 55.43 0.74 -27.01 16 21 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C -0.15 -1.28 9.64 -39.44 -0.38 -1.66 16 26 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.20 7.67 -51.93 -0.40 -0.20 16 28 H 0.06 0.22 7.65 -51.93 -0.40 -0.17 16 29 H 0.13 0.68 6.30 -52.49 -0.33 0.35 16 30 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 31 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 32 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.08 0.45 8.08 -51.93 -0.42 0.03 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.40 2.62 8.47 -40.82 -0.35 2.27 16 37 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.06 1.25 8.10 -51.93 -0.42 0.82 16 40 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 41 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 46 H 0.13 1.06 8.06 -52.48 -0.42 0.64 16 LS Contribution 386.03 15.07 5.82 5.82 Total: -1.00 -35.87 386.03 -9.24 -45.11 By element: Atomic # 1 Polarization: 4.80 SS G_CDS: -7.77 Total: -2.97 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: -2.55 Total: -17.42 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.40 Total: -34.65 kcal Atomic # 8 Polarization: -12.82 SS G_CDS: -0.12 Total: -12.94 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.87 -9.24 -45.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.972 kcal (2) G-P(sol) polarization free energy of solvation -35.869 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.080 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds