Wall clock time and date at job start Tue Mar 31 2020 10:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35905 * 116.99604 * 2 1 4 4 C 1.38745 * 120.05685 * 359.72933 * 3 2 1 5 5 C 1.38130 * 119.94480 * 179.69913 * 4 3 2 6 6 C 1.38291 * 120.05012 * 0.59399 * 5 4 3 7 7 C 1.38246 * 120.11190 * 359.67962 * 6 5 4 8 8 C 1.50703 * 119.97077 * 179.97438 * 7 6 5 9 9 C 1.52997 * 109.46906 * 270.02263 * 8 7 6 10 10 N 1.46510 * 109.46850 * 179.97438 * 9 8 7 11 11 C 1.34775 * 119.99745 * 179.97438 * 10 9 8 12 12 O 1.21284 * 120.00337 * 0.02562 * 11 10 9 13 13 C 1.50703 * 119.99801 * 180.02562 * 11 10 9 14 14 C 1.52997 * 109.46906 * 180.02562 * 13 11 10 15 15 C 1.53008 * 109.46974 * 180.02562 * 14 13 11 16 16 C 1.52997 * 109.46974 * 179.97438 * 15 14 13 17 17 C 1.50703 * 109.46906 * 179.97438 * 16 15 14 18 18 H 1.08000 * 120.00123 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99872 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99831 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 119.99699 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.47323 * 60.00849 * 21 19 17 23 23 H 1.48503 * 109.46804 * 180.02562 * 21 19 17 24 24 H 1.48491 * 109.47488 * 300.00272 * 21 19 17 25 25 C 1.38159 * 120.05555 * 0.02562 * 7 6 5 26 26 H 1.08995 * 109.47253 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47352 * 299.99771 * 1 2 3 28 28 H 1.08999 * 109.47144 * 59.99795 * 1 2 3 29 29 H 1.07997 * 120.03176 * 359.97124 * 4 3 2 30 30 H 1.07997 * 119.97739 * 180.29791 * 5 4 3 31 31 H 1.08001 * 119.94552 * 179.70178 * 6 5 4 32 32 H 1.09002 * 109.47303 * 30.02167 * 8 7 6 33 33 H 1.09000 * 109.47206 * 150.02292 * 8 7 6 34 34 H 1.08995 * 109.47455 * 299.99525 * 9 8 7 35 35 H 1.08993 * 109.47459 * 60.00249 * 9 8 7 36 36 H 0.96990 * 119.99907 * 0.02562 * 10 9 8 37 37 H 1.09002 * 109.47303 * 300.00178 * 13 11 10 38 38 H 1.09000 * 109.47206 * 60.00303 * 13 11 10 39 39 H 1.09003 * 109.47200 * 299.99520 * 14 13 11 40 40 H 1.08993 * 109.47459 * 60.00249 * 14 13 11 41 41 H 1.08995 * 109.46550 * 299.99966 * 15 14 13 42 42 H 1.08993 * 109.46916 * 59.99804 * 15 14 13 43 43 H 1.09002 * 109.47061 * 299.99940 * 16 15 14 44 44 H 1.09000 * 109.47164 * 59.99890 * 16 15 14 45 45 H 0.97007 * 119.99959 * 179.97438 * 20 19 17 46 46 H 1.08006 * 120.02917 * 180.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2110 0.0000 4 6 1.2914 2.3753 -0.0057 5 6 1.9207 3.6048 0.0006 6 6 3.3018 3.6759 0.0002 7 6 4.0559 2.5172 0.0001 8 6 5.5607 2.5983 -0.0010 9 6 6.0689 2.6257 -1.4438 10 7 7.5318 2.7052 -1.4449 11 6 8.2039 2.7410 -2.6126 12 8 7.5976 2.7080 -3.6625 13 6 9.7087 2.8222 -2.6137 14 6 10.2169 2.8498 -4.0565 15 6 11.7448 2.9315 -4.0576 16 6 12.2529 2.9585 -5.5005 17 6 13.7578 3.0396 -5.5016 18 1 14.2977 3.0686 -4.5667 19 6 14.4453 3.0758 -6.6962 20 7 13.7879 3.0399 -7.8346 21 14 16.3106 3.1771 -6.6975 22 1 16.8711 1.9939 -5.9967 23 1 16.8038 3.2031 -8.0979 24 1 16.7396 4.4153 -5.9990 25 6 3.4311 1.2849 -0.0001 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 0.2128 2.3203 -0.0106 30 1 1.3339 4.5114 0.0011 31 1 3.7922 4.6381 0.0002 32 1 5.8760 3.5065 0.5126 33 1 5.9718 1.7291 0.5125 34 1 5.7537 1.7175 -1.9574 35 1 5.6579 3.4948 -1.9574 36 1 8.0167 2.7312 -0.6053 37 1 10.0240 3.7306 -2.1004 38 1 10.1198 1.9533 -2.0998 39 1 9.9017 1.9415 -4.5702 40 1 9.8058 3.7189 -4.5700 41 1 12.0603 3.8395 -3.5439 42 1 12.1554 2.0622 -3.5443 43 1 11.9373 2.0502 -6.0139 44 1 11.8422 3.8276 -6.0142 45 1 14.2716 3.0657 -8.6751 46 1 4.0206 0.3800 0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588151639.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:31:36 Heat of formation + Delta-G solvation = -106.836342 kcal Electronic energy + Delta-G solvation = -22924.508834 eV Core-core repulsion = 19391.182483 eV Total energy + Delta-G solvation = -3533.326351 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.16140 -40.70552 -38.75472 -36.77238 -36.22217 -34.59404 -33.53865 -31.66138 -31.35731 -29.42908 -28.12770 -27.31912 -24.91910 -23.66855 -23.42420 -21.98780 -21.74584 -21.14434 -18.74557 -18.40529 -17.75012 -17.33202 -17.03069 -16.99074 -16.85928 -16.64279 -16.46965 -15.94275 -15.22733 -14.93208 -14.76291 -14.51543 -14.39266 -14.16770 -13.79101 -13.65608 -13.56690 -13.25744 -12.91080 -12.84656 -12.77506 -12.54869 -12.35893 -12.25317 -12.13884 -12.09331 -11.92494 -11.74438 -11.35557 -11.34020 -11.16150 -10.76557 -10.53075 -10.09724 -9.81759 -9.17439 -8.17165 -6.29623 0.30037 0.47312 1.41339 1.45563 1.53384 1.68108 2.19687 2.38382 2.43549 2.77725 3.15355 3.76666 3.85876 3.93005 4.04066 4.05739 4.13116 4.17792 4.20421 4.28791 4.36396 4.40724 4.50337 4.59038 4.61170 4.69790 4.71583 4.72347 4.87576 4.89848 4.94686 5.03365 5.12815 5.21640 5.32437 5.35487 5.37813 5.46765 5.48699 5.59040 5.63330 5.79788 5.81628 5.89434 6.26589 6.43952 6.60228 6.88690 7.31930 7.39975 8.94798 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.039531 B = 0.001591 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.138870 B =17593.015954 C =17800.269664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.341 6.341 3 C 0.109 3.891 4 C -0.217 4.217 5 C -0.084 4.084 6 C -0.159 4.159 7 C -0.049 4.049 8 C -0.079 4.079 9 C 0.126 3.874 10 N -0.717 5.717 11 C 0.509 3.491 12 O -0.592 6.592 13 C -0.127 4.127 14 C -0.098 4.098 15 C -0.096 4.096 16 C 0.017 3.983 17 C -0.544 4.544 18 H 0.067 0.933 19 C -0.007 4.007 20 N -0.938 5.938 21 Si 0.970 3.030 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.264 1.264 25 C -0.166 4.166 26 H 0.116 0.884 27 H 0.067 0.933 28 H 0.062 0.938 29 H 0.145 0.855 30 H 0.148 0.852 31 H 0.141 0.859 32 H 0.105 0.895 33 H 0.096 0.904 34 H 0.048 0.952 35 H 0.055 0.945 36 H 0.420 0.580 37 H 0.121 0.879 38 H 0.120 0.880 39 H 0.040 0.960 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.061 0.939 43 H -0.016 1.016 44 H -0.016 1.016 45 H 0.262 0.738 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.046 -1.153 25.383 37.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.255 6.255 3 C 0.064 3.936 4 C -0.235 4.235 5 C -0.102 4.102 6 C -0.177 4.177 7 C -0.050 4.050 8 C -0.116 4.116 9 C 0.003 3.997 10 N -0.370 5.370 11 C 0.297 3.703 12 O -0.472 6.472 13 C -0.167 4.167 14 C -0.136 4.136 15 C -0.133 4.133 16 C -0.020 4.020 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.204 4.204 20 N -0.578 5.578 21 Si 0.794 3.206 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.184 4.184 26 H 0.134 0.866 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.163 0.837 30 H 0.166 0.834 31 H 0.159 0.841 32 H 0.123 0.877 33 H 0.114 0.886 34 H 0.067 0.933 35 H 0.073 0.927 36 H 0.258 0.742 37 H 0.139 0.861 38 H 0.138 0.862 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.080 0.920 43 H 0.002 0.998 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -27.396 -1.376 24.480 36.765 hybrid contribution 0.534 0.001 -0.541 0.760 sum -26.862 -1.375 23.939 36.007 Atomic orbital electron populations 1.23315 0.76524 1.05451 1.02214 1.86048 1.23452 1.27207 1.88792 1.19255 0.92675 0.84825 0.96860 1.21521 1.01083 0.92217 1.08697 1.21281 0.94840 0.97752 0.96280 1.21297 0.94217 0.98625 1.03578 1.19600 0.95647 0.92201 0.97519 1.20732 0.90293 1.05696 0.94887 1.21228 0.79783 1.01240 0.97497 1.45869 1.07302 1.75017 1.08853 1.21252 0.91279 0.74481 0.83297 1.90704 1.71536 1.51400 1.33610 1.21673 0.89584 1.06818 0.98585 1.21257 0.95476 1.00895 0.95950 1.21449 0.93461 1.01369 0.97025 1.19070 0.95086 0.94281 0.93545 1.21743 0.93281 1.50237 0.92900 0.91491 1.26101 1.04315 0.94774 0.95192 1.70134 1.37866 1.51756 0.98045 0.85424 0.78677 0.79343 0.77121 1.18913 1.21102 1.18879 1.20512 0.91813 0.98768 1.07335 0.86618 0.91478 0.91958 0.83746 0.83449 0.84121 0.87707 0.88575 0.93334 0.92678 0.74180 0.86076 0.86208 0.94078 0.93961 0.91932 0.92016 0.99794 0.99740 0.92893 0.85284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 9.81 113.37 1.11 1.28 16 2 O -0.34 -5.97 10.50 -92.48 -0.97 -6.94 16 3 C 0.11 1.94 6.69 22.50 0.15 2.09 16 4 C -0.22 -3.05 9.04 22.37 0.20 -2.85 16 5 C -0.08 -1.06 10.04 22.26 0.22 -0.84 16 6 C -0.16 -2.14 9.70 22.28 0.22 -1.93 16 7 C -0.05 -0.73 5.13 -19.88 -0.10 -0.83 16 8 C -0.08 -0.87 5.46 29.85 0.16 -0.70 16 9 C 0.13 2.28 5.66 86.38 0.49 2.77 16 10 N -0.72 -12.67 5.56 -463.05 -2.57 -15.24 16 11 C 0.51 13.87 7.83 87.66 0.69 14.55 16 12 O -0.59 -22.87 15.98 -3.04 -0.05 -22.92 16 13 C -0.13 -3.10 5.70 29.85 0.17 -2.93 16 14 C -0.10 -3.58 4.50 30.60 0.14 -3.45 16 15 C -0.10 -3.94 5.15 30.60 0.16 -3.78 16 16 C 0.02 0.96 4.97 29.85 0.15 1.11 16 17 C -0.54 -31.82 9.11 25.60 0.23 -31.59 16 18 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 19 C -0.01 -0.39 5.46 84.66 0.46 0.07 16 20 N -0.94 -59.53 13.29 21.45 0.28 -59.24 16 21 Si 0.97 45.04 29.54 68.60 2.03 47.06 16 22 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 23 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 24 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 25 C -0.17 -2.92 9.64 22.36 0.22 -2.70 16 26 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 27 H 0.07 0.41 7.67 -2.39 -0.02 0.39 16 28 H 0.06 0.45 7.65 -2.39 -0.02 0.43 16 29 H 0.14 1.36 6.30 -2.91 -0.02 1.34 16 30 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 31 H 0.14 1.38 8.06 -2.91 -0.02 1.36 16 32 H 0.10 0.74 8.09 -2.39 -0.02 0.72 16 33 H 0.10 0.83 8.08 -2.39 -0.02 0.81 16 34 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.05 1.16 8.14 -2.39 -0.02 1.15 16 36 H 0.42 4.00 8.47 -92.72 -0.79 3.21 16 37 H 0.12 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.12 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.04 1.66 8.10 -2.39 -0.02 1.64 16 40 H 0.04 1.70 8.10 -2.39 -0.02 1.68 16 41 H 0.06 2.38 8.14 -2.39 -0.02 2.37 16 42 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 43 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 44 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 45 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 46 H 0.13 2.17 8.06 -2.91 -0.02 2.14 16 Total: -1.00 -81.39 386.03 3.55 -77.84 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: 0.16 Total: 9.16 kcal Atomic # 6 Polarization: -34.39 SS G_CDS: 4.67 Total: -29.72 kcal Atomic # 7 Polarization: -72.20 SS G_CDS: -2.29 Total: -74.48 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -1.02 Total: -29.86 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.06 kcal Total: -81.39 3.55 -77.84 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588151639.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.000 kcal (2) G-P(sol) polarization free energy of solvation -81.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds