Wall clock time and date at job start Tue Mar 31 2020 09:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42901 * 109.47069 * 2 1 4 4 C 1.35970 * 116.99877 * 180.02562 * 3 2 1 5 5 C 1.38735 * 119.98528 * 359.97438 * 4 3 2 6 6 C 1.38070 * 120.01337 * 179.97438 * 5 4 3 7 7 C 1.38864 * 119.98625 * 0.02562 * 6 5 4 8 8 N 1.40106 * 120.01482 * 179.97438 * 7 6 5 9 9 C 1.34781 * 120.00097 * 325.28406 * 8 7 6 10 10 O 1.21287 * 119.99920 * 4.49745 * 9 8 7 11 11 C 1.50699 * 119.99989 * 184.49690 * 9 8 7 12 12 C 1.52997 * 109.47219 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.47369 * 180.02562 * 12 11 9 14 14 C 1.53005 * 109.47404 * 180.02562 * 13 12 11 15 15 C 1.50699 * 109.47253 * 179.97438 * 14 13 12 16 16 H 1.07999 * 120.00103 * 0.02562 * 15 14 13 17 17 C 1.37876 * 119.99835 * 179.97438 * 15 14 13 18 18 N 1.31514 * 119.99997 * 0.02562 * 17 15 14 19 19 Si 1.86795 * 119.99892 * 180.02562 * 17 15 14 20 20 H 1.48499 * 109.47319 * 60.00351 * 19 17 15 21 21 H 1.48502 * 109.47413 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.47326 * 300.00276 * 19 17 15 23 23 C 1.38825 * 119.96965 * 359.97438 * 7 6 5 24 24 C 1.50697 * 120.00710 * 180.02562 * 23 7 6 25 25 C 1.38104 * 119.98335 * 359.74525 * 23 7 6 26 26 H 1.08997 * 109.46558 * 60.00526 * 1 2 3 27 27 H 1.09002 * 109.46602 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47168 * 300.00217 * 1 2 3 29 29 H 1.09010 * 109.46744 * 119.99648 * 2 1 3 30 30 H 1.08999 * 109.47323 * 239.99407 * 2 1 3 31 31 H 1.07997 * 119.99880 * 0.02562 * 5 4 3 32 32 H 1.08008 * 120.00886 * 179.97438 * 6 5 4 33 33 H 0.96998 * 120.00105 * 145.28848 * 8 7 6 34 34 H 1.08998 * 109.47359 * 300.00139 * 11 9 8 35 35 H 1.09008 * 109.47272 * 60.00397 * 11 9 8 36 36 H 1.08998 * 109.46991 * 300.00269 * 12 11 9 37 37 H 1.09003 * 109.47186 * 59.99829 * 12 11 9 38 38 H 1.09006 * 109.46701 * 299.99975 * 13 12 11 39 39 H 1.08996 * 109.47689 * 59.99787 * 13 12 11 40 40 H 1.08998 * 109.46771 * 299.99842 * 14 13 12 41 41 H 1.09008 * 109.46938 * 59.99536 * 14 13 12 42 42 H 0.97006 * 119.99644 * 179.97438 * 18 17 15 43 43 H 1.08999 * 109.47238 * 90.00104 * 24 23 7 44 44 H 1.08998 * 109.47444 * 209.99988 * 24 23 7 45 45 H 1.09003 * 109.47166 * 330.00125 * 24 23 7 46 46 H 1.08002 * 119.99235 * 180.27190 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3543 1.5254 -0.0005 5 6 4.1992 0.4250 -0.0005 6 6 5.5680 0.6052 -0.0016 7 6 6.0992 1.8883 -0.0022 8 7 7.4881 2.0718 -0.0027 9 6 8.2822 1.2091 0.6620 10 8 7.8031 0.2291 1.1920 11 6 9.7654 1.4623 0.7466 12 6 10.4291 0.3417 1.5494 13 6 11.9347 0.5990 1.6359 14 6 12.5986 -0.5220 2.4381 15 6 14.0817 -0.2689 2.5227 16 1 14.5082 0.6045 2.0518 17 6 14.8941 -1.1517 3.2023 18 7 14.3746 -2.2149 3.7762 19 14 16.7324 -0.8375 3.3078 20 1 16.9744 0.4637 3.9812 21 1 17.3767 -1.9256 4.0863 22 1 17.3078 -0.8011 1.9392 23 6 5.2532 2.9890 -0.0022 24 6 5.8286 4.3817 -0.0034 25 6 3.8842 2.8073 -0.0070 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.8934 -0.5139 -0.8899 31 1 3.7861 -0.5729 -0.0005 32 1 6.2257 -0.2516 -0.0012 33 1 7.8783 2.8198 -0.4814 34 1 10.1875 1.4882 -0.2580 35 1 9.9433 2.4178 1.2402 36 1 10.0070 0.3154 2.5540 37 1 10.2511 -0.6136 1.0555 38 1 12.3570 0.6256 0.6313 39 1 12.1124 1.5541 2.1300 40 1 12.1763 -0.5490 3.4426 41 1 12.4209 -1.4771 1.9435 42 1 14.9463 -2.8362 4.2539 43 1 5.9666 4.7170 -1.0313 44 1 5.1453 5.0577 0.5105 45 1 6.7903 4.3780 0.5097 46 1 3.2259 3.6635 -0.0114 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588152644.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:26 Heat of formation + Delta-G solvation = -100.010718 kcal Electronic energy + Delta-G solvation = -23662.304169 eV Core-core repulsion = 20129.273799 eV Total energy + Delta-G solvation = -3533.030370 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.79858 -40.64116 -38.75971 -36.64759 -35.51621 -34.61782 -33.51175 -32.71686 -31.62293 -29.75720 -28.08587 -27.19696 -24.71346 -24.49294 -23.44745 -21.87146 -21.69877 -21.24066 -18.87127 -18.63882 -18.38061 -17.97482 -17.16139 -17.02045 -16.58244 -16.48219 -15.64860 -15.39436 -15.23547 -14.80853 -14.73115 -14.50920 -14.22083 -13.91089 -13.82179 -13.63556 -13.60117 -13.37908 -13.26768 -12.82258 -12.75011 -12.74339 -12.59991 -12.37287 -12.16169 -12.12812 -11.99047 -11.75027 -11.36950 -11.34215 -11.16679 -10.93194 -10.70097 -10.53878 -9.80659 -8.72333 -8.18141 -6.30405 0.23735 0.32402 1.40754 1.44749 1.52568 1.58118 2.05319 2.25250 2.42517 2.71731 3.14502 3.68178 3.81953 3.84485 4.02779 4.03250 4.07847 4.14924 4.15511 4.29850 4.35238 4.44032 4.56607 4.68882 4.69635 4.76861 4.83718 4.84099 4.88026 4.92311 4.92753 5.04031 5.19241 5.19751 5.24049 5.33562 5.35753 5.36751 5.40447 5.46993 5.57651 5.78915 5.82756 5.88818 6.25724 6.41847 6.44550 6.88107 7.16544 7.39223 8.93805 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.028984 B = 0.001980 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.803480 B =14137.411284 C =14957.320253 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 O -0.328 6.328 4 C 0.109 3.891 5 C -0.205 4.205 6 C -0.099 4.099 7 C 0.092 3.908 8 N -0.657 5.657 9 C 0.510 3.490 10 O -0.567 6.567 11 C -0.125 4.125 12 C -0.097 4.097 13 C -0.096 4.096 14 C 0.018 3.982 15 C -0.543 4.543 16 H 0.067 0.933 17 C -0.007 4.007 18 N -0.938 5.938 19 Si 0.970 3.030 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.264 1.264 23 C -0.067 4.067 24 C -0.115 4.115 25 C -0.143 4.143 26 H 0.067 0.933 27 H 0.097 0.903 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.138 0.862 32 H 0.121 0.879 33 H 0.428 0.572 34 H 0.125 0.875 35 H 0.124 0.876 36 H 0.042 0.958 37 H 0.044 0.956 38 H 0.062 0.938 39 H 0.062 0.938 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.262 0.738 43 H 0.095 0.905 44 H 0.084 0.916 45 H 0.074 0.926 46 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.805 14.093 -12.654 32.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.030 4.030 3 O -0.242 6.242 4 C 0.063 3.937 5 C -0.224 4.224 6 C -0.119 4.119 7 C -0.002 4.002 8 N -0.304 5.304 9 C 0.300 3.700 10 O -0.445 6.445 11 C -0.164 4.164 12 C -0.135 4.135 13 C -0.133 4.133 14 C -0.020 4.020 15 C -0.581 4.581 16 H 0.085 0.915 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.794 3.206 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.189 1.189 23 C -0.069 4.069 24 C -0.171 4.171 25 C -0.162 4.162 26 H 0.086 0.914 27 H 0.115 0.885 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.155 0.845 32 H 0.139 0.861 33 H 0.267 0.733 34 H 0.143 0.857 35 H 0.142 0.858 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.002 0.998 41 H 0.003 0.997 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.103 0.897 45 H 0.092 0.908 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -26.197 13.406 -12.169 31.845 hybrid contribution 1.094 -0.765 0.305 1.369 sum -25.103 12.641 -11.864 30.508 Atomic orbital electron populations 1.21792 0.91118 1.04126 1.03378 1.23031 0.97116 0.81008 1.01891 1.86046 1.18521 1.30867 1.88801 1.19105 0.82609 0.94332 0.97611 1.21239 0.93385 0.99019 1.08738 1.21101 0.95047 0.97003 0.98750 1.17677 0.83560 0.93404 1.05578 1.43405 1.03892 1.31100 1.52001 1.21477 0.90419 0.81802 0.76308 1.90693 1.76866 1.29701 1.47221 1.21690 0.88261 1.01795 1.04651 1.21253 0.95119 0.97753 0.99355 1.21447 0.93146 0.98673 1.00053 1.19066 0.94802 0.94066 0.94017 1.21740 0.94004 1.08778 1.33549 0.91479 1.26101 1.04463 0.94821 0.95069 1.70131 1.37551 1.13828 1.36312 0.85432 0.78560 0.77971 0.78657 1.18897 1.21153 1.18897 1.19792 0.91909 0.95878 0.99365 1.20862 1.01810 0.90291 1.04145 1.20365 0.94267 0.95206 1.06372 0.91428 0.88463 0.91756 0.91972 0.91379 0.84474 0.86135 0.73266 0.85735 0.85762 0.93896 0.93754 0.91904 0.91938 0.99779 0.99735 0.92891 0.88686 0.89690 0.90752 0.83069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 10.28 71.98 0.74 -0.69 16 2 C 0.04 0.64 5.46 71.98 0.39 1.03 16 3 O -0.33 -6.56 10.14 -93.21 -0.94 -7.51 16 4 C 0.11 2.37 6.69 22.50 0.15 2.52 16 5 C -0.20 -4.79 9.03 22.35 0.20 -4.59 16 6 C -0.10 -2.65 8.70 22.38 0.19 -2.45 16 7 C 0.09 2.10 6.29 38.11 0.24 2.34 16 8 N -0.66 -12.86 4.75 -303.40 -1.44 -14.30 16 9 C 0.51 13.55 7.68 87.66 0.67 14.23 16 10 O -0.57 -20.69 13.40 -3.05 -0.04 -20.73 16 11 C -0.12 -2.88 5.70 29.85 0.17 -2.71 16 12 C -0.10 -3.40 4.50 30.59 0.14 -3.26 16 13 C -0.10 -3.83 5.15 30.59 0.16 -3.68 16 14 C 0.02 0.97 4.97 29.85 0.15 1.11 16 15 C -0.54 -31.41 9.11 25.60 0.23 -31.18 16 16 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 17 C -0.01 -0.43 5.46 84.65 0.46 0.03 16 18 N -0.94 -59.15 13.29 21.45 0.28 -58.86 16 19 Si 0.97 44.74 29.54 68.60 2.03 46.77 16 20 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 21 H -0.29 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 C -0.07 -1.21 5.89 -19.76 -0.12 -1.33 16 24 C -0.11 -1.18 9.47 71.24 0.67 -0.50 16 25 C -0.14 -2.71 9.63 22.35 0.22 -2.49 16 26 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.06 0.88 7.66 -2.38 -0.02 0.87 16 30 H 0.07 0.88 7.66 -2.39 -0.02 0.86 16 31 H 0.14 2.77 6.29 -2.91 -0.02 2.75 16 32 H 0.12 3.76 6.20 -2.91 -0.02 3.74 16 33 H 0.43 4.85 7.85 -92.71 -0.73 4.12 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.16 16 35 H 0.12 2.19 8.14 -2.38 -0.02 2.17 16 36 H 0.04 1.67 8.10 -2.39 -0.02 1.65 16 37 H 0.04 1.71 8.10 -2.39 -0.02 1.69 16 38 H 0.06 2.33 8.14 -2.38 -0.02 2.31 16 39 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 40 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 41 H -0.02 -0.95 8.14 -2.38 -0.02 -0.97 16 42 H 0.26 15.55 8.31 -92.70 -0.77 14.78 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 45 H 0.07 0.71 7.16 -2.39 -0.02 0.69 16 46 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -78.06 379.08 4.79 -73.26 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: 0.23 Total: 12.98 kcal Atomic # 6 Polarization: -36.29 SS G_CDS: 4.68 Total: -31.62 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -1.16 Total: -73.16 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.99 Total: -28.24 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -78.06 4.79 -73.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588152644.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.747 kcal (2) G-P(sol) polarization free energy of solvation -78.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds