Wall clock time and date at job start Tue Mar 31 2020 09:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47152 * 2 1 4 4 C 1.35896 * 116.99833 * 180.02562 * 3 2 1 5 5 C 1.38617 * 120.02537 * 0.02562 * 4 3 2 6 6 C 1.38753 * 119.87734 * 180.02562 * 5 4 3 7 7 N 1.39928 * 120.04151 * 179.97438 * 6 5 4 8 8 C 1.34774 * 120.00038 * 144.90554 * 7 6 5 9 9 O 1.21289 * 119.99663 * 4.62227 * 8 7 6 10 10 C 1.50699 * 119.99921 * 184.61636 * 8 7 6 11 11 C 1.53005 * 109.46916 * 180.02562 * 10 8 7 12 12 C 1.52998 * 109.46871 * 180.02562 * 11 10 8 13 13 C 1.53005 * 109.46871 * 179.97438 * 12 11 10 14 14 C 1.50702 * 109.46936 * 180.02562 * 13 12 11 15 15 H 1.08002 * 120.00183 * 359.97438 * 14 13 12 16 16 C 1.37882 * 119.99881 * 180.02562 * 14 13 12 17 17 N 1.31509 * 119.99698 * 359.97438 * 16 14 13 18 18 Si 1.86796 * 119.99718 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.47644 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47329 * 120.00008 * 18 16 14 21 21 H 1.48505 * 109.46894 * 239.99528 * 18 16 14 22 22 C 1.38928 * 119.91651 * 359.97438 * 6 5 4 23 23 C 1.38121 * 120.04103 * 359.97438 * 22 6 5 24 24 C 1.38218 * 120.12166 * 359.75378 * 23 22 6 25 25 C 1.50703 * 119.95831 * 180.25602 * 24 23 22 26 26 H 1.08998 * 109.46993 * 299.99393 * 1 2 3 27 27 H 1.09003 * 109.47378 * 59.99872 * 1 2 3 28 28 H 1.09004 * 109.46931 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47177 * 120.00234 * 2 1 3 30 30 H 1.09007 * 109.46979 * 240.00333 * 2 1 3 31 31 H 1.08007 * 120.05928 * 359.97438 * 5 4 3 32 32 H 0.97002 * 119.99804 * 324.90797 * 7 6 5 33 33 H 1.08994 * 109.47216 * 300.00387 * 10 8 7 34 34 H 1.08999 * 109.46852 * 60.00438 * 10 8 7 35 35 H 1.09003 * 109.47075 * 300.00099 * 11 10 8 36 36 H 1.08994 * 109.47221 * 59.99937 * 11 10 8 37 37 H 1.08992 * 109.47532 * 300.00154 * 12 11 10 38 38 H 1.09006 * 109.47437 * 60.00233 * 12 11 10 39 39 H 1.09003 * 109.47075 * 299.99841 * 13 12 11 40 40 H 1.08994 * 109.47221 * 59.99679 * 13 12 11 41 41 H 0.97000 * 119.99655 * 179.97438 * 17 16 14 42 42 H 1.08002 * 119.98202 * 179.97438 * 22 6 5 43 43 H 1.08000 * 119.94137 * 180.02562 * 23 22 6 44 44 H 1.08998 * 109.47441 * 270.26447 * 25 24 23 45 45 H 1.08999 * 109.46544 * 30.26213 * 25 24 23 46 46 H 1.08999 * 109.47271 * 150.25903 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1984 0.4263 -0.0016 6 6 5.5735 0.6116 -0.0016 7 7 6.4295 -0.4953 -0.0021 8 6 7.5972 -0.4438 -0.6732 9 8 7.9451 0.5885 -1.2065 10 6 8.4704 -1.6689 -0.7609 11 6 9.7267 -1.3427 -1.5710 12 6 10.6130 -2.5866 -1.6606 13 6 11.8690 -2.2606 -2.4713 14 6 12.7417 -3.4860 -2.5601 15 1 12.4317 -4.4053 -2.0854 16 6 13.9364 -3.4333 -3.2464 17 7 14.3140 -2.3138 -3.8239 18 14 15.0184 -4.9521 -3.3558 19 1 14.3729 -6.0734 -2.6270 20 1 15.2017 -5.3277 -4.7807 21 1 16.3412 -4.6624 -2.7462 22 6 6.0994 1.8975 -0.0011 23 6 5.2544 2.9901 -0.0011 24 6 3.8844 2.8074 -0.0068 25 6 2.9658 4.0022 -0.0126 26 1 -0.3633 0.5137 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5138 0.8899 30 1 1.8933 -0.5138 -0.8901 31 1 3.7870 -0.5723 -0.0016 32 1 6.1825 -1.2996 0.4805 33 1 8.7570 -1.9834 0.2425 34 1 7.9205 -2.4727 -1.2505 35 1 9.4404 -1.0279 -2.5746 36 1 10.2764 -0.5390 -1.0812 37 1 10.8993 -2.9018 -0.6573 38 1 10.0631 -3.3901 -2.1508 39 1 11.5823 -1.9457 -3.4747 40 1 12.4191 -1.4570 -1.9816 41 1 15.1547 -2.2766 -4.3064 42 1 7.1695 2.0430 -0.0007 43 1 5.6649 3.9891 -0.0011 44 1 2.7437 4.2948 1.0136 45 1 3.4504 4.8304 -0.5297 46 1 2.0392 3.7456 -0.5260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588155943.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:27:40 Heat of formation + Delta-G solvation = -100.870863 kcal Electronic energy + Delta-G solvation = -23656.228403 eV Core-core repulsion = 20123.160735 eV Total energy + Delta-G solvation = -3533.067668 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.80076 -40.70832 -38.53015 -36.70198 -36.04250 -34.63787 -32.99344 -32.44220 -31.36111 -30.73236 -28.03624 -26.72937 -25.01810 -24.38620 -23.09470 -22.24642 -21.72019 -21.27323 -19.38867 -18.41296 -18.32383 -17.25225 -17.02853 -16.91752 -16.71542 -16.51710 -16.25425 -15.55264 -15.21698 -14.74524 -14.65581 -14.56025 -14.42697 -13.84283 -13.61586 -13.59327 -13.45344 -13.31707 -13.28165 -12.91015 -12.82279 -12.78898 -12.41292 -12.31901 -12.15960 -12.14046 -11.97308 -11.75467 -11.38337 -11.35371 -11.17075 -11.02263 -10.75046 -10.55825 -9.57160 -8.85579 -8.18948 -6.30926 0.17533 0.41884 1.40415 1.41230 1.54368 1.54703 1.96792 2.26215 2.41782 2.73192 3.13922 3.66632 3.82441 3.94762 4.01912 4.07154 4.13338 4.13954 4.18635 4.28485 4.39751 4.48925 4.51672 4.67428 4.67851 4.77326 4.82553 4.85911 4.86818 4.89787 4.96164 5.05691 5.17873 5.19627 5.26845 5.32898 5.36679 5.37392 5.48316 5.54647 5.57621 5.78460 5.84550 5.88560 6.25263 6.37341 6.44551 6.88018 7.11196 7.38727 8.93445 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.029561 B = 0.001963 C = 0.001871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 946.963443 B =14260.191788 C =14963.217787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.043 3.957 3 O -0.321 6.321 4 C 0.138 3.862 5 C -0.229 4.229 6 C 0.167 3.833 7 N -0.662 5.662 8 C 0.512 3.488 9 O -0.560 6.560 10 C -0.124 4.124 11 C -0.097 4.097 12 C -0.096 4.096 13 C 0.017 3.983 14 C -0.540 4.540 15 H 0.067 0.933 16 C -0.008 4.008 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.257 1.257 20 H -0.280 1.280 21 H -0.279 1.279 22 C -0.178 4.178 23 C -0.070 4.070 24 C -0.146 4.146 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.066 0.934 31 H 0.155 0.845 32 H 0.429 0.571 33 H 0.126 0.874 34 H 0.124 0.876 35 H 0.043 0.957 36 H 0.045 0.955 37 H 0.062 0.938 38 H 0.062 0.938 39 H -0.016 1.016 40 H -0.015 1.015 41 H 0.262 0.738 42 H 0.119 0.881 43 H 0.145 0.855 44 H 0.075 0.925 45 H 0.074 0.926 46 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.568 4.463 12.700 33.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.032 4.032 3 O -0.235 6.235 4 C 0.092 3.908 5 C -0.250 4.250 6 C 0.072 3.928 7 N -0.309 5.309 8 C 0.302 3.698 9 O -0.438 6.438 10 C -0.163 4.163 11 C -0.135 4.135 12 C -0.133 4.133 13 C -0.020 4.020 14 C -0.578 4.578 15 H 0.085 0.915 16 C -0.205 4.205 17 N -0.578 5.578 18 Si 0.794 3.206 19 H -0.180 1.180 20 H -0.205 1.205 21 H -0.205 1.205 22 C -0.198 4.198 23 C -0.089 4.089 24 C -0.147 4.147 25 C -0.154 4.154 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.172 0.828 32 H 0.269 0.731 33 H 0.144 0.856 34 H 0.142 0.858 35 H 0.062 0.938 36 H 0.064 0.936 37 H 0.081 0.919 38 H 0.080 0.920 39 H 0.003 0.997 40 H 0.003 0.997 41 H 0.071 0.929 42 H 0.137 0.863 43 H 0.163 0.837 44 H 0.093 0.907 45 H 0.093 0.907 46 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -30.323 5.330 12.210 33.120 hybrid contribution 1.149 -0.828 -0.293 1.446 sum -29.173 4.503 11.917 31.834 Atomic orbital electron populations 1.21795 0.91424 1.04121 1.03223 1.23077 0.96944 0.80895 1.02241 1.86070 1.17996 1.31029 1.88420 1.18604 0.82701 0.93235 0.96254 1.21052 0.91500 0.99806 1.12644 1.17620 0.89362 0.87403 0.98380 1.43485 1.18989 1.16658 1.51802 1.21501 0.81168 0.90888 0.76280 1.90713 1.72355 1.33880 1.46819 1.21695 0.95001 0.94970 1.04682 1.21263 0.95044 0.97879 0.99350 1.21445 0.95291 0.96548 1.00031 1.19074 0.93494 0.95405 0.94031 1.21793 1.04818 0.98173 1.33033 0.91504 1.26104 0.99754 0.99542 0.95142 1.70138 1.23150 1.28387 1.36153 0.85329 0.78198 0.79131 0.77947 1.18040 1.20538 1.20526 1.21241 1.00792 0.91979 1.05794 1.20974 0.91646 0.99295 0.96967 1.19558 0.94371 0.93593 1.07191 1.20575 0.97944 0.94144 1.02764 0.91616 0.91987 0.88365 0.90815 0.91565 0.82751 0.73121 0.85641 0.85780 0.93838 0.93640 0.91890 0.91976 0.99744 0.99671 0.92887 0.86305 0.83684 0.90683 0.90748 0.91529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 10.28 71.98 0.74 -0.36 16 2 C 0.04 0.47 5.46 71.98 0.39 0.86 16 3 O -0.32 -5.64 9.17 -92.38 -0.85 -6.48 16 4 C 0.14 2.78 6.66 22.49 0.15 2.93 16 5 C -0.23 -4.31 8.95 22.48 0.20 -4.11 16 6 C 0.17 3.83 6.30 38.14 0.24 4.07 16 7 N -0.66 -12.93 5.33 -303.55 -1.62 -14.55 16 8 C 0.51 13.52 7.67 87.66 0.67 14.19 16 9 O -0.56 -20.35 13.42 -3.06 -0.04 -20.39 16 10 C -0.12 -2.84 5.70 29.85 0.17 -2.67 16 11 C -0.10 -3.40 4.50 30.60 0.14 -3.26 16 12 C -0.10 -3.82 5.15 30.60 0.16 -3.66 16 13 C 0.02 0.93 4.97 29.85 0.15 1.08 16 14 C -0.54 -31.22 9.11 25.60 0.23 -30.98 16 15 H 0.07 3.62 7.74 -2.91 -0.02 3.59 16 16 C -0.01 -0.49 5.46 84.66 0.46 -0.03 16 17 N -0.94 -59.07 13.29 21.45 0.28 -58.78 16 18 Si 0.97 44.78 29.54 68.60 2.03 46.80 16 19 H -0.26 -11.07 7.11 99.48 0.71 -10.37 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 C -0.18 -4.69 8.69 22.41 0.19 -4.49 16 23 C -0.07 -1.57 9.69 22.24 0.22 -1.35 16 24 C -0.15 -3.00 5.90 -19.74 -0.12 -3.12 16 25 C -0.10 -1.52 9.79 71.24 0.70 -0.82 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.49 16 27 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 29 H 0.07 0.62 7.66 -2.39 -0.02 0.60 16 30 H 0.07 0.66 7.66 -2.38 -0.02 0.64 16 31 H 0.15 1.98 6.30 -2.91 -0.02 1.96 16 32 H 0.43 4.69 8.82 -92.71 -0.82 3.88 16 33 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 34 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.04 1.68 8.10 -2.39 -0.02 1.66 16 36 H 0.04 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 39 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 40 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 41 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 42 H 0.12 3.67 6.22 -2.91 -0.02 3.65 16 43 H 0.15 2.64 8.06 -2.91 -0.02 2.61 16 44 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 45 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 46 H 0.07 1.05 7.53 -2.39 -0.02 1.03 16 Total: -1.00 -77.65 380.35 4.64 -73.01 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.14 Total: 12.12 kcal Atomic # 6 Polarization: -36.42 SS G_CDS: 4.70 Total: -31.72 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -1.33 Total: -73.33 kcal Atomic # 8 Polarization: -25.99 SS G_CDS: -0.89 Total: -26.87 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.80 kcal Total: -77.65 4.64 -73.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155943.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.862 kcal (2) G-P(sol) polarization free energy of solvation -77.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.871 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds