Wall clock time and date at job start Tue Mar 31 2020 09:49:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47014 * 2 1 4 4 C 1.42900 * 114.00217 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47447 * 179.97438 * 4 3 2 6 6 C 1.38304 * 119.96585 * 269.97954 * 5 4 3 7 7 C 1.38263 * 120.14321 * 180.02562 * 6 5 4 8 8 C 1.38140 * 120.06595 * 359.67702 * 7 6 5 9 9 C 1.38845 * 119.92759 * 0.59742 * 8 7 6 10 10 N 1.39931 * 120.06767 * 179.69839 * 9 8 7 11 11 C 1.34778 * 119.99802 * 326.55021 * 10 9 8 12 12 O 1.21290 * 120.00242 * 354.72922 * 11 10 9 13 13 C 1.50705 * 119.99779 * 174.72746 * 11 10 9 14 14 C 1.53001 * 109.46848 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46602 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46434 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46681 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99706 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00515 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99769 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47397 * 59.99678 * 21 19 17 23 23 H 1.48504 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46920 * 300.00086 * 21 19 17 25 25 C 1.38089 * 119.96715 * 89.99982 * 5 4 3 26 26 H 1.08997 * 109.46930 * 60.00531 * 1 2 3 27 27 H 1.09006 * 109.46659 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47243 * 299.99755 * 1 2 3 29 29 H 1.08997 * 109.47264 * 239.99464 * 2 1 3 30 30 H 1.09007 * 109.47087 * 119.99437 * 2 1 3 31 31 H 1.09006 * 109.46954 * 59.99671 * 4 3 2 32 32 H 1.09000 * 109.47327 * 299.99917 * 4 3 2 33 33 H 1.08005 * 119.93163 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.96605 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.03164 * 180.32210 * 8 7 6 36 36 H 0.96995 * 119.99879 * 146.55091 * 10 9 8 37 37 H 1.08999 * 109.46557 * 60.00179 * 13 11 10 38 38 H 1.08999 * 109.47090 * 300.00185 * 13 11 10 39 39 H 1.08999 * 109.47457 * 299.99998 * 14 13 11 40 40 H 1.08994 * 109.46896 * 60.00670 * 14 13 11 41 41 H 1.08997 * 109.47294 * 299.99569 * 15 14 13 42 42 H 1.08994 * 109.47093 * 60.00614 * 15 14 13 43 43 H 1.08999 * 109.47253 * 299.99595 * 16 15 14 44 44 H 1.08999 * 109.47736 * 60.00410 * 16 15 14 45 45 H 0.97001 * 120.00185 * 179.97438 * 20 19 17 46 46 H 1.08009 * 120.03194 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 6 3.9985 3.5828 -1.1986 7 6 4.3555 4.9185 -1.2035 8 6 4.5280 5.5932 -0.0105 9 6 4.3545 4.9253 1.1944 10 7 4.5346 5.6042 2.4046 11 6 5.4568 6.5827 2.4976 12 8 6.1957 6.8105 1.5631 13 6 5.5698 7.3939 3.7626 14 6 6.6858 8.4290 3.6067 15 6 6.8009 9.2520 4.8914 16 6 7.9164 10.2875 4.7352 17 6 8.0294 11.0987 6.0003 18 1 7.3711 10.8962 6.8322 19 6 8.9732 12.0993 6.0956 20 7 9.7744 12.3463 5.0823 21 14 9.1138 13.1043 7.6639 22 1 9.4291 12.2041 8.8022 23 1 10.1972 14.1086 7.5128 24 1 7.8270 13.7987 7.9238 25 6 3.9967 3.5833 1.1959 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9768 0.8908 33 1 3.8591 3.0589 -2.1327 34 1 4.4950 5.4362 -2.1410 35 1 4.8018 6.6379 -0.0150 36 1 3.9958 5.3707 3.1766 37 1 5.8015 6.7334 4.5982 38 1 4.6252 7.9033 3.9532 39 1 7.6302 7.9192 3.4164 40 1 6.4544 9.0895 2.7711 41 1 5.8566 9.7619 5.0821 42 1 7.0324 8.5913 5.7267 43 1 8.8609 9.7781 4.5442 44 1 7.6845 10.9483 3.8999 45 1 10.4381 13.0505 5.1493 46 1 3.8574 3.0620 2.1315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000588155992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:45 Heat of formation + Delta-G solvation = -85.099828 kcal Electronic energy + Delta-G solvation = -23211.077886 eV Core-core repulsion = 19678.694101 eV Total energy + Delta-G solvation = -3532.383785 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.67870 -39.14478 -37.96941 -35.18175 -34.76057 -32.76994 -32.54807 -30.96882 -30.48029 -29.17637 -26.28166 -25.73727 -23.21031 -23.18496 -22.53356 -21.50275 -20.02148 -20.00488 -17.79920 -17.07211 -16.86977 -16.53183 -16.34578 -16.13235 -15.80304 -15.03558 -14.95855 -14.47023 -14.19619 -13.96497 -13.76405 -13.48121 -13.28280 -12.77738 -12.75055 -12.62666 -12.23372 -11.94971 -11.81654 -11.69553 -11.64032 -11.60324 -11.37320 -10.97772 -10.55639 -10.54145 -10.47325 -10.42990 -10.04714 -9.87079 -9.62110 -9.24119 -9.06619 -8.99894 -8.30113 -8.28109 -5.94940 -3.97682 1.04932 1.12235 2.56335 2.92828 3.25631 3.35516 3.39980 3.42151 3.78056 4.46458 4.48917 4.53934 4.60796 4.68319 4.78498 4.84531 4.91562 4.95691 5.03095 5.17207 5.23031 5.26290 5.30135 5.37406 5.40331 5.44406 5.48704 5.67509 5.72204 5.81021 6.10130 6.11096 6.16209 6.26664 6.34440 6.35490 6.51699 6.75923 6.81326 6.84852 6.99182 7.18175 7.26130 7.73618 7.89519 8.05732 8.07705 8.47691 9.09721 9.65959 11.16264 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.001759 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.683492 B =15917.162974 C =16435.696413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.383 6.383 4 C 0.106 3.894 5 C -0.076 4.076 6 C -0.118 4.118 7 C -0.102 4.102 8 C -0.114 4.114 9 C 0.151 3.849 10 N -0.682 5.682 11 C 0.512 3.488 12 O -0.514 6.514 13 C -0.137 4.137 14 C -0.104 4.104 15 C -0.110 4.110 16 C 0.020 3.980 17 C -0.522 4.522 18 H 0.054 0.946 19 C 0.056 3.944 20 N -0.895 5.895 21 Si 0.892 3.108 22 H -0.277 1.277 23 H -0.287 1.287 24 H -0.277 1.277 25 C -0.128 4.128 26 H 0.063 0.937 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.137 0.863 36 H 0.411 0.589 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.064 0.936 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.260 0.740 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.921 -25.912 -11.139 33.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.303 6.303 4 C 0.030 3.970 5 C -0.076 4.076 6 C -0.137 4.137 7 C -0.120 4.120 8 C -0.134 4.134 9 C 0.056 3.944 10 N -0.328 5.328 11 C 0.301 3.699 12 O -0.387 6.387 13 C -0.177 4.177 14 C -0.142 4.142 15 C -0.148 4.148 16 C -0.017 4.017 17 C -0.560 4.560 18 H 0.072 0.928 19 C -0.145 4.145 20 N -0.534 5.534 21 Si 0.720 3.280 22 H -0.203 1.203 23 H -0.213 1.213 24 H -0.203 1.203 25 C -0.149 4.149 26 H 0.082 0.918 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.155 0.845 36 H 0.246 0.754 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.070 0.930 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -17.330 -25.398 -11.814 32.938 hybrid contribution 0.059 0.201 1.269 1.287 sum -17.270 -25.197 -10.544 32.316 Atomic orbital electron populations 1.21744 0.93645 1.02234 1.03270 1.22480 0.95716 0.83819 1.00083 1.87990 1.20504 1.26350 1.95418 1.21273 0.81754 0.93041 1.00930 1.19262 1.00731 0.94636 0.93017 1.20983 1.00614 0.94779 0.97301 1.21043 0.98766 0.94327 0.97911 1.21268 1.00096 1.01159 0.90917 1.17736 0.99480 0.90927 0.86231 1.43767 1.39576 1.37182 1.12241 1.21353 0.78485 0.79315 0.90783 1.90726 1.41282 1.66600 1.40137 1.21829 1.03057 0.98627 0.94218 1.21476 0.96534 0.96140 1.00064 1.21652 1.00736 0.97897 0.94521 1.19094 0.92816 0.92878 0.96943 1.21248 1.17564 1.16850 1.00376 0.92797 1.25037 0.95795 0.97348 0.96325 1.69963 1.20937 1.31917 1.30602 0.86672 0.77619 0.79952 0.83802 1.20299 1.21307 1.20285 1.20724 1.03767 0.92171 0.98223 0.91801 0.91094 0.91791 0.93380 0.93373 0.92320 0.92440 0.86000 0.85458 0.84530 0.75354 0.88801 0.88657 0.91688 0.91682 0.93406 0.93417 0.96574 0.96569 0.92988 0.85734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.79 10.28 37.16 0.38 -0.41 16 2 C 0.06 0.34 6.66 37.16 0.25 0.59 16 3 O -0.38 -3.44 10.33 -35.23 -0.36 -3.80 16 4 C 0.11 0.83 6.06 36.00 0.22 1.04 16 5 C -0.08 -0.74 5.51 -104.65 -0.58 -1.31 16 6 C -0.12 -1.14 9.70 -39.55 -0.38 -1.52 16 7 C -0.10 -1.08 10.04 -39.61 -0.40 -1.48 16 8 C -0.11 -1.44 8.66 -39.39 -0.34 -1.78 16 9 C 0.15 1.77 6.28 -83.70 -0.53 1.24 16 10 N -0.68 -7.25 5.34 -9.86 -0.05 -7.30 16 11 C 0.51 6.97 7.57 -10.98 -0.08 6.88 16 12 O -0.51 -9.02 13.68 5.55 0.08 -8.95 16 13 C -0.14 -1.74 5.70 -27.88 -0.16 -1.90 16 14 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 15 C -0.11 -2.25 5.15 -26.73 -0.14 -2.38 16 16 C 0.02 0.52 4.97 -27.88 -0.14 0.38 16 17 C -0.52 -15.04 9.11 -34.44 -0.31 -15.36 16 18 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 20 N -0.89 -27.50 13.29 55.43 0.74 -26.76 16 21 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.13 -1.29 9.62 -39.40 -0.38 -1.67 16 26 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.06 0.38 8.08 -51.93 -0.42 -0.04 16 33 H 0.12 0.92 8.06 -52.48 -0.42 0.50 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.14 1.92 6.43 -52.49 -0.34 1.58 16 36 H 0.41 2.94 8.82 -40.82 -0.36 2.58 16 37 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 40 H 0.06 1.21 8.10 -51.93 -0.42 0.79 16 41 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 46 H 0.12 1.01 8.06 -52.48 -0.42 0.58 16 LS Contribution 386.15 15.07 5.82 5.82 Total: -1.00 -34.55 386.15 -9.45 -44.00 By element: Atomic # 1 Polarization: 6.03 SS G_CDS: -7.84 Total: -1.81 kcal Atomic # 6 Polarization: -15.26 SS G_CDS: -2.80 Total: -18.07 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.68 Total: -34.06 kcal Atomic # 8 Polarization: -12.46 SS G_CDS: -0.29 Total: -12.75 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.55 -9.45 -44.00 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.104 kcal (2) G-P(sol) polarization free energy of solvation -34.546 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds