Wall clock time and date at job start Tue Mar 31 2020 09:49:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42899 * 109.47014 * 2 1 4 4 C 1.42900 * 114.00217 * 179.97438 * 3 2 1 5 5 C 1.50694 * 109.47447 * 179.97438 * 4 3 2 6 6 C 1.38304 * 119.96585 * 269.97954 * 5 4 3 7 7 C 1.38263 * 120.14321 * 180.02562 * 6 5 4 8 8 C 1.38140 * 120.06595 * 359.67702 * 7 6 5 9 9 C 1.38845 * 119.92759 * 0.59742 * 8 7 6 10 10 N 1.39931 * 120.06767 * 179.69839 * 9 8 7 11 11 C 1.34778 * 119.99802 * 326.55021 * 10 9 8 12 12 O 1.21290 * 120.00242 * 354.72922 * 11 10 9 13 13 C 1.50705 * 119.99779 * 174.72746 * 11 10 9 14 14 C 1.53001 * 109.46848 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46602 * 180.02562 * 14 13 11 16 16 C 1.52999 * 109.46434 * 180.02562 * 15 14 13 17 17 C 1.50705 * 109.46681 * 179.97438 * 16 15 14 18 18 H 1.08001 * 120.00016 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99706 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00515 * 0.02562 * 19 17 16 21 21 Si 1.86804 * 119.99769 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47397 * 59.99678 * 21 19 17 23 23 H 1.48504 * 109.47175 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46920 * 300.00086 * 21 19 17 25 25 C 1.38089 * 119.96715 * 89.99982 * 5 4 3 26 26 H 1.08997 * 109.46930 * 60.00531 * 1 2 3 27 27 H 1.09006 * 109.46659 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.47243 * 299.99755 * 1 2 3 29 29 H 1.08997 * 109.47264 * 239.99464 * 2 1 3 30 30 H 1.09007 * 109.47087 * 119.99437 * 2 1 3 31 31 H 1.09006 * 109.46954 * 59.99671 * 4 3 2 32 32 H 1.09000 * 109.47327 * 299.99917 * 4 3 2 33 33 H 1.08005 * 119.93163 * 0.02562 * 6 5 4 34 34 H 1.08001 * 119.96605 * 179.97438 * 7 6 5 35 35 H 1.08001 * 120.03164 * 180.32210 * 8 7 6 36 36 H 0.96995 * 119.99879 * 146.55091 * 10 9 8 37 37 H 1.08999 * 109.46557 * 60.00179 * 13 11 10 38 38 H 1.08999 * 109.47090 * 300.00185 * 13 11 10 39 39 H 1.08999 * 109.47457 * 299.99998 * 14 13 11 40 40 H 1.08994 * 109.46896 * 60.00670 * 14 13 11 41 41 H 1.08997 * 109.47294 * 299.99569 * 15 14 13 42 42 H 1.08994 * 109.47093 * 60.00614 * 15 14 13 43 43 H 1.08999 * 109.47253 * 299.99595 * 16 15 14 44 44 H 1.08999 * 109.47736 * 60.00410 * 16 15 14 45 45 H 0.97001 * 120.00185 * 179.97438 * 20 19 17 46 46 H 1.08009 * 120.03194 * 0.02562 * 25 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4602 0.0006 5 6 3.8194 2.9162 -0.0001 6 6 3.9985 3.5828 -1.1986 7 6 4.3555 4.9185 -1.2035 8 6 4.5280 5.5932 -0.0105 9 6 4.3545 4.9253 1.1944 10 7 4.5346 5.6042 2.4046 11 6 5.4568 6.5827 2.4976 12 8 6.1957 6.8105 1.5631 13 6 5.5698 7.3939 3.7626 14 6 6.6858 8.4290 3.6067 15 6 6.8009 9.2520 4.8914 16 6 7.9164 10.2875 4.7352 17 6 8.0294 11.0987 6.0003 18 1 7.3711 10.8962 6.8322 19 6 8.9732 12.0993 6.0956 20 7 9.7744 12.3463 5.0823 21 14 9.1138 13.1043 7.6639 22 1 9.4291 12.2041 8.8022 23 1 10.1972 14.1086 7.5128 24 1 7.8270 13.7987 7.9238 25 6 3.9967 3.5833 1.1959 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.8340 0.9765 -0.8892 32 1 3.8333 0.9768 0.8908 33 1 3.8591 3.0589 -2.1327 34 1 4.4950 5.4362 -2.1410 35 1 4.8018 6.6379 -0.0150 36 1 3.9958 5.3707 3.1766 37 1 5.8015 6.7334 4.5982 38 1 4.6252 7.9033 3.9532 39 1 7.6302 7.9192 3.4164 40 1 6.4544 9.0895 2.7711 41 1 5.8566 9.7619 5.0821 42 1 7.0324 8.5913 5.7267 43 1 8.8609 9.7781 4.5442 44 1 7.6845 10.9483 3.8999 45 1 10.4381 13.0505 5.1493 46 1 3.8574 3.0620 2.1315 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000588155992.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:44 Heat of formation + Delta-G solvation = -105.968992 kcal Electronic energy + Delta-G solvation = -23211.982840 eV Core-core repulsion = 19678.694101 eV Total energy + Delta-G solvation = -3533.288740 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.62704 -39.97120 -38.63351 -36.69994 -35.88217 -34.62982 -33.30423 -31.86058 -31.53882 -30.42202 -27.48521 -26.94111 -24.68999 -23.63293 -23.37170 -22.76688 -21.65581 -20.99667 -18.68919 -18.39752 -17.88270 -17.54667 -17.24052 -17.11985 -16.79547 -16.50865 -15.93813 -15.74142 -15.34243 -15.06168 -14.62919 -14.52950 -14.13679 -13.94551 -13.80561 -13.61583 -13.36664 -13.29635 -13.24153 -12.79243 -12.64537 -12.37667 -12.33307 -12.16720 -12.14218 -12.12458 -12.04752 -11.43457 -11.36295 -11.32174 -11.15528 -10.78956 -10.54961 -10.53947 -9.87266 -9.14292 -8.18167 -6.30518 0.21649 0.32029 1.40667 1.44591 1.52473 1.55963 2.01915 2.42403 2.58506 3.10815 3.14491 3.68237 3.82549 3.89974 4.00659 4.13856 4.14208 4.20627 4.29914 4.32753 4.37480 4.46422 4.53918 4.55879 4.64421 4.67717 4.73418 4.82697 4.86802 4.89332 4.97976 5.06185 5.18247 5.28339 5.30068 5.32872 5.33989 5.38743 5.51429 5.56921 5.58038 5.78471 5.88413 6.01376 6.25533 6.27178 6.40595 6.87822 7.11884 7.39160 8.93711 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.038469 B = 0.001759 C = 0.001703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.683492 B =15917.162974 C =16435.696413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.049 3.951 3 O -0.407 6.407 4 C 0.107 3.893 5 C -0.081 4.081 6 C -0.118 4.118 7 C -0.110 4.110 8 C -0.140 4.140 9 C 0.131 3.869 10 N -0.664 5.664 11 C 0.512 3.488 12 O -0.563 6.563 13 C -0.125 4.125 14 C -0.097 4.097 15 C -0.096 4.096 16 C 0.018 3.982 17 C -0.544 4.544 18 H 0.067 0.933 19 C -0.006 4.006 20 N -0.937 5.937 21 Si 0.969 3.031 22 H -0.264 1.264 23 H -0.285 1.285 24 H -0.265 1.265 25 C -0.126 4.126 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.144 0.856 34 H 0.140 0.860 35 H 0.112 0.888 36 H 0.429 0.571 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.044 0.956 40 H 0.044 0.956 41 H 0.061 0.939 42 H 0.062 0.938 43 H -0.015 1.015 44 H -0.016 1.016 45 H 0.263 0.737 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.747 -27.956 -9.501 35.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.027 4.027 3 O -0.327 6.327 4 C 0.031 3.969 5 C -0.082 4.082 6 C -0.137 4.137 7 C -0.128 4.128 8 C -0.161 4.161 9 C 0.037 3.963 10 N -0.310 5.310 11 C 0.302 3.698 12 O -0.441 6.441 13 C -0.164 4.164 14 C -0.135 4.135 15 C -0.133 4.133 16 C -0.019 4.019 17 C -0.582 4.582 18 H 0.085 0.915 19 C -0.203 4.203 20 N -0.578 5.578 21 Si 0.793 3.207 22 H -0.189 1.189 23 H -0.211 1.211 24 H -0.189 1.189 25 C -0.146 4.146 26 H 0.075 0.925 27 H 0.108 0.892 28 H 0.075 0.925 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.268 0.732 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.003 0.997 44 H 0.003 0.997 45 H 0.071 0.929 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -19.208 -27.483 -10.151 35.033 hybrid contribution 0.608 0.771 0.668 1.187 sum -18.600 -26.712 -9.483 33.903 Atomic orbital electron populations 1.21773 0.93327 1.03264 1.02515 1.22669 0.96039 0.82783 1.01169 1.87952 1.20985 1.28128 1.95643 1.21328 0.81556 0.91664 1.02390 1.19628 0.99837 0.95865 0.92843 1.21282 0.99599 0.94327 0.98492 1.21247 0.98656 0.95052 0.97844 1.21259 1.01847 1.00492 0.92462 1.17903 1.00459 0.91817 0.86093 1.43517 1.38751 1.36028 1.12737 1.21477 0.78345 0.79635 0.90370 1.90720 1.43442 1.68155 1.41758 1.21699 1.02234 0.97822 0.94684 1.21261 0.97745 0.96692 0.97810 1.21448 0.98738 0.96803 0.96351 1.19063 0.93768 0.93753 0.95350 1.21743 1.17870 1.17292 1.01296 0.91529 1.26085 0.95278 0.98747 1.00196 1.70126 1.21724 1.32718 1.33184 0.85444 0.78013 0.78146 0.79079 1.18919 1.21089 1.18936 1.20964 1.02791 0.91390 0.99494 0.92536 0.89202 0.92543 0.92241 0.92281 0.90826 0.91057 0.83817 0.84196 0.86980 0.73172 0.85712 0.85822 0.93734 0.93749 0.91988 0.91918 0.99697 0.99718 0.92885 0.83534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 10.28 71.98 0.74 -0.58 16 2 C 0.05 0.49 6.66 71.98 0.48 0.97 16 3 O -0.41 -6.44 10.33 -148.98 -1.54 -7.98 16 4 C 0.11 1.39 6.06 71.23 0.43 1.82 16 5 C -0.08 -1.43 5.51 -19.89 -0.11 -1.54 16 6 C -0.12 -2.13 9.70 22.29 0.22 -1.92 16 7 C -0.11 -2.33 10.04 22.25 0.22 -2.11 16 8 C -0.14 -3.66 8.66 22.39 0.19 -3.46 16 9 C 0.13 3.02 6.28 38.15 0.24 3.26 16 10 N -0.66 -13.32 5.34 -303.50 -1.62 -14.94 16 11 C 0.51 13.76 7.57 87.66 0.66 14.43 16 12 O -0.56 -20.67 13.68 -3.06 -0.04 -20.71 16 13 C -0.13 -2.94 5.70 29.85 0.17 -2.77 16 14 C -0.10 -3.43 4.50 30.60 0.14 -3.29 16 15 C -0.10 -3.87 5.15 30.60 0.16 -3.71 16 16 C 0.02 0.98 4.97 29.85 0.15 1.13 16 17 C -0.54 -31.58 9.11 25.60 0.23 -31.35 16 18 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 19 C -0.01 -0.34 5.46 84.66 0.46 0.12 16 20 N -0.94 -59.11 13.29 21.45 0.28 -58.82 16 21 Si 0.97 44.81 29.54 68.60 2.03 46.84 16 22 H -0.26 -11.61 7.11 99.48 0.71 -10.91 16 23 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 24 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 25 C -0.13 -2.33 9.62 22.39 0.22 -2.11 16 26 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 27 H 0.09 0.42 8.14 -2.38 -0.02 0.40 16 28 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.07 0.73 8.08 -2.38 -0.02 0.71 16 32 H 0.07 0.72 8.08 -2.39 -0.02 0.70 16 33 H 0.14 1.88 8.06 -2.91 -0.02 1.86 16 34 H 0.14 2.44 8.06 -2.91 -0.02 2.42 16 35 H 0.11 3.43 6.43 -2.91 -0.02 3.41 16 36 H 0.43 5.09 8.82 -92.71 -0.82 4.27 16 37 H 0.12 2.22 8.14 -2.39 -0.02 2.21 16 38 H 0.12 2.27 8.14 -2.39 -0.02 2.25 16 39 H 0.04 1.73 8.10 -2.39 -0.02 1.71 16 40 H 0.04 1.72 8.10 -2.39 -0.02 1.71 16 41 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 43 H -0.02 -0.93 8.14 -2.39 -0.02 -0.95 16 44 H -0.02 -0.94 8.14 -2.39 -0.02 -0.96 16 45 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 46 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -78.06 386.15 3.84 -74.22 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.13 Total: 12.52 kcal Atomic # 6 Polarization: -35.73 SS G_CDS: 4.60 Total: -31.12 kcal Atomic # 7 Polarization: -72.43 SS G_CDS: -1.34 Total: -73.76 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -1.58 Total: -28.69 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -78.06 3.84 -74.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000588155992.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.747 kcal (2) G-P(sol) polarization free energy of solvation -78.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds