Wall clock time and date at job start Tue Mar 31 2020 10:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99513 * 2 1 4 4 O 1.21283 * 119.99449 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00338 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47263 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47355 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47272 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47180 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00087 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00370 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00587 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99547 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46715 * 90.00548 * 13 11 9 15 15 H 1.48502 * 109.46926 * 209.99943 * 13 11 9 16 16 H 1.48495 * 109.47292 * 330.00375 * 13 11 9 17 17 C 1.46499 * 119.99870 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.46793 * 236.05225 * 17 2 1 19 19 C 1.52995 * 109.47380 * 356.05565 * 17 2 1 20 20 O 1.42907 * 109.46944 * 67.39448 * 19 17 2 21 21 C 1.50706 * 109.46937 * 116.06198 * 17 2 1 22 22 C 1.38238 * 119.99503 * 323.49813 * 21 17 2 23 23 C 1.38237 * 119.99383 * 179.78928 * 22 21 17 24 24 C 1.38236 * 120.00224 * 0.44946 * 23 22 21 25 25 C 1.38237 * 119.99941 * 359.80027 * 24 23 22 26 26 C 1.38231 * 119.99966 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47220 * 264.52601 * 1 2 3 28 28 H 1.08996 * 109.47827 * 24.52806 * 1 2 3 29 29 H 1.09008 * 109.47128 * 144.52938 * 1 2 3 30 30 H 1.09005 * 109.46933 * 299.99911 * 5 3 2 31 31 H 1.08999 * 109.47638 * 59.99733 * 5 3 2 32 32 H 1.09005 * 109.47008 * 299.99785 * 6 5 3 33 33 H 1.09004 * 109.47032 * 60.00043 * 6 5 3 34 34 H 1.09001 * 109.46914 * 300.00452 * 7 6 5 35 35 H 1.09006 * 109.47021 * 59.99648 * 7 6 5 36 36 H 1.09005 * 109.47268 * 300.00134 * 8 7 6 37 37 H 1.09006 * 109.47166 * 60.00005 * 8 7 6 38 38 H 0.96995 * 120.00136 * 179.97438 * 12 11 9 39 39 H 1.08991 * 109.47483 * 307.39476 * 19 17 2 40 40 H 1.09004 * 109.46905 * 187.39096 * 19 17 2 41 41 H 0.96700 * 113.99604 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.00267 * 0.02562 * 22 21 17 43 43 H 1.07995 * 119.99915 * 180.26829 * 23 22 21 44 44 H 1.07995 * 119.99993 * 179.83609 * 24 23 22 45 45 H 1.07997 * 120.00157 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00412 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6144 4.9603 -0.0002 8 6 2.6086 6.1232 -0.0004 9 6 1.8551 7.4283 0.0002 10 1 0.7751 7.4282 0.0002 11 6 2.5444 8.6224 -0.0003 12 7 1.8868 9.7613 -0.0003 13 14 4.4125 8.6224 -0.0010 14 1 4.9068 8.6222 -1.4014 15 1 4.9077 9.8351 0.6985 16 1 4.9078 7.4101 0.6990 17 6 2.1975 -1.2687 -0.0006 18 1 2.8761 -1.2968 0.8519 19 6 1.2063 -2.4300 0.0981 20 8 0.4303 -2.4970 -1.1000 21 6 2.9893 -1.3911 -1.2770 22 6 2.4667 -0.9105 -2.4632 23 6 3.1948 -1.0188 -3.6332 24 6 4.4415 -1.6160 -3.6188 25 6 4.9618 -2.1011 -2.4336 26 6 4.2357 -1.9887 -1.2627 27 1 -0.3633 -0.0980 1.0230 28 1 -0.3634 0.9349 -0.4266 29 1 -0.3634 -0.8370 -0.5964 30 1 0.7583 2.5302 -0.8892 31 1 0.7589 2.5299 0.8908 32 1 3.0068 3.5776 0.8894 33 1 3.0054 3.5775 -0.8907 34 1 0.9874 5.0177 -0.8899 35 1 0.9881 5.0182 0.8900 36 1 3.2354 6.0656 0.8896 37 1 3.2353 6.0654 -0.8904 38 1 2.3718 10.6013 -0.0003 39 1 0.5456 -2.2723 0.9505 40 1 1.7527 -3.3639 0.2298 41 1 -0.2205 -3.2122 -1.1076 42 1 1.4913 -0.4471 -2.4750 43 1 2.7885 -0.6395 -4.5592 44 1 5.0091 -1.7029 -4.5334 45 1 5.9355 -2.5681 -2.4224 46 1 4.6419 -2.3681 -0.3368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590864416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:38 Heat of formation + Delta-G solvation = -66.058396 kcal Electronic energy + Delta-G solvation = -25020.251047 eV Core-core repulsion = 21488.692960 eV Total energy + Delta-G solvation = -3531.558087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60894 -38.84010 -37.59729 -35.34267 -34.93505 -32.76945 -32.13469 -30.89305 -30.03323 -28.67699 -27.01116 -25.88259 -23.43070 -22.67942 -22.19681 -20.79745 -19.98415 -18.96656 -18.12252 -17.31268 -16.66422 -16.42781 -16.36461 -15.88367 -15.28484 -14.85891 -14.66347 -14.39366 -14.18363 -13.95885 -13.41553 -13.32317 -12.97231 -12.91453 -12.74443 -12.58880 -12.37989 -12.19082 -11.96912 -11.85554 -11.67407 -11.12373 -11.06951 -11.04663 -10.67520 -10.54396 -10.48363 -9.85725 -9.73594 -9.60571 -9.36862 -9.08487 -8.92332 -8.85710 -8.63457 -8.46535 -5.97881 -3.95087 1.29891 1.41256 2.74270 2.87502 3.37893 3.44596 3.51311 3.65135 3.83212 4.42596 4.50588 4.52907 4.77480 4.81775 4.90548 4.94382 5.03492 5.04966 5.10830 5.25691 5.29582 5.30922 5.36868 5.41308 5.49383 5.58165 5.68554 5.85753 5.91371 6.00717 6.08625 6.19305 6.31410 6.40697 6.46666 6.48799 6.62487 6.73594 6.87243 6.96601 7.03497 7.11794 7.33263 7.42382 7.55067 7.87953 8.26608 8.61433 9.07258 9.65757 11.15686 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002922 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.439103 B = 9581.186504 C =10447.332332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.615 5.615 3 C 0.511 3.489 4 O -0.527 6.527 5 C -0.136 4.136 6 C -0.106 4.106 7 C -0.102 4.102 8 C -0.015 4.015 9 C -0.518 4.518 10 H 0.071 0.929 11 C 0.065 3.935 12 N -0.907 5.907 13 Si 0.879 3.121 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.264 1.264 17 C 0.190 3.810 18 H 0.094 0.906 19 C 0.075 3.925 20 O -0.557 6.557 21 C -0.078 4.078 22 C -0.078 4.078 23 C -0.125 4.125 24 C -0.122 4.122 25 C -0.124 4.124 26 C -0.109 4.109 27 H 0.049 0.951 28 H 0.074 0.926 29 H 0.098 0.902 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.052 0.948 36 H 0.015 0.985 37 H 0.011 0.989 38 H 0.262 0.738 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.378 0.622 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.117 0.883 45 H 0.118 0.882 46 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.924 -31.884 -2.010 32.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.350 5.350 3 C 0.301 3.699 4 O -0.402 6.402 5 C -0.175 4.175 6 C -0.144 4.144 7 C -0.139 4.139 8 C -0.053 4.053 9 C -0.556 4.556 10 H 0.089 0.911 11 C -0.136 4.136 12 N -0.546 5.546 13 Si 0.707 3.293 14 H -0.203 1.203 15 H -0.215 1.215 16 H -0.189 1.189 17 C 0.087 3.913 18 H 0.112 0.888 19 C -0.003 4.003 20 O -0.362 6.362 21 C -0.079 4.079 22 C -0.097 4.097 23 C -0.143 4.143 24 C -0.140 4.140 25 C -0.142 4.142 26 C -0.128 4.128 27 H 0.068 0.932 28 H 0.092 0.908 29 H 0.116 0.884 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.071 0.929 36 H 0.034 0.966 37 H 0.029 0.971 38 H 0.072 0.928 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.226 0.774 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.135 0.865 45 H 0.136 0.864 46 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -1.881 -31.165 -2.147 31.295 hybrid contribution 0.560 -0.281 0.169 0.649 sum -1.321 -31.446 -1.978 31.536 Atomic orbital electron populations 1.22227 0.79278 1.05025 1.01953 1.47980 1.07044 1.04885 1.75125 1.21072 0.88286 0.85312 0.75277 1.90707 1.14056 1.87244 1.48189 1.21788 0.99958 0.91941 1.03847 1.21485 0.97155 0.92916 1.02817 1.21469 0.98622 0.92996 1.00850 1.19574 0.95321 0.94079 0.96294 1.21191 0.95027 0.89031 1.50392 0.91113 1.25038 0.98384 0.95548 0.94630 1.69918 1.35714 0.97390 1.51597 0.86780 0.86378 0.77629 0.78557 1.20309 1.21462 1.18897 1.19956 0.92205 0.83053 0.96086 0.88809 1.22313 0.93232 0.97166 0.87561 1.86581 1.54009 1.56201 1.39441 1.19805 0.94592 0.98808 0.94675 1.20830 0.99235 0.97859 0.91742 1.21130 0.95156 0.99841 0.98220 1.21104 0.96008 0.98934 0.97963 1.21018 0.99629 1.00786 0.92794 1.20877 0.94007 0.99777 0.98103 0.93239 0.90757 0.88385 0.89166 0.89174 0.91877 0.91881 0.92925 0.92895 0.96643 0.97079 0.92839 0.92303 0.92034 0.77407 0.86369 0.86399 0.86458 0.86365 0.86546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.44 9.12 59.85 0.55 0.99 16 2 N -0.61 -6.68 2.20 -175.26 -0.39 -7.06 16 3 C 0.51 7.39 7.15 -10.99 -0.08 7.31 16 4 O -0.53 -9.68 15.28 5.55 0.08 -9.59 16 5 C -0.14 -1.86 4.17 -27.88 -0.12 -1.97 16 6 C -0.11 -1.87 4.50 -26.73 -0.12 -2.00 16 7 C -0.10 -2.07 5.15 -26.73 -0.14 -2.21 16 8 C -0.02 -0.39 4.04 -27.89 -0.11 -0.50 16 9 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 10 H 0.07 2.22 7.99 -52.49 -0.42 1.80 16 11 C 0.06 1.95 5.47 -17.82 -0.10 1.85 16 12 N -0.91 -28.75 13.96 55.43 0.77 -27.97 16 13 Si 0.88 22.74 27.47 -169.99 -4.67 18.07 16 14 H -0.28 -7.05 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 16 H -0.26 -6.66 6.54 56.52 0.37 -6.29 16 17 C 0.19 1.89 2.68 -69.08 -0.18 1.71 16 18 H 0.09 0.97 8.04 -51.93 -0.42 0.55 16 19 C 0.08 0.45 6.02 37.15 0.22 0.68 16 20 O -0.56 -3.29 9.75 -35.23 -0.34 -3.63 16 21 C -0.08 -0.92 3.68 -104.62 -0.38 -1.30 16 22 C -0.08 -0.97 8.13 -39.58 -0.32 -1.29 16 23 C -0.13 -1.47 10.05 -39.58 -0.40 -1.87 16 24 C -0.12 -1.34 10.05 -39.58 -0.40 -1.74 16 25 C -0.12 -1.35 10.05 -39.58 -0.40 -1.75 16 26 C -0.11 -1.23 9.68 -39.58 -0.38 -1.62 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.07 0.56 6.25 -51.93 -0.32 0.24 16 29 H 0.10 0.65 4.91 -51.92 -0.26 0.40 16 30 H 0.09 1.10 7.42 -51.93 -0.39 0.71 16 31 H 0.09 1.08 8.11 -51.93 -0.42 0.66 16 32 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 33 H 0.06 1.19 8.10 -51.93 -0.42 0.77 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 36 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 37 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 38 H 0.26 7.76 8.31 -40.82 -0.34 7.43 16 39 H 0.06 0.27 7.52 -51.93 -0.39 -0.12 16 40 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.38 0.58 9.12 45.56 0.42 1.00 16 42 H 0.12 1.45 7.58 -52.49 -0.40 1.05 16 43 H 0.12 1.18 8.06 -52.49 -0.42 0.75 16 44 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 45 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 46 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 370.02 15.07 5.58 5.58 Total: -1.00 -36.66 370.02 -8.41 -45.07 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -6.75 Total: -1.10 kcal Atomic # 6 Polarization: -16.66 SS G_CDS: -2.69 Total: -19.35 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.39 Total: -35.04 kcal Atomic # 8 Polarization: -12.97 SS G_CDS: -0.26 Total: -13.23 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.67 Total: 18.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -36.66 -8.41 -45.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590864416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.990 kcal (2) G-P(sol) polarization free energy of solvation -36.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.068 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds