Wall clock time and date at job start Tue Mar 31 2020 10:25:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34774 * 119.99513 * 2 1 4 4 O 1.21283 * 119.99449 * 180.02562 * 3 2 1 5 5 C 1.50696 * 120.00338 * 0.02562 * 3 2 1 6 6 C 1.53001 * 109.47263 * 180.02562 * 5 3 2 7 7 C 1.53002 * 109.47355 * 179.97438 * 6 5 3 8 8 C 1.52994 * 109.47272 * 179.97438 * 7 6 5 9 9 C 1.50696 * 109.47180 * 180.02562 * 8 7 6 10 10 H 1.07997 * 120.00087 * 359.97438 * 9 8 7 11 11 C 1.37879 * 120.00370 * 180.02562 * 9 8 7 12 12 N 1.31509 * 120.00587 * 179.97438 * 11 9 8 13 13 Si 1.86809 * 119.99547 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.46715 * 90.00548 * 13 11 9 15 15 H 1.48502 * 109.46926 * 209.99943 * 13 11 9 16 16 H 1.48495 * 109.47292 * 330.00375 * 13 11 9 17 17 C 1.46499 * 119.99870 * 180.02562 * 2 1 3 18 18 H 1.08997 * 109.46793 * 236.05225 * 17 2 1 19 19 C 1.52995 * 109.47380 * 356.05565 * 17 2 1 20 20 O 1.42907 * 109.46944 * 67.39448 * 19 17 2 21 21 C 1.50706 * 109.46937 * 116.06198 * 17 2 1 22 22 C 1.38238 * 119.99503 * 323.49813 * 21 17 2 23 23 C 1.38237 * 119.99383 * 179.78928 * 22 21 17 24 24 C 1.38236 * 120.00224 * 0.44946 * 23 22 21 25 25 C 1.38237 * 119.99941 * 359.80027 * 24 23 22 26 26 C 1.38231 * 119.99966 * 359.97438 * 25 24 23 27 27 H 1.08999 * 109.47220 * 264.52601 * 1 2 3 28 28 H 1.08996 * 109.47827 * 24.52806 * 1 2 3 29 29 H 1.09008 * 109.47128 * 144.52938 * 1 2 3 30 30 H 1.09005 * 109.46933 * 299.99911 * 5 3 2 31 31 H 1.08999 * 109.47638 * 59.99733 * 5 3 2 32 32 H 1.09005 * 109.47008 * 299.99785 * 6 5 3 33 33 H 1.09004 * 109.47032 * 60.00043 * 6 5 3 34 34 H 1.09001 * 109.46914 * 300.00452 * 7 6 5 35 35 H 1.09006 * 109.47021 * 59.99648 * 7 6 5 36 36 H 1.09005 * 109.47268 * 300.00134 * 8 7 6 37 37 H 1.09006 * 109.47166 * 60.00005 * 8 7 6 38 38 H 0.96995 * 120.00136 * 179.97438 * 12 11 9 39 39 H 1.08991 * 109.47483 * 307.39476 * 19 17 2 40 40 H 1.09004 * 109.46905 * 187.39096 * 19 17 2 41 41 H 0.96700 * 113.99604 * 179.97438 * 20 19 17 42 42 H 1.07998 * 120.00267 * 0.02562 * 22 21 17 43 43 H 1.07995 * 119.99915 * 180.26829 * 23 22 21 44 44 H 1.07995 * 119.99993 * 179.83609 * 24 23 22 45 45 H 1.07997 * 120.00157 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.00412 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3516 1.1672 -0.0005 5 6 1.3853 2.4723 0.0006 6 6 2.3795 3.6353 -0.0002 7 6 1.6144 4.9603 -0.0002 8 6 2.6086 6.1232 -0.0004 9 6 1.8551 7.4283 0.0002 10 1 0.7751 7.4282 0.0002 11 6 2.5444 8.6224 -0.0003 12 7 1.8868 9.7613 -0.0003 13 14 4.4125 8.6224 -0.0010 14 1 4.9068 8.6222 -1.4014 15 1 4.9077 9.8351 0.6985 16 1 4.9078 7.4101 0.6990 17 6 2.1975 -1.2687 -0.0006 18 1 2.8761 -1.2968 0.8519 19 6 1.2063 -2.4300 0.0981 20 8 0.4303 -2.4970 -1.1000 21 6 2.9893 -1.3911 -1.2770 22 6 2.4667 -0.9105 -2.4632 23 6 3.1948 -1.0188 -3.6332 24 6 4.4415 -1.6160 -3.6188 25 6 4.9618 -2.1011 -2.4336 26 6 4.2357 -1.9887 -1.2627 27 1 -0.3633 -0.0980 1.0230 28 1 -0.3634 0.9349 -0.4266 29 1 -0.3634 -0.8370 -0.5964 30 1 0.7583 2.5302 -0.8892 31 1 0.7589 2.5299 0.8908 32 1 3.0068 3.5776 0.8894 33 1 3.0054 3.5775 -0.8907 34 1 0.9874 5.0177 -0.8899 35 1 0.9881 5.0182 0.8900 36 1 3.2354 6.0656 0.8896 37 1 3.2353 6.0654 -0.8904 38 1 2.3718 10.6013 -0.0003 39 1 0.5456 -2.2723 0.9505 40 1 1.7527 -3.3639 0.2298 41 1 -0.2205 -3.2122 -1.1076 42 1 1.4913 -0.4471 -2.4750 43 1 2.7885 -0.6395 -4.5592 44 1 5.0091 -1.7029 -4.5334 45 1 5.9355 -2.5681 -2.4224 46 1 4.6419 -2.3681 -0.3368 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590864416.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:37 Heat of formation + Delta-G solvation = -89.871948 kcal Electronic energy + Delta-G solvation = -25021.283680 eV Core-core repulsion = 21488.692960 eV Total energy + Delta-G solvation = -3532.590720 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.49034 -39.77306 -38.23004 -36.70077 -36.01282 -34.64772 -33.22413 -31.78756 -31.59125 -29.47971 -27.80133 -27.44505 -24.42594 -23.68203 -23.38176 -21.97150 -21.56723 -19.89957 -18.87654 -18.63463 -18.14635 -17.39146 -17.19699 -16.91100 -16.33524 -16.19323 -15.68983 -15.53210 -15.34009 -14.95054 -14.66631 -14.45694 -14.20912 -13.85681 -13.74615 -13.68179 -13.60277 -13.49385 -13.26410 -12.86005 -12.83326 -12.60782 -12.30552 -12.07989 -11.89496 -11.80207 -11.76489 -11.49674 -11.36239 -11.27578 -11.05413 -10.77031 -10.58105 -9.77884 -9.70747 -9.46801 -8.30648 -6.33611 0.47121 0.56086 1.33802 1.34973 1.48177 1.68099 2.02933 2.35033 2.91819 3.04679 3.30359 3.68305 3.75817 3.97199 4.00116 4.09167 4.11115 4.18125 4.28407 4.36114 4.47498 4.54217 4.59261 4.61207 4.63646 4.69700 4.72959 4.77962 4.82671 4.84716 5.11020 5.12696 5.17052 5.18230 5.19607 5.25797 5.52300 5.58158 5.58334 5.63820 5.64455 5.67414 5.79031 6.15543 6.28622 6.41138 6.74078 6.95215 7.24053 7.31247 8.86016 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018570 B = 0.002922 C = 0.002679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.439103 B = 9581.186504 C =10447.332332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.051 3.949 2 N -0.604 5.604 3 C 0.507 3.493 4 O -0.576 6.576 5 C -0.129 4.129 6 C -0.095 4.095 7 C -0.092 4.092 8 C -0.016 4.016 9 C -0.530 4.530 10 H 0.038 0.962 11 C 0.005 3.995 12 N -0.950 5.950 13 Si 0.946 3.054 14 H -0.267 1.267 15 H -0.280 1.280 16 H -0.254 1.254 17 C 0.181 3.819 18 H 0.086 0.914 19 C 0.085 3.915 20 O -0.572 6.572 21 C -0.086 4.086 22 C -0.095 4.095 23 C -0.141 4.141 24 C -0.134 4.134 25 C -0.132 4.132 26 C -0.126 4.126 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.111 0.889 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.058 0.942 36 H 0.013 0.987 37 H 0.011 0.989 38 H 0.266 0.734 39 H 0.079 0.921 40 H 0.075 0.925 41 H 0.398 0.602 42 H 0.114 0.886 43 H 0.128 0.872 44 H 0.136 0.864 45 H 0.139 0.861 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.863 -34.063 -1.780 34.229 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.337 5.337 3 C 0.296 3.704 4 O -0.456 6.456 5 C -0.168 4.168 6 C -0.133 4.133 7 C -0.130 4.130 8 C -0.053 4.053 9 C -0.568 4.568 10 H 0.056 0.944 11 C -0.192 4.192 12 N -0.591 5.591 13 Si 0.770 3.230 14 H -0.193 1.193 15 H -0.205 1.205 16 H -0.178 1.178 17 C 0.078 3.922 18 H 0.104 0.896 19 C 0.007 3.993 20 O -0.381 6.381 21 C -0.087 4.087 22 C -0.114 4.114 23 C -0.159 4.159 24 C -0.152 4.152 25 C -0.150 4.150 26 C -0.145 4.145 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.129 0.871 30 H 0.127 0.873 31 H 0.131 0.869 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.032 0.968 37 H 0.029 0.971 38 H 0.075 0.925 39 H 0.097 0.903 40 H 0.093 0.907 41 H 0.249 0.751 42 H 0.132 0.868 43 H 0.146 0.854 44 H 0.154 0.846 45 H 0.157 0.843 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.882 -33.396 -1.917 33.504 hybrid contribution 0.433 0.373 0.081 0.577 sum -1.448 -33.023 -1.837 33.106 Atomic orbital electron populations 1.22484 0.77116 1.05861 1.03574 1.47994 1.08346 1.04284 1.73125 1.21140 0.87724 0.86442 0.75051 1.90685 1.15983 1.87989 1.50894 1.21691 0.99080 0.90170 1.05867 1.21264 0.97423 0.93130 1.01488 1.21328 0.97745 0.92608 1.01303 1.19564 0.95966 0.93819 0.95988 1.21533 0.94008 0.91284 1.50002 0.94381 1.25972 1.03833 0.95095 0.94261 1.70051 1.37958 0.98228 1.52864 0.85713 0.79860 0.78250 0.79182 1.19263 1.20529 1.17751 1.20163 0.93197 0.83901 0.94946 0.89572 1.22217 0.93001 0.95858 0.88205 1.86521 1.54662 1.57492 1.39458 1.20055 0.94992 0.98450 0.95222 1.20904 0.99397 0.98709 0.92361 1.21398 0.95699 1.00164 0.98666 1.21401 0.96028 0.98786 0.98960 1.21360 1.00478 1.00486 0.92657 1.21188 0.94161 1.00115 0.99002 0.91226 0.90477 0.87055 0.87334 0.86865 0.93052 0.93452 0.92569 0.92341 0.96822 0.97112 0.92464 0.90264 0.90693 0.75074 0.86783 0.85370 0.84567 0.84342 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.63 9.12 127.77 1.17 1.80 16 2 N -0.60 -12.08 2.20 -826.79 -1.82 -13.90 16 3 C 0.51 14.14 7.15 87.66 0.63 14.77 16 4 O -0.58 -21.23 15.28 -3.04 -0.05 -21.27 16 5 C -0.13 -3.30 4.17 29.85 0.12 -3.18 16 6 C -0.09 -3.30 4.50 30.60 0.14 -3.16 16 7 C -0.09 -3.69 5.15 30.59 0.16 -3.53 16 8 C -0.02 -0.80 4.04 29.84 0.12 -0.68 16 9 C -0.53 -31.80 9.66 25.60 0.25 -31.55 16 10 H 0.04 2.46 7.99 -2.91 -0.02 2.43 16 11 C 0.01 0.31 5.47 84.66 0.46 0.77 16 12 N -0.95 -61.14 13.96 21.45 0.30 -60.84 16 13 Si 0.95 46.77 27.47 68.60 1.88 48.65 16 14 H -0.27 -12.74 7.11 99.48 0.71 -12.04 16 15 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 16 H -0.25 -12.00 6.54 99.48 0.65 -11.35 16 17 C 0.18 3.35 2.68 44.25 0.12 3.46 16 18 H 0.09 1.71 8.04 -2.39 -0.02 1.69 16 19 C 0.09 0.80 6.02 71.98 0.43 1.23 16 20 O -0.57 -5.31 9.75 -148.98 -1.45 -6.76 16 21 C -0.09 -1.97 3.68 -19.86 -0.07 -2.04 16 22 C -0.10 -2.31 8.13 22.27 0.18 -2.13 16 23 C -0.14 -3.26 10.05 22.27 0.22 -3.04 16 24 C -0.13 -2.84 10.05 22.27 0.22 -2.62 16 25 C -0.13 -2.74 10.05 22.27 0.22 -2.52 16 26 C -0.13 -2.77 9.68 22.27 0.22 -2.55 16 27 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.08 0.94 6.25 -2.39 -0.01 0.93 16 29 H 0.11 1.15 4.91 -2.38 -0.01 1.13 16 30 H 0.11 2.40 7.42 -2.38 -0.02 2.38 16 31 H 0.11 2.39 8.11 -2.39 -0.02 2.37 16 32 H 0.05 1.89 8.10 -2.38 -0.02 1.87 16 33 H 0.05 1.78 8.10 -2.38 -0.02 1.76 16 34 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.06 2.26 8.14 -2.38 -0.02 2.24 16 36 H 0.01 0.68 7.20 -2.38 -0.02 0.66 16 37 H 0.01 0.53 7.57 -2.38 -0.02 0.51 16 38 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 39 H 0.08 0.44 7.52 -2.39 -0.02 0.42 16 40 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 41 H 0.40 0.06 9.12 -74.06 -0.68 -0.61 16 42 H 0.11 2.74 7.58 -2.91 -0.02 2.71 16 43 H 0.13 2.52 8.06 -2.91 -0.02 2.49 16 44 H 0.14 2.23 8.06 -2.91 -0.02 2.21 16 45 H 0.14 2.17 8.06 -2.91 -0.02 2.15 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -80.65 370.02 3.68 -76.96 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: 0.23 Total: 12.11 kcal Atomic # 6 Polarization: -39.55 SS G_CDS: 4.59 Total: -34.96 kcal Atomic # 7 Polarization: -73.22 SS G_CDS: -1.52 Total: -74.73 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -1.50 Total: -28.03 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 1.88 Total: 48.65 kcal Total: -80.65 3.68 -76.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590864416.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.910 kcal (2) G-P(sol) polarization free energy of solvation -80.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds