Wall clock time and date at job start Tue Mar 31 2020 09:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47156 * 2 1 4 4 C 1.35899 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38732 * 120.05627 * 179.97438 * 4 3 2 6 6 C 1.38143 * 119.94736 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05272 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94123 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47477 * 89.99941 * 8 7 6 10 10 H 1.08993 * 109.46773 * 305.00162 * 9 8 7 11 11 C 1.53001 * 109.46768 * 64.99662 * 9 8 7 12 12 C 1.50698 * 109.47004 * 184.99476 * 9 8 7 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 9 8 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 9 8 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 9 16 16 H 1.08999 * 109.47480 * 35.27807 * 15 14 12 17 17 C 1.53008 * 109.47014 * 275.27733 * 15 14 12 18 18 C 1.50696 * 109.47278 * 155.27952 * 15 14 12 19 19 H 1.08002 * 120.00157 * 359.97438 * 18 15 14 20 20 C 1.37881 * 120.00447 * 179.97438 * 18 15 14 21 21 N 1.31510 * 119.99635 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00210 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47150 * 60.00100 * 22 20 18 24 24 H 1.48498 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47405 * 300.00440 * 22 20 18 26 26 C 1.38267 * 120.10867 * 0.25341 * 7 6 5 27 27 C 1.38146 * 120.05879 * 359.45232 * 26 7 6 28 28 H 1.09008 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47647 * 300.00344 * 1 2 3 30 30 H 1.09000 * 109.47411 * 60.00534 * 1 2 3 31 31 H 1.09000 * 109.47138 * 239.99715 * 2 1 3 32 32 H 1.09000 * 109.46669 * 119.99514 * 2 1 3 33 33 H 1.08005 * 120.02924 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.97730 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47124 * 329.99078 * 8 7 6 36 36 H 1.09003 * 109.46391 * 209.99928 * 8 7 6 37 37 H 1.09001 * 109.47406 * 60.00127 * 11 9 8 38 38 H 1.09001 * 109.47038 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.47475 * 299.99715 * 11 9 8 40 40 H 0.97001 * 120.00485 * 0.02562 * 14 12 9 41 41 H 1.09000 * 109.47169 * 299.99790 * 17 15 14 42 42 H 1.08995 * 109.47066 * 60.00517 * 17 15 14 43 43 H 1.09005 * 109.46722 * 180.02562 * 17 15 14 44 44 H 0.97000 * 120.00295 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.96816 * 179.70197 * 26 7 6 46 46 H 1.07995 * 120.03049 * 180.24941 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2549 2.9852 0.0001 7 6 6.0962 1.8878 0.0000 8 6 7.5901 2.0853 -0.0005 9 6 8.0963 2.1526 1.4417 10 1 7.5553 2.9302 1.9807 11 6 7.8666 0.8036 2.1262 12 6 9.5690 2.4721 1.4428 13 8 10.1560 2.6309 0.3934 14 7 10.2337 2.5823 2.6101 15 6 11.6667 2.8870 2.6110 16 1 11.8947 3.5644 1.7881 17 6 12.4636 1.5919 2.4413 18 6 12.0407 3.5395 3.9169 19 1 11.2864 3.7105 4.6707 20 6 13.3459 3.9181 4.1496 21 7 14.2646 3.7094 3.2320 22 14 13.8093 4.7275 5.7680 23 1 13.4980 3.8053 6.8897 24 1 15.2619 5.0362 5.7690 25 1 13.0364 5.9848 5.9319 26 6 5.5689 0.6096 -0.0053 27 6 4.1997 0.4259 0.0008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 3.2284 3.6643 -0.0012 34 1 5.6692 3.9825 0.0001 35 1 7.8335 3.0150 -0.5148 36 1 8.0667 1.2504 -0.5143 37 1 8.4075 0.0258 1.5872 38 1 8.2268 0.8516 3.1538 39 1 6.8014 0.5725 2.1254 40 1 9.7643 2.4557 3.4494 41 1 12.2356 0.9146 3.2643 42 1 12.1931 1.1201 1.4968 43 1 13.5298 1.8186 2.4425 44 1 15.1828 3.9761 3.3954 45 1 6.2281 -0.2459 -0.0102 46 1 3.7884 -0.5726 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591037617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:49 Heat of formation + Delta-G solvation = -76.069156 kcal Electronic energy + Delta-G solvation = -24325.801222 eV Core-core repulsion = 20793.809036 eV Total energy + Delta-G solvation = -3531.992186 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.40563 -39.21733 -37.91806 -34.96881 -34.26876 -32.42391 -32.07191 -31.10531 -30.08462 -28.52706 -26.35385 -25.23621 -24.43760 -23.33361 -22.22759 -21.27863 -20.23487 -19.10277 -18.46269 -17.12945 -16.39847 -16.14639 -16.00495 -15.27485 -15.07198 -14.83163 -14.42408 -14.32157 -13.72958 -13.71435 -13.61602 -13.31879 -13.05686 -12.86214 -12.56226 -12.37411 -12.09385 -12.00038 -11.92821 -11.65757 -11.27810 -11.23284 -11.04503 -11.00864 -10.92005 -10.78721 -10.71154 -10.61918 -10.30518 -10.21365 -9.12192 -9.03257 -8.87913 -8.52606 -8.15788 -7.85692 -6.10468 -4.19717 1.22501 1.30717 2.94308 3.26382 3.31621 3.32815 3.46729 3.61819 4.14513 4.40029 4.53084 4.53412 4.70673 4.76469 4.85851 4.96176 5.07691 5.08573 5.17429 5.21633 5.28933 5.35509 5.37257 5.38330 5.57541 5.63779 5.73909 5.82583 5.91533 5.93462 6.05524 6.17099 6.25768 6.30616 6.35490 6.64977 6.67164 6.85104 6.99299 7.18000 7.23177 7.50644 7.59474 7.72141 7.94342 8.17671 8.71878 8.80897 9.18694 9.48048 10.95390 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.002297 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.634902 B =12188.362685 C =12410.425057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.319 6.319 4 C 0.119 3.881 5 C -0.150 4.150 6 C -0.077 4.077 7 C -0.108 4.108 8 C -0.058 4.058 9 C -0.107 4.107 10 H 0.091 0.909 11 C -0.144 4.144 12 C 0.505 3.495 13 O -0.557 6.557 14 N -0.709 5.709 15 C 0.264 3.736 16 H 0.048 0.952 17 C -0.146 4.146 18 C -0.533 4.533 19 H 0.060 0.940 20 C 0.065 3.935 21 N -0.884 5.884 22 Si 0.902 3.098 23 H -0.276 1.276 24 H -0.286 1.286 25 H -0.276 1.276 26 C -0.075 4.075 27 C -0.208 4.208 28 H 0.077 0.923 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.128 0.872 34 H 0.130 0.870 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.058 0.942 38 H 0.060 0.940 39 H 0.063 0.937 40 H 0.388 0.612 41 H 0.025 0.975 42 H 0.014 0.986 43 H 0.089 0.911 44 H 0.265 0.735 45 H 0.125 0.875 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.041 -7.967 -4.849 25.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.234 6.234 4 C 0.074 3.926 5 C -0.169 4.169 6 C -0.095 4.095 7 C -0.108 4.108 8 C -0.095 4.095 9 C -0.129 4.129 10 H 0.109 0.891 11 C -0.201 4.201 12 C 0.289 3.711 13 O -0.436 6.436 14 N -0.356 5.356 15 C 0.162 3.838 16 H 0.065 0.935 17 C -0.205 4.205 18 C -0.572 4.572 19 H 0.078 0.922 20 C -0.138 4.138 21 N -0.521 5.521 22 Si 0.729 3.271 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.093 4.093 27 C -0.226 4.226 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.079 0.921 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.077 0.923 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.220 0.780 41 H 0.044 0.956 42 H 0.033 0.967 43 H 0.108 0.892 44 H 0.075 0.925 45 H 0.143 0.857 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -23.530 -7.677 -5.622 25.381 hybrid contribution 0.161 0.085 1.362 1.374 sum -23.368 -7.592 -4.261 24.937 Atomic orbital electron populations 1.21776 0.92832 1.02810 1.03507 1.22751 0.95776 0.82161 1.01371 1.86051 1.19305 1.29112 1.88900 1.18971 0.82040 0.94241 0.97333 1.20408 0.95207 0.94697 1.06577 1.20940 0.91937 0.99055 0.97538 1.19905 0.96036 0.92904 1.01975 1.20342 0.89483 1.04132 0.95566 1.21288 0.94374 0.99589 0.97603 0.89072 1.21822 1.02006 0.95739 1.00538 1.20401 0.88464 0.77537 0.84666 1.90644 1.69874 1.51562 1.31568 1.46523 1.12748 1.69435 1.06883 1.18720 0.73802 0.93431 0.97853 0.93458 1.22070 1.04348 0.97511 0.96545 1.21188 0.94424 1.40473 1.01104 0.92185 1.24895 0.96212 0.95567 0.97100 1.69892 1.02227 1.46410 1.33574 0.86508 0.77423 0.79788 0.83356 1.20188 1.21149 1.20195 1.20897 0.94044 0.96995 0.97371 1.21197 0.94358 0.97817 1.09274 0.90419 0.91523 0.91554 0.92123 0.92076 0.85413 0.85192 0.90100 0.90470 0.92259 0.92075 0.91786 0.77987 0.95562 0.96696 0.89217 0.92549 0.85697 0.85780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 10.28 37.16 0.38 -0.42 16 2 C 0.05 0.38 5.46 37.16 0.20 0.59 16 3 O -0.32 -3.31 10.14 -19.42 -0.20 -3.51 16 4 C 0.12 1.31 6.69 -39.22 -0.26 1.05 16 5 C -0.15 -1.64 9.99 -39.43 -0.39 -2.04 16 6 C -0.08 -0.85 9.69 -39.60 -0.38 -1.24 16 7 C -0.11 -1.26 4.71 -104.60 -0.49 -1.76 16 8 C -0.06 -0.78 4.19 -27.89 -0.12 -0.89 16 9 C -0.11 -1.53 2.71 -91.77 -0.25 -1.78 16 10 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 11 C -0.14 -1.76 8.67 37.16 0.32 -1.44 16 12 C 0.50 9.97 7.12 -10.99 -0.08 9.89 16 13 O -0.56 -13.25 15.58 5.55 0.09 -13.17 16 14 N -0.71 -14.80 4.96 -54.93 -0.27 -15.07 16 15 C 0.26 6.77 2.56 -69.08 -0.18 6.60 16 16 H 0.05 1.41 7.58 -51.93 -0.39 1.01 16 17 C -0.15 -3.67 9.26 37.16 0.34 -3.33 16 18 C -0.53 -14.23 8.73 -34.44 -0.30 -14.53 16 19 H 0.06 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 21 N -0.88 -25.05 11.32 55.43 0.63 -24.42 16 22 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 23 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 C -0.07 -0.80 7.97 -39.60 -0.32 -1.12 16 27 C -0.21 -2.10 9.04 -39.43 -0.36 -2.45 16 28 H 0.08 0.26 8.14 -51.92 -0.42 -0.16 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 32 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 33 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 34 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 35 H 0.08 1.17 7.90 -51.93 -0.41 0.76 16 36 H 0.08 1.08 8.08 -51.93 -0.42 0.66 16 37 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.06 0.73 7.57 -51.93 -0.39 0.34 16 39 H 0.06 0.69 6.28 -51.93 -0.33 0.36 16 40 H 0.39 7.06 7.96 -40.82 -0.32 6.73 16 41 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 43 H 0.09 2.45 6.07 -51.93 -0.32 2.13 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.13 1.18 8.05 -52.49 -0.42 0.76 16 46 H 0.12 0.99 6.30 -52.49 -0.33 0.66 16 LS Contribution 375.48 15.07 5.66 5.66 Total: -1.00 -31.41 375.48 -8.56 -39.98 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -7.48 Total: 5.99 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.97 Total: -11.18 kcal Atomic # 7 Polarization: -39.84 SS G_CDS: 0.35 Total: -39.49 kcal Atomic # 8 Polarization: -16.56 SS G_CDS: -0.11 Total: -16.67 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.41 -8.56 -39.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591037617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.092 kcal (2) G-P(sol) polarization free energy of solvation -31.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.565 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds