Wall clock time and date at job start Tue Mar 31 2020 09:17:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42895 * 109.47156 * 2 1 4 4 C 1.35899 * 117.00106 * 179.97438 * 3 2 1 5 5 C 1.38732 * 120.05627 * 179.97438 * 4 3 2 6 6 C 1.38143 * 119.94736 * 180.02562 * 5 4 3 7 7 C 1.38274 * 120.05272 * 0.02562 * 6 5 4 8 8 C 1.50696 * 119.94123 * 179.97438 * 7 6 5 9 9 C 1.52999 * 109.47477 * 89.99941 * 8 7 6 10 10 H 1.08993 * 109.46773 * 305.00162 * 9 8 7 11 11 C 1.53001 * 109.46768 * 64.99662 * 9 8 7 12 12 C 1.50698 * 109.47004 * 184.99476 * 9 8 7 13 13 O 1.21283 * 120.00472 * 0.02562 * 12 9 8 14 14 N 1.34777 * 119.99538 * 179.97438 * 12 9 8 15 15 C 1.46499 * 119.99665 * 179.72653 * 14 12 9 16 16 H 1.08999 * 109.47480 * 35.27807 * 15 14 12 17 17 C 1.53008 * 109.47014 * 275.27733 * 15 14 12 18 18 C 1.50696 * 109.47278 * 155.27952 * 15 14 12 19 19 H 1.08002 * 120.00157 * 359.97438 * 18 15 14 20 20 C 1.37881 * 120.00447 * 179.97438 * 18 15 14 21 21 N 1.31510 * 119.99635 * 359.97438 * 20 18 15 22 22 Si 1.86792 * 120.00210 * 179.97438 * 20 18 15 23 23 H 1.48508 * 109.47150 * 60.00100 * 22 20 18 24 24 H 1.48498 * 109.47193 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47405 * 300.00440 * 22 20 18 26 26 C 1.38267 * 120.10867 * 0.25341 * 7 6 5 27 27 C 1.38146 * 120.05879 * 359.45232 * 26 7 6 28 28 H 1.09008 * 109.47475 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47647 * 300.00344 * 1 2 3 30 30 H 1.09000 * 109.47411 * 60.00534 * 1 2 3 31 31 H 1.09000 * 109.47138 * 239.99715 * 2 1 3 32 32 H 1.09000 * 109.46669 * 119.99514 * 2 1 3 33 33 H 1.08005 * 120.02924 * 359.97438 * 5 4 3 34 34 H 1.07997 * 119.97730 * 180.02562 * 6 5 4 35 35 H 1.09000 * 109.47124 * 329.99078 * 8 7 6 36 36 H 1.09003 * 109.46391 * 209.99928 * 8 7 6 37 37 H 1.09001 * 109.47406 * 60.00127 * 11 9 8 38 38 H 1.09001 * 109.47038 * 180.02562 * 11 9 8 39 39 H 1.08995 * 109.47475 * 299.99715 * 11 9 8 40 40 H 0.97001 * 120.00485 * 0.02562 * 14 12 9 41 41 H 1.09000 * 109.47169 * 299.99790 * 17 15 14 42 42 H 1.08995 * 109.47066 * 60.00517 * 17 15 14 43 43 H 1.09005 * 109.46722 * 180.02562 * 17 15 14 44 44 H 0.97000 * 120.00295 * 179.97438 * 21 20 18 45 45 H 1.08000 * 119.96816 * 179.70197 * 26 7 6 46 46 H 1.07995 * 120.03049 * 180.24941 * 27 26 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3536 1.5253 0.0005 5 6 3.8851 2.8068 0.0000 6 6 5.2549 2.9852 0.0001 7 6 6.0962 1.8878 0.0000 8 6 7.5901 2.0853 -0.0005 9 6 8.0963 2.1526 1.4417 10 1 7.5553 2.9302 1.9807 11 6 7.8666 0.8036 2.1262 12 6 9.5690 2.4721 1.4428 13 8 10.1560 2.6309 0.3934 14 7 10.2337 2.5823 2.6101 15 6 11.6667 2.8870 2.6110 16 1 11.8947 3.5644 1.7881 17 6 12.4636 1.5919 2.4413 18 6 12.0407 3.5395 3.9169 19 1 11.2864 3.7105 4.6707 20 6 13.3459 3.9181 4.1496 21 7 14.2646 3.7094 3.2320 22 14 13.8093 4.7275 5.7680 23 1 13.4980 3.8053 6.8897 24 1 15.2619 5.0362 5.7690 25 1 13.0364 5.9848 5.9319 26 6 5.5689 0.6096 -0.0053 27 6 4.1997 0.4259 0.0008 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 3.2284 3.6643 -0.0012 34 1 5.6692 3.9825 0.0001 35 1 7.8335 3.0150 -0.5148 36 1 8.0667 1.2504 -0.5143 37 1 8.4075 0.0258 1.5872 38 1 8.2268 0.8516 3.1538 39 1 6.8014 0.5725 2.1254 40 1 9.7643 2.4557 3.4494 41 1 12.2356 0.9146 3.2643 42 1 12.1931 1.1201 1.4968 43 1 13.5298 1.8186 2.4425 44 1 15.1828 3.9761 3.3954 45 1 6.2281 -0.2459 -0.0102 46 1 3.7884 -0.5726 0.0007 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591037617.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:48 Heat of formation + Delta-G solvation = -94.138495 kcal Electronic energy + Delta-G solvation = -24326.584767 eV Core-core repulsion = 20793.809036 eV Total energy + Delta-G solvation = -3532.775731 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.26473 -40.66634 -38.83655 -36.77118 -35.53663 -34.27519 -32.76815 -31.90457 -31.27374 -30.14217 -27.35576 -27.29794 -25.20918 -24.54047 -23.02474 -22.59691 -21.58058 -20.71371 -19.18503 -18.81236 -17.63212 -17.17083 -16.99781 -16.93333 -16.20156 -16.10580 -16.01859 -15.28904 -15.01552 -14.58538 -14.46080 -14.38067 -14.27506 -14.20818 -13.81131 -13.50005 -13.34115 -13.03027 -12.99808 -12.84375 -12.80071 -12.72610 -12.55918 -12.26059 -12.23372 -12.15541 -12.08547 -11.93575 -11.58886 -11.48790 -11.10437 -10.64539 -10.49082 -9.90498 -9.71128 -8.99704 -8.16719 -6.34410 0.42290 0.46237 1.45034 1.47214 1.55026 1.87348 2.30214 2.36322 2.63158 2.85720 3.13213 3.79519 3.83933 3.97899 3.98986 4.06198 4.08224 4.21443 4.26225 4.38792 4.43649 4.49591 4.55155 4.63508 4.76799 4.84773 4.90495 4.91718 4.94068 4.96089 4.98824 5.10813 5.15334 5.21287 5.25782 5.31144 5.36965 5.43904 5.45857 5.63060 5.70873 5.76569 5.86355 5.92657 6.11467 6.50672 6.73591 7.00754 7.33357 7.60053 8.89227 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.031969 B = 0.002297 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 875.634902 B =12188.362685 C =12410.425057 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.045 3.955 3 O -0.334 6.334 4 C 0.113 3.887 5 C -0.161 4.161 6 C -0.082 4.082 7 C -0.118 4.118 8 C -0.050 4.050 9 C -0.093 4.093 10 H 0.109 0.891 11 C -0.138 4.138 12 C 0.500 3.500 13 O -0.602 6.602 14 N -0.705 5.705 15 C 0.269 3.731 16 H -0.004 1.004 17 C -0.132 4.132 18 C -0.547 4.547 19 H 0.073 0.927 20 C 0.013 3.987 21 N -0.917 5.917 22 Si 0.973 3.027 23 H -0.263 1.263 24 H -0.287 1.287 25 H -0.271 1.271 26 C -0.076 4.076 27 C -0.206 4.206 28 H 0.099 0.901 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.070 0.930 32 H 0.071 0.929 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.063 0.937 36 H 0.068 0.932 37 H 0.054 0.946 38 H 0.066 0.934 39 H 0.086 0.914 40 H 0.404 0.596 41 H 0.040 0.960 42 H 0.011 0.989 43 H 0.065 0.935 44 H 0.265 0.735 45 H 0.138 0.862 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.255 -8.973 -3.250 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.030 4.030 3 O -0.249 6.249 4 C 0.068 3.932 5 C -0.179 4.179 6 C -0.100 4.100 7 C -0.118 4.118 8 C -0.088 4.088 9 C -0.115 4.115 10 H 0.127 0.873 11 C -0.195 4.195 12 C 0.288 3.712 13 O -0.484 6.484 14 N -0.353 5.353 15 C 0.165 3.835 16 H 0.014 0.986 17 C -0.191 4.191 18 C -0.585 4.585 19 H 0.091 0.909 20 C -0.187 4.187 21 N -0.556 5.556 22 Si 0.798 3.202 23 H -0.188 1.188 24 H -0.212 1.212 25 H -0.196 1.196 26 C -0.094 4.094 27 C -0.225 4.225 28 H 0.117 0.883 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.154 0.846 34 H 0.154 0.846 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.105 0.895 40 H 0.239 0.761 41 H 0.059 0.941 42 H 0.030 0.970 43 H 0.084 0.916 44 H 0.074 0.926 45 H 0.156 0.844 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -25.793 -8.701 -4.004 27.514 hybrid contribution 0.776 0.380 0.781 1.165 sum -25.016 -8.321 -3.223 26.560 Atomic orbital electron populations 1.21807 0.91648 1.04115 1.03119 1.23043 0.96792 0.80877 1.02247 1.86047 1.18914 1.31211 1.88729 1.19163 0.82627 0.94517 0.96930 1.20570 0.95234 0.95374 1.06753 1.21036 0.92143 0.99299 0.97477 1.19726 0.94590 0.93764 1.03714 1.20202 0.90995 1.02926 0.94650 1.21259 0.89807 1.01492 0.98894 0.87300 1.21815 1.03455 0.93900 1.00376 1.21387 0.90594 0.75870 0.83362 1.90623 1.71455 1.53249 1.33114 1.46295 1.11116 1.69617 1.08297 1.18326 0.76613 0.92596 0.95918 0.98605 1.21883 1.02772 0.97544 0.96893 1.21519 0.94979 1.40555 1.01459 0.90911 1.25825 0.96195 0.96063 1.00665 1.70049 1.02542 1.47328 1.35643 0.85383 0.76863 0.78917 0.79071 1.18816 1.21216 1.19618 1.21051 0.94610 0.96869 0.96835 1.21416 0.93945 0.98708 1.08424 0.88265 0.91916 0.91938 0.91219 0.91121 0.84597 0.84648 0.91835 0.91326 0.92661 0.91470 0.89547 0.76111 0.94086 0.96966 0.91596 0.92572 0.84427 0.83560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 71.98 0.74 -0.52 16 2 C 0.04 0.53 5.46 71.98 0.39 0.92 16 3 O -0.33 -6.34 10.14 -92.42 -0.94 -7.28 16 4 C 0.11 2.27 6.69 22.51 0.15 2.42 16 5 C -0.16 -3.30 9.99 22.37 0.22 -3.08 16 6 C -0.08 -1.73 9.69 22.26 0.22 -1.51 16 7 C -0.12 -2.60 4.71 -19.85 -0.09 -2.69 16 8 C -0.05 -1.33 4.19 29.85 0.12 -1.20 16 9 C -0.09 -2.57 2.71 -11.54 -0.03 -2.60 16 10 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 11 C -0.14 -3.07 8.67 71.98 0.62 -2.44 16 12 C 0.50 19.93 7.12 87.66 0.62 20.55 16 13 O -0.60 -29.71 15.58 -3.04 -0.05 -29.76 16 14 N -0.70 -29.41 4.96 -446.09 -2.21 -31.63 16 15 C 0.27 14.14 2.56 44.25 0.11 14.26 16 16 H 0.00 -0.25 7.58 -2.39 -0.02 -0.26 16 17 C -0.13 -6.78 9.26 71.98 0.67 -6.11 16 18 C -0.55 -29.16 8.73 25.60 0.22 -28.94 16 19 H 0.07 3.61 7.74 -2.91 -0.02 3.58 16 20 C 0.01 0.68 5.30 84.66 0.45 1.13 16 21 N -0.92 -53.06 11.32 21.45 0.24 -52.82 16 22 Si 0.97 42.16 29.54 68.60 2.03 44.18 16 23 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 24 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 25 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 26 C -0.08 -1.45 7.97 22.25 0.18 -1.27 16 27 C -0.21 -3.65 9.04 22.37 0.20 -3.45 16 28 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 29 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.69 7.66 -2.39 -0.02 0.67 16 32 H 0.07 0.70 7.66 -2.39 -0.02 0.68 16 33 H 0.14 2.46 8.06 -2.91 -0.02 2.44 16 34 H 0.14 2.61 8.06 -2.91 -0.02 2.58 16 35 H 0.06 1.89 7.90 -2.39 -0.02 1.87 16 36 H 0.07 1.92 8.08 -2.39 -0.02 1.90 16 37 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.07 1.42 7.57 -2.39 -0.02 1.40 16 39 H 0.09 1.57 6.28 -2.39 -0.02 1.56 16 40 H 0.40 14.18 7.96 -92.71 -0.74 13.44 16 41 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 43 H 0.07 3.70 6.07 -2.38 -0.01 3.69 16 44 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.14 2.24 8.05 -2.91 -0.02 2.22 16 46 H 0.15 1.86 6.30 -2.91 -0.02 1.84 16 Total: -1.00 -69.17 375.48 4.10 -65.08 By element: Atomic # 1 Polarization: 26.53 SS G_CDS: 0.22 Total: 26.76 kcal Atomic # 6 Polarization: -19.34 SS G_CDS: 4.80 Total: -14.54 kcal Atomic # 7 Polarization: -82.48 SS G_CDS: -1.97 Total: -84.45 kcal Atomic # 8 Polarization: -36.05 SS G_CDS: -0.98 Total: -37.03 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.18 kcal Total: -69.17 4.10 -65.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591037617.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.062 kcal (2) G-P(sol) polarization free energy of solvation -69.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds