Wall clock time and date at job start Tue Mar 31 2020 09:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47200 * 2 1 4 4 C 1.35903 * 116.99983 * 179.97438 * 3 2 1 5 5 C 1.38728 * 120.05503 * 180.02562 * 4 3 2 6 6 C 1.38148 * 119.94700 * 180.30132 * 5 4 3 7 7 C 1.38275 * 120.05088 * 359.45987 * 6 5 4 8 8 C 1.50695 * 119.94399 * 180.25706 * 7 6 5 9 9 C 1.52997 * 109.47264 * 270.25884 * 8 7 6 10 10 H 1.08994 * 109.47563 * 54.99990 * 9 8 7 11 11 C 1.52999 * 109.46987 * 294.99911 * 9 8 7 12 12 C 1.50705 * 109.46900 * 175.00168 * 9 8 7 13 13 O 1.21283 * 120.00194 * 11.26978 * 12 9 8 14 14 N 1.34781 * 119.99633 * 191.26895 * 12 9 8 15 15 C 1.37096 * 119.99847 * 5.88952 * 14 12 9 16 16 H 1.07995 * 120.00217 * 351.51405 * 15 14 12 17 17 C 1.38957 * 119.99793 * 171.52086 * 15 14 12 18 18 N 1.31409 * 119.99904 * 1.29892 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 181.30671 * 17 15 14 20 20 H 1.48502 * 109.47121 * 89.99607 * 19 17 15 21 21 H 1.48501 * 109.47007 * 209.99565 * 19 17 15 22 22 H 1.48495 * 109.47279 * 329.99469 * 19 17 15 23 23 C 1.46496 * 119.99714 * 185.88716 * 14 12 9 24 24 C 1.52999 * 109.46892 * 262.79798 * 23 14 12 25 25 C 1.38272 * 120.10956 * 0.51751 * 7 6 5 26 26 C 1.38142 * 120.05512 * 359.76374 * 25 7 6 27 27 H 1.09000 * 109.46866 * 60.00216 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46878 * 300.00104 * 1 2 3 30 30 H 1.09004 * 109.47172 * 239.99595 * 2 1 3 31 31 H 1.09005 * 109.47185 * 120.00130 * 2 1 3 32 32 H 1.08005 * 120.03242 * 0.02562 * 5 4 3 33 33 H 1.07991 * 119.97486 * 179.69992 * 6 5 4 34 34 H 1.09001 * 109.46853 * 30.26227 * 8 7 6 35 35 H 1.09000 * 109.46686 * 150.25629 * 8 7 6 36 36 H 1.09007 * 109.47634 * 295.84056 * 11 9 8 37 37 H 1.09000 * 109.46965 * 55.83995 * 11 9 8 38 38 H 1.09000 * 109.47282 * 175.84469 * 11 9 8 39 39 H 0.97002 * 119.99875 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47094 * 22.79950 * 23 14 12 41 41 H 1.09005 * 109.47169 * 142.80338 * 23 14 12 42 42 H 1.08998 * 109.47376 * 299.99980 * 24 23 14 43 43 H 1.08999 * 109.47435 * 60.00335 * 24 23 14 44 44 H 1.09003 * 109.47192 * 180.02562 * 24 23 14 45 45 H 1.07998 * 119.96819 * 179.74581 * 25 7 6 46 46 H 1.08005 * 120.02581 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2551 2.9851 -0.0046 7 6 6.0963 1.8877 0.0003 8 6 7.5902 2.0851 -0.0001 9 6 8.0954 2.1522 -1.4427 10 1 7.5542 2.9298 -1.9815 11 6 7.8653 0.8032 -2.1269 12 6 9.5682 2.4717 -1.4448 13 8 10.1995 2.4291 -0.4101 14 7 10.1838 2.8048 -2.5966 15 6 9.4501 2.9710 -3.7428 16 1 8.4040 2.7035 -3.7578 17 6 10.0527 3.4835 -4.8852 18 7 11.3317 3.7850 -4.8745 19 14 9.0446 3.7442 -6.4360 20 1 8.4677 5.1126 -6.4273 21 1 9.9172 3.5824 -7.6266 22 1 7.9474 2.7448 -6.4870 23 6 11.6369 2.9893 -2.6237 24 6 11.9642 4.4787 -2.4996 25 6 5.5690 0.6095 0.0003 26 6 4.1998 0.4259 0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2286 3.6642 0.0015 33 1 5.6693 3.9824 -0.0091 34 1 7.8340 3.0149 0.5139 35 1 8.0671 1.2503 0.5135 36 1 8.4647 0.0383 -1.6331 37 1 6.8103 0.5373 -2.0601 38 1 8.1569 0.8728 -3.1748 39 1 11.7523 4.1431 -5.6719 40 1 12.0874 2.4478 -1.7920 41 1 12.0342 2.6072 -3.5641 42 1 11.5136 5.0203 -3.3313 43 1 11.5669 4.8610 -1.5594 44 1 13.0453 4.6161 -2.5203 45 1 6.2281 -0.2460 0.0000 46 1 3.7884 -0.5728 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591155191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:38 Heat of formation + Delta-G solvation = -46.550091 kcal Electronic energy + Delta-G solvation = -25200.003710 eV Core-core repulsion = 21669.291567 eV Total energy + Delta-G solvation = -3530.712143 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.19019 -38.92341 -37.71864 -35.23059 -33.95241 -32.01021 -31.41301 -30.88986 -30.13951 -28.90778 -26.00233 -24.85515 -24.24143 -23.14451 -22.03827 -21.36790 -20.14307 -18.89035 -18.27180 -16.77377 -16.29206 -16.24079 -15.91517 -15.02764 -14.60306 -14.32735 -14.15888 -13.99952 -13.55733 -13.49531 -13.39971 -13.07190 -12.95603 -12.72665 -12.47460 -12.15794 -11.90845 -11.80524 -11.59991 -11.34302 -11.30289 -11.04925 -10.97346 -10.83676 -10.70526 -10.64143 -10.47507 -10.27826 -10.21663 -9.99597 -9.83061 -8.88971 -8.78736 -8.25089 -7.90845 -7.71045 -6.19261 -3.86969 1.44652 1.54293 3.10291 3.11260 3.19889 3.21398 3.85585 3.95352 4.07446 4.66227 4.68659 4.81400 4.89465 4.96215 5.00372 5.10315 5.23247 5.28977 5.46956 5.50288 5.52146 5.62985 5.72566 5.79254 5.80075 5.93849 6.08943 6.25418 6.32036 6.37448 6.44185 6.47654 6.53683 6.72400 6.78264 6.81476 6.89061 6.92159 6.96987 7.02337 7.16152 7.36052 7.42726 7.60350 7.85519 7.93857 8.51352 9.10014 9.60391 9.99156 10.65419 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.003368 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.049855 B = 8311.604213 C = 9265.035864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.115 3.885 5 C -0.150 4.150 6 C -0.078 4.078 7 C -0.101 4.101 8 C -0.056 4.056 9 C -0.086 4.086 10 H 0.085 0.915 11 C -0.142 4.142 12 C 0.456 3.544 13 O -0.613 6.613 14 N -0.442 5.442 15 C -0.320 4.320 16 H 0.102 0.898 17 C 0.027 3.973 18 N -0.869 5.869 19 Si 0.924 3.076 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.271 1.271 23 C 0.131 3.869 24 C -0.134 4.134 25 C -0.076 4.076 26 C -0.208 4.208 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.065 0.935 30 H 0.061 0.939 31 H 0.060 0.940 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.053 0.947 38 H 0.071 0.929 39 H 0.264 0.736 40 H 0.031 0.969 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.015 0.985 44 H 0.029 0.971 45 H 0.124 0.876 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.531 -5.918 5.427 17.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.021 4.021 3 O -0.235 6.235 4 C 0.070 3.930 5 C -0.169 4.169 6 C -0.096 4.096 7 C -0.102 4.102 8 C -0.094 4.094 9 C -0.107 4.107 10 H 0.103 0.897 11 C -0.200 4.200 12 C 0.244 3.756 13 O -0.501 6.501 14 N -0.159 5.159 15 C -0.448 4.448 16 H 0.120 0.880 17 C -0.176 4.176 18 N -0.510 5.510 19 Si 0.751 3.249 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.195 1.195 23 C 0.009 3.991 24 C -0.192 4.192 25 C -0.094 4.094 26 C -0.227 4.227 27 H 0.084 0.916 28 H 0.095 0.905 29 H 0.084 0.916 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.091 0.909 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.072 0.928 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.050 0.950 41 H 0.127 0.873 42 H 0.105 0.895 43 H 0.034 0.966 44 H 0.048 0.952 45 H 0.142 0.858 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -15.207 -5.721 5.736 17.230 hybrid contribution -0.363 -0.014 -0.970 1.035 sum -15.570 -5.735 4.766 17.263 Atomic orbital electron populations 1.21771 0.92961 1.02700 1.03443 1.22729 0.95648 0.82344 1.01330 1.86038 1.19431 1.28920 1.89079 1.18935 0.81897 0.94258 0.97890 1.20381 0.95184 0.94592 1.06723 1.20939 0.91890 0.99114 0.97613 1.20004 0.96446 0.92791 1.00913 1.20355 0.88938 1.03376 0.96736 1.20938 0.95023 0.99185 0.95603 0.89668 1.21812 1.00642 0.95673 1.01870 1.19987 0.88859 0.83195 0.83539 1.90506 1.67356 1.60210 1.31991 1.43859 1.06759 1.58162 1.07163 1.19835 0.95192 1.41103 0.88634 0.88013 1.25259 0.96129 0.96641 0.99523 1.70221 1.09601 1.42594 1.28537 0.85963 0.79240 0.78863 0.80864 1.20389 1.20860 1.19546 1.21479 0.80383 0.96151 1.01113 1.22117 0.98460 0.98520 1.00115 1.20889 0.93949 0.97074 0.97462 1.21168 0.94380 0.97674 1.09439 0.91554 0.90514 0.91614 0.92120 0.92213 0.85565 0.85266 0.90881 0.90798 0.93258 0.92778 0.90980 0.92444 0.95040 0.87269 0.89483 0.96607 0.95165 0.85764 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 10.28 37.16 0.38 -0.63 16 2 C 0.05 0.48 5.46 37.16 0.20 0.68 16 3 O -0.32 -3.93 10.14 -19.44 -0.20 -4.12 16 4 C 0.11 1.52 6.69 -39.22 -0.26 1.26 16 5 C -0.15 -2.01 9.99 -39.43 -0.39 -2.40 16 6 C -0.08 -1.09 9.70 -39.60 -0.38 -1.47 16 7 C -0.10 -1.51 4.72 -104.60 -0.49 -2.00 16 8 C -0.06 -0.97 4.14 -27.89 -0.12 -1.09 16 9 C -0.09 -1.68 1.86 -91.77 -0.17 -1.86 16 10 H 0.09 1.68 7.16 -51.93 -0.37 1.31 16 11 C -0.14 -2.52 8.59 37.16 0.32 -2.20 16 12 C 0.46 11.04 6.88 -10.98 -0.08 10.96 16 13 O -0.61 -16.36 15.58 5.56 0.09 -16.27 16 14 N -0.44 -11.18 2.64 -114.81 -0.30 -11.48 16 15 C -0.32 -7.89 8.48 -14.93 -0.13 -8.02 16 16 H 0.10 2.37 5.09 -52.49 -0.27 2.10 16 17 C 0.03 0.65 5.25 -17.47 -0.09 0.56 16 18 N -0.87 -21.72 7.18 55.50 0.40 -21.32 16 19 Si 0.92 19.19 29.55 -169.99 -5.02 14.17 16 20 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 21 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 22 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 23 C 0.13 3.31 5.46 -4.04 -0.02 3.29 16 24 C -0.13 -3.22 9.46 37.16 0.35 -2.87 16 25 C -0.08 -1.02 7.87 -39.60 -0.31 -1.34 16 26 C -0.21 -2.60 9.04 -39.43 -0.36 -2.96 16 27 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.49 7.66 -51.93 -0.40 0.10 16 31 H 0.06 0.47 7.66 -51.93 -0.40 0.07 16 32 H 0.13 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 34 H 0.07 1.31 8.06 -51.93 -0.42 0.89 16 35 H 0.07 1.30 8.06 -51.93 -0.42 0.88 16 36 H 0.05 0.86 8.14 -51.92 -0.42 0.44 16 37 H 0.05 0.84 5.98 -51.93 -0.31 0.53 16 38 H 0.07 1.37 6.31 -51.93 -0.33 1.04 16 39 H 0.26 6.31 8.31 -40.82 -0.34 5.98 16 40 H 0.03 0.80 7.30 -51.93 -0.38 0.42 16 41 H 0.11 2.85 5.90 -51.93 -0.31 2.54 16 42 H 0.09 2.22 5.86 -51.93 -0.30 1.91 16 43 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.12 1.54 8.00 -52.49 -0.42 1.12 16 46 H 0.12 1.24 6.30 -52.48 -0.33 0.91 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -28.67 362.86 -8.29 -36.96 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -7.17 Total: 6.68 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: -1.55 Total: -10.08 kcal Atomic # 7 Polarization: -32.89 SS G_CDS: 0.10 Total: -32.80 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: -0.11 Total: -20.40 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -28.67 -8.29 -36.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591155191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.593 kcal (2) G-P(sol) polarization free energy of solvation -28.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds