Wall clock time and date at job start Tue Mar 31 2020 09:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42895 * 109.47200 * 2 1 4 4 C 1.35903 * 116.99983 * 179.97438 * 3 2 1 5 5 C 1.38728 * 120.05503 * 180.02562 * 4 3 2 6 6 C 1.38148 * 119.94700 * 180.30132 * 5 4 3 7 7 C 1.38275 * 120.05088 * 359.45987 * 6 5 4 8 8 C 1.50695 * 119.94399 * 180.25706 * 7 6 5 9 9 C 1.52997 * 109.47264 * 270.25884 * 8 7 6 10 10 H 1.08994 * 109.47563 * 54.99990 * 9 8 7 11 11 C 1.52999 * 109.46987 * 294.99911 * 9 8 7 12 12 C 1.50705 * 109.46900 * 175.00168 * 9 8 7 13 13 O 1.21283 * 120.00194 * 11.26978 * 12 9 8 14 14 N 1.34781 * 119.99633 * 191.26895 * 12 9 8 15 15 C 1.37096 * 119.99847 * 5.88952 * 14 12 9 16 16 H 1.07995 * 120.00217 * 351.51405 * 15 14 12 17 17 C 1.38957 * 119.99793 * 171.52086 * 15 14 12 18 18 N 1.31409 * 119.99904 * 1.29892 * 17 15 14 19 19 Si 1.86798 * 119.99929 * 181.30671 * 17 15 14 20 20 H 1.48502 * 109.47121 * 89.99607 * 19 17 15 21 21 H 1.48501 * 109.47007 * 209.99565 * 19 17 15 22 22 H 1.48495 * 109.47279 * 329.99469 * 19 17 15 23 23 C 1.46496 * 119.99714 * 185.88716 * 14 12 9 24 24 C 1.52999 * 109.46892 * 262.79798 * 23 14 12 25 25 C 1.38272 * 120.10956 * 0.51751 * 7 6 5 26 26 C 1.38142 * 120.05512 * 359.76374 * 25 7 6 27 27 H 1.09000 * 109.46866 * 60.00216 * 1 2 3 28 28 H 1.09002 * 109.46863 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46878 * 300.00104 * 1 2 3 30 30 H 1.09004 * 109.47172 * 239.99595 * 2 1 3 31 31 H 1.09005 * 109.47185 * 120.00130 * 2 1 3 32 32 H 1.08005 * 120.03242 * 0.02562 * 5 4 3 33 33 H 1.07991 * 119.97486 * 179.69992 * 6 5 4 34 34 H 1.09001 * 109.46853 * 30.26227 * 8 7 6 35 35 H 1.09000 * 109.46686 * 150.25629 * 8 7 6 36 36 H 1.09007 * 109.47634 * 295.84056 * 11 9 8 37 37 H 1.09000 * 109.46965 * 55.83995 * 11 9 8 38 38 H 1.09000 * 109.47282 * 175.84469 * 11 9 8 39 39 H 0.97002 * 119.99875 * 180.02562 * 18 17 15 40 40 H 1.08998 * 109.47094 * 22.79950 * 23 14 12 41 41 H 1.09005 * 109.47169 * 142.80338 * 23 14 12 42 42 H 1.08998 * 109.47376 * 299.99980 * 24 23 14 43 43 H 1.08999 * 109.47435 * 60.00335 * 24 23 14 44 44 H 1.09003 * 109.47192 * 180.02562 * 24 23 14 45 45 H 1.07998 * 119.96819 * 179.74581 * 25 7 6 46 46 H 1.08005 * 120.02581 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3537 1.5253 0.0005 5 6 3.8852 2.8067 0.0011 6 6 5.2551 2.9851 -0.0046 7 6 6.0963 1.8877 0.0003 8 6 7.5902 2.0851 -0.0001 9 6 8.0954 2.1522 -1.4427 10 1 7.5542 2.9298 -1.9815 11 6 7.8653 0.8032 -2.1269 12 6 9.5682 2.4717 -1.4448 13 8 10.1995 2.4291 -0.4101 14 7 10.1838 2.8048 -2.5966 15 6 9.4501 2.9710 -3.7428 16 1 8.4040 2.7035 -3.7578 17 6 10.0527 3.4835 -4.8852 18 7 11.3317 3.7850 -4.8745 19 14 9.0446 3.7442 -6.4360 20 1 8.4677 5.1126 -6.4273 21 1 9.9172 3.5824 -7.6266 22 1 7.9474 2.7448 -6.4870 23 6 11.6369 2.9893 -2.6237 24 6 11.9642 4.4787 -2.4996 25 6 5.5690 0.6095 0.0003 26 6 4.1998 0.4259 0.0001 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.2286 3.6642 0.0015 33 1 5.6693 3.9824 -0.0091 34 1 7.8340 3.0149 0.5139 35 1 8.0671 1.2503 0.5135 36 1 8.4647 0.0383 -1.6331 37 1 6.8103 0.5373 -2.0601 38 1 8.1569 0.8728 -3.1748 39 1 11.7523 4.1431 -5.6719 40 1 12.0874 2.4478 -1.7920 41 1 12.0342 2.6072 -3.5641 42 1 11.5136 5.0203 -3.3313 43 1 11.5669 4.8610 -1.5594 44 1 13.0453 4.6161 -2.5203 45 1 6.2281 -0.2460 0.0000 46 1 3.7884 -0.5728 -0.0003 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000591155191.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:36 Heat of formation + Delta-G solvation = -59.808302 kcal Electronic energy + Delta-G solvation = -25200.578629 eV Core-core repulsion = 21669.291567 eV Total energy + Delta-G solvation = -3531.287062 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -41.23650 -40.62605 -38.83533 -37.10286 -35.43770 -33.35680 -32.78629 -31.93292 -31.67670 -30.36710 -27.30486 -26.74567 -25.23479 -24.64638 -23.09536 -22.72380 -21.55090 -20.70371 -19.17686 -18.58301 -18.07718 -16.99261 -16.90822 -16.39457 -16.25870 -15.93626 -15.70718 -15.28459 -14.96925 -14.65840 -14.51001 -14.38288 -14.24218 -14.13809 -13.75803 -13.34546 -13.25431 -13.13626 -12.92826 -12.81279 -12.72097 -12.53960 -12.49858 -12.28345 -12.18478 -11.96843 -11.88928 -11.78476 -11.75194 -11.54578 -11.45646 -10.74923 -10.16652 -9.88456 -9.67498 -8.97380 -8.07488 -5.81183 0.43169 0.48178 1.45231 1.50861 1.60699 2.08351 2.30659 2.32382 2.78448 3.08779 3.21781 3.85906 3.94291 4.00971 4.08849 4.12170 4.18526 4.27333 4.37295 4.40209 4.47686 4.51125 4.56470 4.66311 4.78120 4.86994 4.90548 4.92895 4.96696 4.99806 5.03010 5.05144 5.15613 5.18684 5.22470 5.33617 5.34036 5.38240 5.45666 5.49682 5.63508 5.80264 5.86497 5.88412 5.95184 6.51575 6.57589 7.18721 7.68044 8.07253 8.78453 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.018048 B = 0.003368 C = 0.003021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.049855 B = 8311.604213 C = 9265.035864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.044 3.956 3 O -0.333 6.333 4 C 0.113 3.887 5 C -0.159 4.159 6 C -0.084 4.084 7 C -0.117 4.117 8 C -0.044 4.044 9 C -0.078 4.078 10 H 0.083 0.917 11 C -0.132 4.132 12 C 0.442 3.558 13 O -0.645 6.645 14 N -0.453 5.453 15 C -0.339 4.339 16 H 0.114 0.886 17 C -0.012 4.012 18 N -0.889 5.889 19 Si 0.990 3.010 20 H -0.278 1.278 21 H -0.283 1.283 22 H -0.261 1.261 23 C 0.132 3.868 24 C -0.120 4.120 25 C -0.077 4.077 26 C -0.205 4.205 27 H 0.061 0.939 28 H 0.099 0.901 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.138 0.862 33 H 0.132 0.868 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.047 0.953 37 H 0.080 0.920 38 H 0.058 0.942 39 H 0.266 0.734 40 H 0.019 0.981 41 H 0.101 0.899 42 H 0.075 0.925 43 H 0.004 0.996 44 H 0.048 0.952 45 H 0.136 0.864 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.915 -6.917 4.710 19.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.031 4.031 3 O -0.248 6.248 4 C 0.068 3.932 5 C -0.177 4.177 6 C -0.102 4.102 7 C -0.117 4.117 8 C -0.082 4.082 9 C -0.099 4.099 10 H 0.101 0.899 11 C -0.189 4.189 12 C 0.232 3.768 13 O -0.535 6.535 14 N -0.170 5.170 15 C -0.466 4.466 16 H 0.131 0.869 17 C -0.212 4.212 18 N -0.529 5.529 19 Si 0.814 3.186 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.185 1.185 23 C 0.009 3.991 24 C -0.178 4.178 25 C -0.095 4.095 26 C -0.223 4.223 27 H 0.080 0.920 28 H 0.118 0.882 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.156 0.844 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.085 0.915 36 H 0.067 0.933 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.038 0.962 41 H 0.119 0.881 42 H 0.093 0.907 43 H 0.023 0.977 44 H 0.067 0.933 45 H 0.154 0.846 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.604 -6.728 5.019 19.503 hybrid contribution 0.362 0.277 -0.715 0.848 sum -17.242 -6.451 4.304 18.905 Atomic orbital electron populations 1.21803 0.91514 1.04130 1.03137 1.23057 0.96874 0.80905 1.02236 1.86042 1.18734 1.31209 1.88778 1.19107 0.82649 0.94391 0.97072 1.20546 0.94998 0.95484 1.06703 1.21015 0.92321 0.99151 0.97688 1.19799 0.94749 0.93927 1.03239 1.20155 0.90856 1.02306 0.94843 1.20903 0.91475 1.00082 0.97458 0.89871 1.21728 1.02267 0.94380 1.00556 1.20842 0.90775 0.82441 0.82747 1.90469 1.68630 1.61450 1.32985 1.44101 1.06761 1.58203 1.07951 1.20176 0.95813 1.41911 0.88679 0.86865 1.26060 0.97116 0.96012 1.02048 1.70307 1.10760 1.42558 1.29304 0.84958 0.77955 0.78710 0.76986 1.20373 1.20889 1.18463 1.21412 0.81068 0.96617 0.99996 1.21959 0.99547 0.97486 0.98781 1.21029 0.94740 0.96732 0.97040 1.21403 0.93752 0.98792 1.08395 0.91971 0.88211 0.91821 0.91298 0.91118 0.84418 0.84991 0.92416 0.91498 0.93345 0.90124 0.92310 0.92286 0.96215 0.88108 0.90683 0.97730 0.93258 0.84639 0.83375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 71.98 0.74 -0.85 16 2 C 0.04 0.64 5.46 71.98 0.39 1.04 16 3 O -0.33 -7.41 10.14 -92.46 -0.94 -8.34 16 4 C 0.11 2.75 6.69 22.50 0.15 2.90 16 5 C -0.16 -4.01 9.99 22.37 0.22 -3.79 16 6 C -0.08 -2.28 9.70 22.26 0.22 -2.07 16 7 C -0.12 -3.37 4.72 -19.85 -0.09 -3.47 16 8 C -0.04 -1.52 4.14 29.85 0.12 -1.39 16 9 C -0.08 -3.05 1.86 -11.54 -0.02 -3.07 16 10 H 0.08 3.28 7.16 -2.39 -0.02 3.26 16 11 C -0.13 -4.53 8.59 71.98 0.62 -3.91 16 12 C 0.44 21.83 6.88 87.66 0.60 22.44 16 13 O -0.65 -35.44 15.58 -3.04 -0.05 -35.48 16 14 N -0.45 -23.30 2.64 -635.54 -1.68 -24.98 16 15 C -0.34 -16.68 8.48 84.04 0.71 -15.97 16 16 H 0.11 5.20 5.09 -2.91 -0.01 5.18 16 17 C -0.01 -0.59 5.25 84.93 0.45 -0.15 16 18 N -0.89 -44.40 7.18 21.67 0.16 -44.24 16 19 Si 0.99 38.54 29.55 68.60 2.03 40.57 16 20 H -0.28 -10.80 7.11 99.48 0.71 -10.09 16 21 H -0.28 -10.99 7.11 99.48 0.71 -10.29 16 22 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 23 C 0.13 6.81 5.46 86.38 0.47 7.28 16 24 C -0.12 -5.84 9.46 71.98 0.68 -5.16 16 25 C -0.08 -1.94 7.87 22.25 0.18 -1.76 16 26 C -0.20 -4.57 9.04 22.36 0.20 -4.37 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.90 7.66 -2.38 -0.02 0.89 16 31 H 0.07 0.89 7.66 -2.38 -0.02 0.87 16 32 H 0.14 3.06 8.06 -2.91 -0.02 3.03 16 33 H 0.13 3.40 8.06 -2.92 -0.02 3.38 16 34 H 0.06 2.13 8.06 -2.39 -0.02 2.11 16 35 H 0.07 2.37 8.06 -2.39 -0.02 2.35 16 36 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 37 H 0.08 2.33 5.98 -2.39 -0.01 2.31 16 38 H 0.06 2.17 6.31 -2.39 -0.02 2.16 16 39 H 0.27 12.65 8.31 -92.71 -0.77 11.88 16 40 H 0.02 1.03 7.30 -2.39 -0.02 1.02 16 41 H 0.10 5.37 5.90 -2.38 -0.01 5.36 16 42 H 0.07 3.86 5.86 -2.39 -0.01 3.84 16 43 H 0.00 0.18 8.14 -2.39 -0.02 0.16 16 44 H 0.05 2.14 8.14 -2.39 -0.02 2.13 16 45 H 0.14 3.03 8.00 -2.91 -0.02 3.01 16 46 H 0.15 2.47 6.30 -2.91 -0.02 2.45 16 Total: -1.00 -61.23 362.86 6.12 -55.11 By element: Atomic # 1 Polarization: 28.70 SS G_CDS: 0.96 Total: 29.66 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 5.64 Total: -12.29 kcal Atomic # 7 Polarization: -67.70 SS G_CDS: -1.52 Total: -69.22 kcal Atomic # 8 Polarization: -42.84 SS G_CDS: -0.98 Total: -43.83 kcal Atomic # 14 Polarization: 38.54 SS G_CDS: 2.03 Total: 40.57 kcal Total: -61.23 6.12 -55.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591155191.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.701 kcal (2) G-P(sol) polarization free energy of solvation -61.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.107 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.96 seconds