Wall clock time and date at job start Tue Mar 31 2020 10:27:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35894 * 117.00331 * 2 1 4 4 C 1.38752 * 120.05491 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94228 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05603 * 359.72303 * 5 4 3 7 7 C 1.38246 * 120.11099 * 0.54954 * 6 5 4 8 8 C 1.50699 * 119.97089 * 179.72752 * 7 6 5 9 9 C 1.52996 * 109.46870 * 269.72153 * 8 7 6 10 10 C 1.53000 * 109.47276 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47850 * 180.02562 * 10 9 8 12 12 C 1.48719 * 111.01809 * 74.48652 * 11 10 9 13 13 C 1.54376 * 104.52011 * 158.97198 * 12 11 10 14 14 C 1.54262 * 105.14591 * 336.27171 * 13 12 11 15 15 O 1.42904 * 110.32155 * 240.94627 * 14 13 12 16 16 C 1.50700 * 110.32177 * 118.84699 * 14 13 12 17 17 H 1.08005 * 120.00225 * 0.36842 * 16 14 13 18 18 C 1.37883 * 119.99893 * 180.37233 * 16 14 13 19 19 N 1.31513 * 119.99677 * 186.82428 * 18 16 14 20 20 Si 1.86797 * 120.00012 * 6.82229 * 18 16 14 21 21 H 1.48493 * 109.47165 * 94.01979 * 20 18 16 22 22 H 1.48502 * 109.47125 * 214.02234 * 20 18 16 23 23 H 1.48498 * 109.47077 * 334.01765 * 20 18 16 24 24 C 1.48554 * 111.00662 * 190.00173 * 11 10 9 25 25 C 1.38169 * 120.05444 * 359.45022 * 7 6 5 26 26 H 1.09004 * 109.47179 * 59.99738 * 1 2 3 27 27 H 1.08995 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46992 * 300.00081 * 1 2 3 29 29 H 1.07997 * 120.03192 * 0.03255 * 4 3 2 30 30 H 1.07994 * 119.96769 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.94395 * 180.29761 * 6 5 4 32 32 H 1.09000 * 109.47161 * 149.72853 * 8 7 6 33 33 H 1.08997 * 109.47202 * 29.72697 * 8 7 6 34 34 H 1.09001 * 109.47398 * 60.00362 * 9 8 7 35 35 H 1.08997 * 109.47652 * 300.00268 * 9 8 7 36 36 H 1.09001 * 109.47416 * 59.99871 * 10 9 8 37 37 H 1.09006 * 109.47047 * 300.00372 * 10 9 8 38 38 H 1.09003 * 110.38496 * 40.24473 * 12 11 10 39 39 H 1.08998 * 110.51033 * 277.76003 * 12 11 10 40 40 H 1.09004 * 110.32732 * 217.32714 * 13 12 11 41 41 H 1.08995 * 110.32384 * 95.21652 * 13 12 11 42 42 H 0.96699 * 114.00360 * 298.55249 * 15 14 13 43 43 H 0.97004 * 119.99578 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.41216 * 82.17593 * 24 11 10 45 45 H 1.09008 * 110.40823 * 319.73707 * 24 11 10 46 46 H 1.08002 * 120.02737 * 180.29816 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 0.0047 7 6 4.0561 2.5169 -0.0004 8 6 5.5609 2.5979 -0.0003 9 6 6.0702 2.6246 -1.4427 10 6 7.5981 2.7062 -1.4427 11 7 8.0872 2.7324 -2.8276 12 6 7.8439 4.0591 -3.4542 13 6 8.8447 4.1221 -4.6280 14 6 9.9743 3.1429 -4.2475 15 8 11.2193 3.8370 -4.1455 16 6 10.0743 2.0377 -5.2670 17 1 9.4067 2.0239 -6.1159 18 6 11.0182 1.0439 -5.1161 19 7 11.1967 0.1564 -6.0700 20 14 12.0431 0.9583 -3.5568 21 1 11.3991 0.0319 -2.5914 22 1 13.4040 0.4631 -3.8856 23 1 12.1412 2.3119 -2.9540 24 6 9.5631 2.5701 -2.8743 25 6 3.4311 1.2846 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2129 2.3204 -0.0004 30 1 1.3342 4.5113 -0.0019 31 1 3.7924 4.6379 0.0091 32 1 5.9715 1.7290 0.5139 33 1 5.8758 3.5064 0.5132 34 1 5.6597 3.4935 -1.9571 35 1 5.7553 1.7162 -1.9562 36 1 8.0084 1.8371 -0.9285 37 1 7.9134 3.6145 -0.9291 38 1 8.0440 4.8584 -2.7406 39 1 6.8204 4.1252 -3.8232 40 1 9.2395 5.1325 -4.7351 41 1 8.3637 3.8043 -5.5530 42 1 11.5051 4.2553 -4.9692 43 1 11.8610 -0.5425 -5.9640 44 1 9.8319 1.5160 -2.8061 45 1 10.0334 3.1360 -2.0700 46 1 4.0206 0.3797 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592149988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:58 Heat of formation + Delta-G solvation = -55.169462 kcal Electronic energy + Delta-G solvation = -24664.660508 eV Core-core repulsion = 21133.574601 eV Total energy + Delta-G solvation = -3531.085907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.34518 -38.73465 -37.93475 -35.62844 -33.91263 -32.24483 -31.26392 -30.56786 -28.92674 -28.15251 -27.53319 -25.47834 -23.83860 -22.72537 -22.14243 -20.88492 -20.41865 -19.39999 -17.94693 -17.02983 -16.51046 -16.18516 -15.98218 -15.63054 -15.31264 -14.96582 -14.45422 -14.26760 -13.88880 -13.81591 -13.47337 -13.27099 -13.06803 -12.68807 -12.59183 -12.38579 -12.07304 -11.94229 -11.86894 -11.62398 -11.54935 -11.19515 -11.14406 -11.05665 -10.78057 -10.74245 -10.41793 -10.19202 -9.97235 -9.78134 -8.98067 -8.93516 -8.60440 -8.37796 -8.29509 -7.86836 -6.08071 -4.14805 1.14188 1.28090 3.02704 3.37339 3.47739 3.57250 3.69050 4.39666 4.53447 4.56116 4.63680 4.79874 4.83576 4.88464 4.98704 5.14482 5.16318 5.20834 5.28139 5.33852 5.38862 5.45849 5.47370 5.64892 5.67477 5.74481 5.83639 5.89963 5.90965 5.97305 6.10730 6.19279 6.21161 6.25625 6.29167 6.45321 6.49400 6.52278 6.60390 6.70597 6.91154 7.11763 7.18771 7.45462 7.63758 7.72051 8.34359 8.89760 9.04701 9.57225 11.03012 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002751 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.425121 B =10177.296848 C =10702.498141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.127 3.873 4 C -0.217 4.217 5 C -0.080 4.080 6 C -0.155 4.155 7 C -0.034 4.034 8 C -0.082 4.082 9 C -0.105 4.105 10 C 0.043 3.957 11 N -0.497 5.497 12 C 0.038 3.962 13 C -0.139 4.139 14 C 0.217 3.783 15 O -0.581 6.581 16 C -0.534 4.534 17 H 0.076 0.924 18 C 0.083 3.917 19 N -0.892 5.892 20 Si 0.870 3.130 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.226 1.226 24 C 0.050 3.950 25 C -0.148 4.148 26 H 0.055 0.945 27 H 0.099 0.901 28 H 0.054 0.946 29 H 0.125 0.875 30 H 0.123 0.877 31 H 0.123 0.877 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.070 0.930 37 H 0.031 0.969 38 H 0.032 0.968 39 H 0.071 0.929 40 H 0.056 0.944 41 H 0.073 0.927 42 H 0.363 0.637 43 H 0.264 0.736 44 H 0.080 0.920 45 H 0.029 0.971 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.185 6.256 14.146 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.082 3.918 4 C -0.236 4.236 5 C -0.098 4.098 6 C -0.173 4.173 7 C -0.034 4.034 8 C -0.120 4.120 9 C -0.143 4.143 10 C -0.085 4.085 11 N -0.222 5.222 12 C -0.090 4.090 13 C -0.178 4.178 14 C 0.177 3.823 15 O -0.387 6.387 16 C -0.571 4.571 17 H 0.094 0.906 18 C -0.121 4.121 19 N -0.529 5.529 20 Si 0.698 3.302 21 H -0.216 1.216 22 H -0.226 1.226 23 H -0.149 1.149 24 C -0.077 4.077 25 C -0.167 4.167 26 H 0.073 0.927 27 H 0.117 0.883 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.141 0.859 31 H 0.141 0.859 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.089 0.911 37 H 0.049 0.951 38 H 0.050 0.950 39 H 0.089 0.911 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.210 0.790 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.327 5.275 14.426 24.688 hybrid contribution 0.562 0.641 0.593 1.038 sum -18.766 5.916 15.019 24.753 Atomic orbital electron populations 1.23039 0.78524 1.03887 1.01243 1.86083 1.21276 1.27047 1.88735 1.19020 0.92332 0.84098 0.96333 1.21185 0.99826 0.92493 1.10053 1.20901 0.94608 0.96874 0.97402 1.20979 0.93668 0.98140 1.04519 1.19720 0.95912 0.92057 0.95725 1.20653 0.90025 1.03098 0.98237 1.21483 0.94792 1.03329 0.94659 1.22287 0.95196 1.00433 0.90629 1.65291 1.13124 1.28742 1.15015 1.23062 0.99697 0.89820 0.96416 1.22966 0.97562 0.98990 0.98235 1.19713 0.80538 0.89852 0.92202 1.86509 1.41076 1.72622 1.38486 1.21331 1.19129 1.07678 1.08965 0.90598 1.24993 0.96043 0.94707 0.96353 1.69953 1.34111 1.16199 1.32640 0.87084 0.78727 0.80095 0.84306 1.21586 1.22576 1.14865 1.23249 0.86463 1.00766 0.97266 1.20356 0.91251 0.98482 1.06584 0.92660 0.88280 0.92788 0.85760 0.85929 0.85912 0.90622 0.90843 0.91844 0.90689 0.91115 0.95125 0.94951 0.91095 0.92504 0.90821 0.79032 0.92668 0.90206 0.95298 0.85085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.49 10.50 -19.41 -0.20 -3.69 16 3 C 0.13 1.46 6.69 -39.22 -0.26 1.19 16 4 C -0.22 -2.12 9.04 -39.43 -0.36 -2.48 16 5 C -0.08 -0.75 10.04 -39.60 -0.40 -1.15 16 6 C -0.15 -1.58 9.70 -39.56 -0.38 -1.97 16 7 C -0.03 -0.38 5.13 -104.65 -0.54 -0.92 16 8 C -0.08 -0.89 5.34 -27.89 -0.15 -1.04 16 9 C -0.10 -1.38 5.31 -26.73 -0.14 -1.52 16 10 C 0.04 0.67 4.83 -3.83 -0.02 0.66 16 11 N -0.50 -9.75 5.34 -229.84 -1.23 -10.98 16 12 C 0.04 0.68 5.93 -2.09 -0.01 0.66 16 13 C -0.14 -2.78 6.43 -25.35 -0.16 -2.94 16 14 C 0.22 5.09 0.90 -90.39 -0.08 5.01 16 15 O -0.58 -13.25 10.16 -35.23 -0.36 -13.61 16 16 C -0.53 -14.92 8.82 -34.44 -0.30 -15.23 16 17 H 0.08 2.31 7.60 -52.48 -0.40 1.91 16 18 C 0.08 2.41 5.43 -17.82 -0.10 2.31 16 19 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 20 Si 0.87 22.21 24.05 -169.99 -4.09 18.12 16 21 H -0.29 -7.29 7.09 56.52 0.40 -6.89 16 22 H -0.30 -7.69 7.11 56.52 0.40 -7.29 16 23 H -0.23 -5.61 5.22 56.52 0.30 -5.31 16 24 C 0.05 1.13 4.12 -2.19 -0.01 1.12 16 25 C -0.15 -1.76 9.64 -39.43 -0.38 -2.14 16 26 H 0.05 0.32 7.66 -51.93 -0.40 -0.07 16 27 H 0.10 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.12 0.93 6.30 -52.49 -0.33 0.60 16 30 H 0.12 0.86 8.06 -52.49 -0.42 0.43 16 31 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 32 H 0.08 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.06 0.83 7.47 -51.93 -0.39 0.44 16 35 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 36 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 37 H 0.03 0.45 7.77 -51.93 -0.40 0.04 16 38 H 0.03 0.53 7.75 -51.93 -0.40 0.13 16 39 H 0.07 1.15 7.86 -51.93 -0.41 0.74 16 40 H 0.06 1.02 7.98 -51.93 -0.41 0.60 16 41 H 0.07 1.53 7.42 -51.93 -0.39 1.14 16 42 H 0.36 7.18 9.08 45.56 0.41 7.59 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.08 1.96 4.85 -51.93 -0.25 1.71 16 45 H 0.03 0.63 7.94 -51.92 -0.41 0.22 16 46 H 0.13 1.51 8.06 -52.49 -0.42 1.08 16 LS Contribution 360.94 15.07 5.44 5.44 Total: -1.00 -32.91 360.94 -8.76 -41.67 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -6.79 Total: 6.99 kcal Atomic # 6 Polarization: -14.95 SS G_CDS: -2.30 Total: -17.25 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: -0.45 Total: -37.67 kcal Atomic # 8 Polarization: -16.74 SS G_CDS: -0.56 Total: -17.30 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.09 Total: 18.12 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.91 -8.76 -41.67 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.498 kcal (2) G-P(sol) polarization free energy of solvation -32.914 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds