Wall clock time and date at job start Tue Mar 31 2020 10:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35894 * 117.00331 * 2 1 4 4 C 1.38752 * 120.05491 * 359.97438 * 3 2 1 5 5 C 1.38130 * 119.94228 * 180.02562 * 4 3 2 6 6 C 1.38286 * 120.05603 * 359.72303 * 5 4 3 7 7 C 1.38246 * 120.11099 * 0.54954 * 6 5 4 8 8 C 1.50699 * 119.97089 * 179.72752 * 7 6 5 9 9 C 1.52996 * 109.46870 * 269.72153 * 8 7 6 10 10 C 1.53000 * 109.47276 * 180.02562 * 9 8 7 11 11 N 1.46897 * 109.47850 * 180.02562 * 10 9 8 12 12 C 1.48719 * 111.01809 * 74.48652 * 11 10 9 13 13 C 1.54376 * 104.52011 * 158.97198 * 12 11 10 14 14 C 1.54262 * 105.14591 * 336.27171 * 13 12 11 15 15 O 1.42904 * 110.32155 * 240.94627 * 14 13 12 16 16 C 1.50700 * 110.32177 * 118.84699 * 14 13 12 17 17 H 1.08005 * 120.00225 * 0.36842 * 16 14 13 18 18 C 1.37883 * 119.99893 * 180.37233 * 16 14 13 19 19 N 1.31513 * 119.99677 * 186.82428 * 18 16 14 20 20 Si 1.86797 * 120.00012 * 6.82229 * 18 16 14 21 21 H 1.48493 * 109.47165 * 94.01979 * 20 18 16 22 22 H 1.48502 * 109.47125 * 214.02234 * 20 18 16 23 23 H 1.48498 * 109.47077 * 334.01765 * 20 18 16 24 24 C 1.48554 * 111.00662 * 190.00173 * 11 10 9 25 25 C 1.38169 * 120.05444 * 359.45022 * 7 6 5 26 26 H 1.09004 * 109.47179 * 59.99738 * 1 2 3 27 27 H 1.08995 * 109.47766 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46992 * 300.00081 * 1 2 3 29 29 H 1.07997 * 120.03192 * 0.03255 * 4 3 2 30 30 H 1.07994 * 119.96769 * 179.97438 * 5 4 3 31 31 H 1.07999 * 119.94395 * 180.29761 * 6 5 4 32 32 H 1.09000 * 109.47161 * 149.72853 * 8 7 6 33 33 H 1.08997 * 109.47202 * 29.72697 * 8 7 6 34 34 H 1.09001 * 109.47398 * 60.00362 * 9 8 7 35 35 H 1.08997 * 109.47652 * 300.00268 * 9 8 7 36 36 H 1.09001 * 109.47416 * 59.99871 * 10 9 8 37 37 H 1.09006 * 109.47047 * 300.00372 * 10 9 8 38 38 H 1.09003 * 110.38496 * 40.24473 * 12 11 10 39 39 H 1.08998 * 110.51033 * 277.76003 * 12 11 10 40 40 H 1.09004 * 110.32732 * 217.32714 * 13 12 11 41 41 H 1.08995 * 110.32384 * 95.21652 * 13 12 11 42 42 H 0.96699 * 114.00360 * 298.55249 * 15 14 13 43 43 H 0.97004 * 119.99578 * 179.97438 * 19 18 16 44 44 H 1.08999 * 110.41216 * 82.17593 * 24 11 10 45 45 H 1.09008 * 110.40823 * 319.73707 * 24 11 10 46 46 H 1.08002 * 120.02737 * 180.29816 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2915 2.3752 -0.0005 5 6 1.9211 3.6047 -0.0011 6 6 3.3021 3.6756 0.0047 7 6 4.0561 2.5169 -0.0004 8 6 5.5609 2.5979 -0.0003 9 6 6.0702 2.6246 -1.4427 10 6 7.5981 2.7062 -1.4427 11 7 8.0872 2.7324 -2.8276 12 6 7.8439 4.0591 -3.4542 13 6 8.8447 4.1221 -4.6280 14 6 9.9743 3.1429 -4.2475 15 8 11.2193 3.8370 -4.1455 16 6 10.0743 2.0377 -5.2670 17 1 9.4067 2.0239 -6.1159 18 6 11.0182 1.0439 -5.1161 19 7 11.1967 0.1564 -6.0700 20 14 12.0431 0.9583 -3.5568 21 1 11.3991 0.0319 -2.5914 22 1 13.4040 0.4631 -3.8856 23 1 12.1412 2.3119 -2.9540 24 6 9.5631 2.5701 -2.8743 25 6 3.4311 1.2846 0.0001 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.2129 2.3204 -0.0004 30 1 1.3342 4.5113 -0.0019 31 1 3.7924 4.6379 0.0091 32 1 5.9715 1.7290 0.5139 33 1 5.8758 3.5064 0.5132 34 1 5.6597 3.4935 -1.9571 35 1 5.7553 1.7162 -1.9562 36 1 8.0084 1.8371 -0.9285 37 1 7.9134 3.6145 -0.9291 38 1 8.0440 4.8584 -2.7406 39 1 6.8204 4.1252 -3.8232 40 1 9.2395 5.1325 -4.7351 41 1 8.3637 3.8043 -5.5530 42 1 11.5051 4.2553 -4.9692 43 1 11.8610 -0.5425 -5.9640 44 1 9.8319 1.5160 -2.8061 45 1 10.0334 3.1360 -2.0700 46 1 4.0206 0.3797 0.0010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592149988.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:57 Heat of formation + Delta-G solvation = -79.247154 kcal Electronic energy + Delta-G solvation = -24665.704595 eV Core-core repulsion = 21133.574601 eV Total energy + Delta-G solvation = -3532.129994 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.08763 -40.30351 -38.74360 -37.12978 -35.06134 -34.43104 -32.40250 -31.42414 -30.18866 -29.84366 -28.15726 -26.88637 -25.48772 -23.54877 -23.29612 -21.92635 -21.69282 -21.10470 -19.09051 -18.68294 -17.31105 -17.21978 -17.03308 -16.92014 -16.64246 -16.34079 -15.85347 -15.49198 -15.19080 -14.96687 -14.66941 -14.53893 -14.29508 -14.20678 -13.79123 -13.69050 -13.50285 -13.29369 -12.95951 -12.79051 -12.65571 -12.52878 -12.35613 -12.14810 -12.05062 -11.86994 -11.83648 -11.71690 -11.59370 -11.37084 -10.96074 -10.76078 -10.21619 -9.74691 -9.31961 -9.13543 -8.33399 -6.42683 0.37071 0.50981 1.33933 1.39689 1.64503 2.38273 2.39653 2.77544 2.97285 3.10541 3.71979 3.78452 3.89469 3.94557 4.07520 4.15020 4.23790 4.28476 4.30431 4.37765 4.41695 4.43488 4.45841 4.52891 4.55781 4.59474 4.69040 4.71597 4.77249 4.83879 4.89732 4.91212 5.06934 5.12858 5.20286 5.30512 5.34477 5.38198 5.42722 5.51458 5.61819 5.71515 5.87120 5.95599 6.14315 6.24775 6.47690 6.66953 7.19743 7.37683 8.81620 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021184 B = 0.002751 C = 0.002616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.425121 B =10177.296848 C =10702.498141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.342 6.342 3 C 0.110 3.890 4 C -0.219 4.219 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.044 4.044 8 C -0.074 4.074 9 C -0.093 4.093 10 C 0.043 3.957 11 N -0.520 5.520 12 C 0.045 3.955 13 C -0.136 4.136 14 C 0.211 3.789 15 O -0.583 6.583 16 C -0.531 4.531 17 H 0.035 0.965 18 C 0.028 3.972 19 N -0.941 5.941 20 Si 0.934 3.066 21 H -0.287 1.287 22 H -0.303 1.303 23 H -0.210 1.210 24 C 0.053 3.947 25 C -0.173 4.173 26 H 0.063 0.937 27 H 0.115 0.885 28 H 0.067 0.933 29 H 0.147 0.853 30 H 0.151 0.849 31 H 0.141 0.859 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.068 0.932 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.057 0.943 39 H 0.087 0.913 40 H 0.082 0.918 41 H 0.055 0.945 42 H 0.375 0.625 43 H 0.265 0.735 44 H 0.053 0.947 45 H 0.041 0.959 46 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.495 8.689 16.354 27.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.256 6.256 3 C 0.065 3.935 4 C -0.237 4.237 5 C -0.099 4.099 6 C -0.179 4.179 7 C -0.044 4.044 8 C -0.112 4.112 9 C -0.131 4.131 10 C -0.085 4.085 11 N -0.245 5.245 12 C -0.083 4.083 13 C -0.175 4.175 14 C 0.171 3.829 15 O -0.390 6.390 16 C -0.569 4.569 17 H 0.053 0.947 18 C -0.171 4.171 19 N -0.581 5.581 20 Si 0.760 3.240 21 H -0.214 1.214 22 H -0.231 1.231 23 H -0.132 1.132 24 C -0.075 4.075 25 C -0.192 4.192 26 H 0.081 0.919 27 H 0.133 0.867 28 H 0.085 0.915 29 H 0.164 0.836 30 H 0.168 0.832 31 H 0.159 0.841 32 H 0.094 0.906 33 H 0.110 0.890 34 H 0.086 0.914 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.068 0.932 38 H 0.075 0.925 39 H 0.105 0.895 40 H 0.100 0.900 41 H 0.074 0.926 42 H 0.224 0.776 43 H 0.073 0.927 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -20.657 7.730 16.638 27.628 hybrid contribution 0.847 -0.109 -0.176 0.872 sum -19.810 7.621 16.462 26.861 Atomic orbital electron populations 1.23317 0.76506 1.05405 1.02251 1.86047 1.23502 1.27283 1.88814 1.19235 0.92474 0.84928 0.96823 1.21489 1.01003 0.92071 1.09160 1.21282 0.94675 0.97768 0.96143 1.21258 0.94215 0.98421 1.04055 1.19790 0.96093 0.92218 0.96322 1.20571 0.89911 1.04052 0.96634 1.21353 0.93177 1.02415 0.96186 1.22378 0.96402 1.01191 0.88536 1.65246 1.11122 1.30336 1.17838 1.23079 0.99833 0.89614 0.95744 1.22883 0.96858 0.99226 0.98503 1.19675 0.81973 0.89438 0.91833 1.86446 1.40833 1.72404 1.39357 1.21618 1.17521 1.09017 1.08732 0.94689 1.25793 0.97617 0.94521 0.99121 1.70086 1.35630 1.17511 1.34840 0.86097 0.76592 0.80670 0.80659 1.21408 1.23055 1.13223 1.23036 0.88690 0.99134 0.96648 1.20488 0.91946 0.98698 1.08055 0.91854 0.86681 0.91455 0.83555 0.83173 0.84145 0.90623 0.88991 0.91359 0.92882 0.91515 0.93168 0.92499 0.89470 0.89975 0.92642 0.77607 0.92655 0.92881 0.94094 0.86089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.81 113.37 1.11 1.34 16 2 O -0.34 -7.43 10.50 -92.35 -0.97 -8.40 16 3 C 0.11 2.47 6.69 22.51 0.15 2.62 16 4 C -0.22 -3.84 9.04 22.37 0.20 -3.64 16 5 C -0.08 -1.30 10.04 22.26 0.22 -1.07 16 6 C -0.16 -2.89 9.70 22.28 0.22 -2.68 16 7 C -0.04 -0.93 5.13 -19.88 -0.10 -1.03 16 8 C -0.07 -1.46 5.34 29.85 0.16 -1.30 16 9 C -0.09 -2.30 5.31 30.59 0.16 -2.14 16 10 C 0.04 1.24 4.83 86.30 0.42 1.65 16 11 N -0.52 -19.50 5.34 -881.08 -4.70 -24.20 16 12 C 0.04 1.46 5.93 86.42 0.51 1.97 16 13 C -0.14 -5.21 6.43 31.49 0.20 -5.01 16 14 C 0.21 9.69 0.90 -10.65 -0.01 9.68 16 15 O -0.58 -25.34 10.16 -148.98 -1.51 -26.85 16 16 C -0.53 -30.34 8.82 25.60 0.23 -30.11 16 17 H 0.03 2.23 7.60 -2.91 -0.02 2.21 16 18 C 0.03 1.68 5.43 84.66 0.46 2.14 16 19 N -0.94 -59.88 13.96 21.45 0.30 -59.58 16 20 Si 0.93 46.56 24.05 68.60 1.65 48.21 16 21 H -0.29 -14.09 7.09 99.48 0.71 -13.38 16 22 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 23 H -0.21 -9.85 5.22 99.48 0.52 -9.33 16 24 C 0.05 2.30 4.12 86.45 0.36 2.65 16 25 C -0.17 -4.13 9.64 22.37 0.22 -3.91 16 26 H 0.06 0.64 7.66 -2.39 -0.02 0.62 16 27 H 0.11 0.94 8.14 -2.39 -0.02 0.93 16 28 H 0.07 0.61 7.66 -2.38 -0.02 0.59 16 29 H 0.15 1.79 6.30 -2.91 -0.02 1.77 16 30 H 0.15 1.52 8.06 -2.91 -0.02 1.50 16 31 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 32 H 0.08 1.48 8.08 -2.39 -0.02 1.46 16 33 H 0.09 1.48 8.08 -2.39 -0.02 1.46 16 34 H 0.07 1.61 7.47 -2.39 -0.02 1.59 16 35 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 37 H 0.05 1.27 7.77 -2.38 -0.02 1.25 16 38 H 0.06 1.60 7.75 -2.39 -0.02 1.58 16 39 H 0.09 2.57 7.86 -2.39 -0.02 2.55 16 40 H 0.08 2.69 7.98 -2.38 -0.02 2.67 16 41 H 0.05 2.29 7.42 -2.39 -0.02 2.27 16 42 H 0.38 14.15 9.08 -74.06 -0.67 13.48 16 43 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 44 H 0.05 2.57 4.85 -2.39 -0.01 2.56 16 45 H 0.04 1.66 7.94 -2.38 -0.02 1.65 16 46 H 0.12 2.95 8.06 -2.91 -0.02 2.93 16 Total: -1.00 -72.64 360.94 -0.63 -73.26 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: 0.10 Total: 26.39 kcal Atomic # 6 Polarization: -33.33 SS G_CDS: 4.50 Total: -28.83 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.40 Total: -83.79 kcal Atomic # 8 Polarization: -32.77 SS G_CDS: -2.48 Total: -35.25 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 1.65 Total: 48.21 kcal Total: -72.64 -0.63 -73.26 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592149988.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.982 kcal (2) G-P(sol) polarization free energy of solvation -72.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds