Wall clock time and date at job start Tue Mar 31 2020 10:54:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30995 * 1 3 3 C 1.50708 * 120.00114 * 2 1 4 4 C 1.53001 * 109.46793 * 125.00318 * 3 2 1 5 5 N 1.46898 * 109.46798 * 180.02562 * 4 3 2 6 6 C 1.46898 * 111.00059 * 179.97438 * 5 4 3 7 7 C 1.50700 * 109.47526 * 180.02562 * 6 5 4 8 8 C 1.38246 * 119.92759 * 90.00118 * 7 6 5 9 9 C 1.38242 * 120.14884 * 180.02562 * 8 7 6 10 10 C 1.38565 * 119.99815 * 359.97438 * 9 8 7 11 11 O 1.35996 * 120.07637 * 179.97438 * 10 9 8 12 12 C 1.42898 * 116.99713 * 0.02562 * 11 10 9 13 13 C 1.39160 * 119.85398 * 0.02562 * 10 9 8 14 14 O 1.35995 * 120.07175 * 180.02562 * 13 10 9 15 15 C 1.42903 * 116.99587 * 180.02562 * 14 13 10 16 16 C 1.53000 * 109.46726 * 180.02562 * 15 14 13 17 17 C 1.50706 * 109.46735 * 180.02562 * 16 15 14 18 18 H 1.07996 * 119.99928 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99611 * 179.97438 * 17 16 15 20 20 N 1.31511 * 120.00327 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99743 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.46999 * 0.02562 * 21 19 17 23 23 H 1.48504 * 109.46979 * 120.00025 * 21 19 17 24 24 H 1.48498 * 109.46942 * 239.99938 * 21 19 17 25 25 C 1.38248 * 119.92374 * 270.25810 * 7 6 5 26 26 H 1.08004 * 119.99889 * 359.97438 * 1 2 3 27 27 H 1.07996 * 120.00414 * 179.97438 * 1 2 3 28 28 H 1.07997 * 120.00166 * 180.02562 * 2 1 3 29 29 H 1.08997 * 109.46594 * 5.00172 * 3 2 1 30 30 H 1.08996 * 109.47080 * 245.00239 * 3 2 1 31 31 H 1.08995 * 109.47168 * 60.00380 * 4 3 2 32 32 H 1.08996 * 109.47243 * 299.99820 * 4 3 2 33 33 H 1.00896 * 111.00336 * 303.95820 * 5 4 3 34 34 H 1.09000 * 109.46733 * 59.99875 * 6 5 4 35 35 H 1.09000 * 109.47115 * 300.00470 * 6 5 4 36 36 H 1.08004 * 119.92680 * 359.97438 * 8 7 6 37 37 H 1.07997 * 120.00411 * 179.97438 * 9 8 7 38 38 H 1.09002 * 109.46922 * 59.99615 * 12 11 10 39 39 H 1.09000 * 109.47236 * 180.02562 * 12 11 10 40 40 H 1.09005 * 109.47392 * 300.00389 * 12 11 10 41 41 H 1.09002 * 109.47382 * 60.00075 * 15 14 13 42 42 H 1.09001 * 109.46938 * 300.00061 * 15 14 13 43 43 H 1.09001 * 109.47194 * 299.99575 * 16 15 14 44 44 H 1.08992 * 109.47399 * 59.99748 * 16 15 14 45 45 H 0.97000 * 120.00354 * 180.02562 * 20 19 17 46 46 H 1.07994 * 120.00428 * 0.02562 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0351 1.3330 1.1816 5 7 3.7692 2.6054 1.1820 6 6 4.7132 2.6682 2.3057 7 6 5.4457 3.9849 2.2735 8 6 4.9304 5.0774 2.9460 9 6 5.5982 6.2875 2.9191 10 6 6.7871 6.4072 2.2175 11 8 7.4451 7.5971 2.1896 12 6 6.8536 8.6824 2.9066 13 6 7.3058 5.3075 1.5406 14 8 8.4726 5.4200 0.8511 15 6 8.9447 4.2501 0.1799 16 6 10.2597 4.5679 -0.5348 17 6 10.7572 3.3343 -1.2432 18 1 10.1923 2.4155 -1.1887 19 6 11.9337 3.3788 -1.9608 20 7 12.6214 4.4978 -2.0275 21 14 12.5509 1.8495 -2.8383 22 1 11.6017 0.7306 -2.6096 23 1 12.6528 2.1217 -4.2946 24 1 13.8883 1.4809 -2.3088 25 6 6.6286 4.0989 1.5672 26 1 -0.5400 0.9354 0.0004 27 1 -0.5400 -0.9352 -0.0004 28 1 1.8500 -0.9353 -0.0004 29 1 1.3586 2.1316 0.0896 30 1 2.6213 1.4027 -0.9314 31 1 3.7400 0.5065 1.0919 32 1 2.4774 1.2355 2.1130 33 1 4.2428 2.7499 0.3029 34 1 5.4300 1.8512 2.2240 35 1 4.1668 2.5797 3.2447 36 1 4.0036 4.9855 3.4929 37 1 5.1934 7.1395 3.4449 38 1 6.7699 8.4186 3.9609 39 1 7.4778 9.5700 2.8022 40 1 5.8617 8.8867 2.5034 41 1 8.2031 3.9258 -0.5502 42 1 9.1098 3.4554 0.9075 43 1 10.0949 5.3626 -1.2623 44 1 11.0010 4.8919 0.1955 45 1 13.4489 4.5292 -2.5327 46 1 7.0267 3.2452 1.0390 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594967640.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:01 Heat of formation + Delta-G solvation = -44.739733 kcal Electronic energy + Delta-G solvation = -23971.862649 eV Core-core repulsion = 20441.229009 eV Total energy + Delta-G solvation = -3530.633640 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.31747 -38.16737 -37.68210 -36.44886 -34.41639 -33.34545 -31.12754 -30.56687 -29.43073 -28.53479 -27.16576 -25.15865 -24.51649 -22.50116 -22.33418 -21.22480 -20.47439 -20.02210 -18.24762 -17.03179 -16.54081 -16.19494 -15.85257 -15.79431 -15.27473 -14.96911 -14.80503 -14.71482 -14.58749 -14.42028 -13.90958 -13.69673 -13.31090 -12.75372 -12.63074 -12.37969 -12.31377 -11.98115 -11.85468 -11.57429 -11.48072 -11.32897 -11.18364 -11.03052 -10.93529 -10.79924 -10.73851 -10.53449 -9.82048 -9.64592 -9.63076 -9.26332 -8.69824 -8.46414 -8.43147 -7.47253 -6.08564 -4.13166 1.40948 1.62229 1.97760 3.26994 3.33892 3.37314 3.44016 3.74138 3.83032 4.19177 4.41665 4.71469 4.74549 4.84586 4.87392 4.96351 5.04755 5.09793 5.18790 5.23076 5.27738 5.28751 5.35700 5.44147 5.50955 5.58660 5.58926 5.63459 5.72567 5.83343 5.85958 6.05784 6.05980 6.30997 6.32972 6.36825 6.46435 6.64018 6.73565 6.79646 6.87899 7.19007 7.35028 7.58370 7.68281 7.85763 8.12876 8.26262 8.92728 9.50908 11.03052 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.007749 B = 0.003520 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3612.637155 B = 7953.159782 C =11254.887326 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.152 4.152 3 C -0.094 4.094 4 C 0.062 3.938 5 N -0.687 5.687 6 C 0.105 3.895 7 C -0.084 4.084 8 C -0.108 4.108 9 C -0.176 4.176 10 C 0.090 3.910 11 O -0.303 6.303 12 C 0.028 3.972 13 C 0.119 3.881 14 O -0.304 6.304 15 C 0.065 3.935 16 C 0.026 3.974 17 C -0.525 4.525 18 H 0.058 0.942 19 C 0.060 3.940 20 N -0.889 5.889 21 Si 0.898 3.102 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.172 4.172 26 H 0.097 0.903 27 H 0.096 0.904 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.072 0.928 33 H 0.345 0.655 34 H 0.039 0.961 35 H 0.079 0.921 36 H 0.122 0.878 37 H 0.130 0.870 38 H 0.051 0.949 39 H 0.097 0.903 40 H 0.051 0.949 41 H 0.049 0.951 42 H 0.048 0.952 43 H 0.028 0.972 44 H 0.028 0.972 45 H 0.263 0.737 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.498 -1.712 10.070 23.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.170 4.170 3 C -0.132 4.132 4 C -0.067 4.067 5 N -0.318 5.318 6 C -0.024 4.024 7 C -0.085 4.085 8 C -0.127 4.127 9 C -0.195 4.195 10 C 0.045 3.955 11 O -0.216 6.216 12 C -0.067 4.067 13 C 0.072 3.928 14 O -0.218 6.218 15 C -0.009 4.009 16 C -0.012 4.012 17 C -0.563 4.563 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.192 4.192 26 H 0.115 0.885 27 H 0.114 0.886 28 H 0.125 0.875 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.049 0.951 32 H 0.090 0.910 33 H 0.163 0.837 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.140 0.860 37 H 0.148 0.852 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.067 0.933 43 H 0.046 0.954 44 H 0.046 0.954 45 H 0.072 0.928 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -21.506 -1.087 10.203 23.828 hybrid contribution 0.836 -1.541 -0.700 1.888 sum -20.670 -2.628 9.504 22.901 Atomic orbital electron populations 1.23864 0.95962 1.01828 1.01478 1.22929 0.96071 0.98423 0.99598 1.20744 0.98492 0.95525 0.98427 1.21905 0.95774 0.90077 0.98922 1.60524 1.30764 1.33866 1.06680 1.20781 0.93078 0.93465 0.95031 1.19338 0.94727 0.95421 0.98980 1.20539 0.99577 0.91663 1.00889 1.20957 0.95525 0.99432 1.03551 1.18354 0.92873 0.85253 0.99047 1.86243 1.48400 1.17036 1.69945 1.23015 0.99174 0.88809 0.95737 1.18400 0.88340 0.91594 0.94448 1.86286 1.33877 1.39186 1.62408 1.23315 0.98629 0.84873 0.94072 1.19115 0.88744 0.97982 0.95320 1.21005 1.07365 0.96228 1.31725 0.92392 1.24992 0.96534 0.96321 0.96371 1.69989 1.15642 1.25829 1.41223 0.86446 0.78774 0.82854 0.79389 1.19681 1.20838 1.20847 1.21027 0.97178 0.96898 1.04054 0.88517 0.88611 0.87474 0.90569 0.90909 0.95073 0.90962 0.83676 0.94284 0.90284 0.86022 0.85236 0.93049 0.88435 0.93024 0.93318 0.93337 0.95353 0.95367 0.92773 0.84845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.38 14.32 29.02 0.42 -0.96 16 2 C -0.15 -1.16 9.52 -36.02 -0.34 -1.50 16 3 C -0.09 -0.77 5.92 -27.88 -0.16 -0.94 16 4 C 0.06 0.55 5.67 -3.82 -0.02 0.53 16 5 N -0.69 -7.14 6.49 -115.06 -0.75 -7.88 16 6 C 0.10 1.13 5.81 -4.98 -0.03 1.10 16 7 C -0.08 -1.10 5.39 -104.62 -0.56 -1.67 16 8 C -0.11 -1.34 9.69 -39.58 -0.38 -1.72 16 9 C -0.18 -2.30 9.04 -39.46 -0.36 -2.66 16 10 C 0.09 1.49 6.70 -39.12 -0.26 1.23 16 11 O -0.30 -5.04 10.28 -34.23 -0.35 -5.39 16 12 C 0.03 0.30 9.81 101.05 0.99 1.29 16 13 C 0.12 2.20 6.70 -39.12 -0.26 1.93 16 14 O -0.30 -6.65 9.92 -34.23 -0.34 -6.99 16 15 C 0.07 1.43 4.68 37.16 0.17 1.61 16 16 C 0.03 0.68 5.34 -27.88 -0.15 0.54 16 17 C -0.52 -14.76 9.11 -34.44 -0.31 -15.08 16 18 H 0.06 1.55 7.74 -52.49 -0.41 1.15 16 19 C 0.06 1.71 5.46 -17.82 -0.10 1.62 16 20 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 21 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 22 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 C -0.17 -2.70 8.69 -39.46 -0.34 -3.04 16 26 H 0.10 0.65 7.84 -52.48 -0.41 0.24 16 27 H 0.10 0.57 8.06 -52.49 -0.42 0.15 16 28 H 0.11 0.75 8.06 -52.49 -0.42 0.33 16 29 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.34 3.71 8.72 -39.29 -0.34 3.37 16 34 H 0.04 0.42 8.09 -51.93 -0.42 0.00 16 35 H 0.08 0.76 8.08 -51.93 -0.42 0.34 16 36 H 0.12 1.24 8.06 -52.48 -0.42 0.81 16 37 H 0.13 1.32 6.30 -52.49 -0.33 0.99 16 38 H 0.05 0.46 7.66 -51.93 -0.40 0.07 16 39 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 40 H 0.05 0.47 7.66 -51.93 -0.40 0.07 16 41 H 0.05 1.01 7.65 -51.93 -0.40 0.61 16 42 H 0.05 1.01 7.67 -51.93 -0.40 0.61 16 43 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 45 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 46 H 0.13 2.04 6.30 -52.49 -0.33 1.71 16 LS Contribution 385.53 15.07 5.81 5.81 Total: -1.00 -31.79 385.53 -9.22 -41.01 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.60 Total: 0.80 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -1.71 Total: -17.72 kcal Atomic # 7 Polarization: -33.86 SS G_CDS: -0.01 Total: -33.87 kcal Atomic # 8 Polarization: -11.68 SS G_CDS: -0.69 Total: -12.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -31.79 -9.22 -41.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594967640.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.733 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds