Wall clock time and date at job start Tue Mar 31 2020 10:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35901 * 117.00100 * 2 1 4 4 C 1.38746 * 120.05347 * 359.97438 * 3 2 1 5 5 C 1.38125 * 119.94265 * 179.97438 * 4 3 2 6 6 C 1.38292 * 120.05450 * 359.97438 * 5 4 3 7 7 C 1.38239 * 120.11034 * 0.04808 * 6 5 4 8 8 C 1.50703 * 119.96883 * 179.97438 * 7 6 5 9 9 N 1.46894 * 112.85345 * 18.75408 * 8 7 6 10 10 C 1.46903 * 110.99924 * 65.80646 * 9 8 7 11 11 C 1.53001 * 109.47102 * 183.95486 * 10 9 8 12 12 O 1.42904 * 109.47386 * 64.99812 * 11 10 9 13 13 C 1.42895 * 114.00290 * 180.02562 * 12 11 10 14 14 C 1.50701 * 109.47409 * 180.02562 * 13 12 11 15 15 H 1.07997 * 119.99579 * 359.97438 * 14 13 12 16 16 C 1.37875 * 120.00245 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00018 * 179.97438 * 16 14 13 18 18 Si 1.86796 * 119.99865 * 359.97438 * 16 14 13 19 19 H 1.48504 * 109.47102 * 90.00335 * 18 16 14 20 20 H 1.48498 * 109.47561 * 209.99966 * 18 16 14 21 21 H 1.48504 * 109.47584 * 330.00302 * 18 16 14 22 22 C 1.53788 * 113.61322 * 149.95349 * 8 7 6 23 23 C 1.54053 * 86.98471 * 140.01511 * 22 8 7 24 24 C 1.53777 * 87.07630 * 334.56637 * 23 22 8 25 25 C 1.38163 * 120.05947 * 0.24292 * 7 6 5 26 26 H 1.08994 * 109.47256 * 300.00662 * 1 2 3 27 27 H 1.09008 * 109.46717 * 60.00445 * 1 2 3 28 28 H 1.08998 * 109.47614 * 180.02562 * 1 2 3 29 29 H 1.07998 * 120.03534 * 359.95994 * 4 3 2 30 30 H 1.07995 * 119.97406 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.94416 * 180.02562 * 6 5 4 32 32 H 1.00896 * 111.00319 * 189.75833 * 9 8 7 33 33 H 1.09000 * 109.47004 * 303.95150 * 10 9 8 34 34 H 1.08998 * 109.46898 * 63.95299 * 10 9 8 35 35 H 1.08998 * 109.47324 * 184.99672 * 11 10 9 36 36 H 1.09004 * 109.47148 * 304.99847 * 11 10 9 37 37 H 1.09000 * 109.47289 * 300.00012 * 13 12 11 38 38 H 1.08997 * 109.46978 * 59.99627 * 13 12 11 39 39 H 0.96999 * 120.00301 * 180.02562 * 17 16 14 40 40 H 1.09001 * 113.60881 * 254.60756 * 22 8 7 41 41 H 1.09002 * 113.61484 * 25.51390 * 22 8 7 42 42 H 1.08999 * 113.61993 * 220.01966 * 23 22 8 43 43 H 1.09003 * 113.68672 * 89.12416 * 23 22 8 44 44 H 1.08996 * 113.61905 * 270.87502 * 24 23 22 45 45 H 1.09008 * 113.61005 * 139.97724 * 24 23 22 46 46 H 1.08001 * 120.03008 * 179.72437 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2914 2.3752 -0.0005 5 6 1.9209 3.6047 0.0000 6 6 3.3020 3.6757 0.0016 7 6 4.0560 2.5170 0.0017 8 6 5.5608 2.5981 0.0028 9 7 6.0612 3.9085 0.4390 10 6 5.7329 4.1545 1.8496 11 6 6.1815 5.5644 2.2392 12 8 5.4244 6.5261 1.5016 13 6 5.7673 7.8826 1.7920 14 6 4.9117 8.8056 0.9632 15 1 4.1795 8.3971 0.2824 16 6 5.0642 10.1715 1.0732 17 7 4.3178 10.9769 0.3496 18 14 6.3311 10.8779 2.2502 19 1 7.6271 11.0399 1.5435 20 1 5.8670 12.1999 2.7421 21 1 6.5066 9.9555 3.4007 22 6 6.2410 1.4129 0.7084 23 6 7.2891 1.4478 -0.4201 24 6 6.2058 2.0945 -1.2992 25 6 3.4312 1.2847 -0.0049 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 0.0005 29 1 0.2128 2.3204 -0.0016 30 1 1.3341 4.5113 0.0000 31 1 3.7923 4.6380 0.0024 32 1 7.0544 3.9876 0.2798 33 1 4.6563 4.0630 1.9933 34 1 6.2464 3.4240 2.4748 35 1 6.0192 5.7154 3.3064 36 1 7.2409 5.6844 2.0122 37 1 5.5968 8.0820 2.8500 38 1 6.8180 8.0503 1.5555 39 1 4.4254 11.9378 0.4267 40 1 6.6452 1.6625 1.6895 41 1 5.6380 0.5049 0.7163 42 1 7.5961 0.4593 -0.7618 43 1 8.1336 2.1053 -0.2133 44 1 5.5932 1.3727 -1.8393 45 1 6.5816 2.8940 -1.9379 46 1 4.0207 0.3798 -0.0094 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595846904.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:14 Heat of formation + Delta-G solvation = -28.749457 kcal Electronic energy + Delta-G solvation = -25197.610107 eV Core-core repulsion = 21667.669857 eV Total energy + Delta-G solvation = -3529.940250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.71998 -39.45218 -36.99167 -36.83997 -33.85739 -32.48207 -31.10320 -30.11700 -28.70549 -27.38921 -27.09234 -25.80015 -24.47209 -22.54583 -21.82431 -21.57866 -21.21454 -18.93220 -17.87575 -16.88095 -16.27589 -16.19080 -15.82114 -15.80379 -15.39253 -15.33479 -14.89192 -14.48861 -14.01093 -13.76243 -13.70162 -13.29596 -13.15054 -12.96718 -12.69675 -12.43297 -12.28863 -12.16080 -12.06695 -11.52147 -11.41960 -11.13179 -11.02481 -10.96406 -10.80053 -10.70943 -10.57016 -10.37489 -10.24740 -9.83029 -9.12692 -8.79614 -8.71568 -8.41258 -8.22644 -8.05062 -6.07628 -4.05767 1.38431 1.61288 3.17748 3.26681 3.33648 3.35030 3.83314 4.09166 4.38601 4.45356 4.58905 4.60342 4.71548 4.81116 4.86570 4.97590 5.01676 5.08238 5.23841 5.26810 5.30414 5.44082 5.48572 5.56728 5.61831 5.65643 5.68669 5.72768 5.75689 5.89688 5.93358 5.98151 6.00508 6.06274 6.18054 6.28540 6.38601 6.64911 6.69784 6.80352 6.93201 7.04816 7.20399 7.41891 7.53015 7.64878 8.09519 8.72846 9.05506 9.52314 11.05525 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015170 B = 0.003480 C = 0.002997 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1845.281906 B = 8045.172923 C = 9340.263179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.323 6.323 3 C 0.114 3.886 4 C -0.211 4.211 5 C -0.082 4.082 6 C -0.123 4.123 7 C -0.028 4.028 8 C 0.137 3.863 9 N -0.646 5.646 10 C 0.061 3.939 11 C 0.062 3.938 12 O -0.364 6.364 13 C 0.168 3.832 14 C -0.514 4.514 15 H 0.083 0.917 16 C 0.071 3.929 17 N -0.897 5.897 18 Si 0.875 3.125 19 H -0.275 1.275 20 H -0.283 1.283 21 H -0.267 1.267 22 C -0.172 4.172 23 C -0.144 4.144 24 C -0.125 4.125 25 C -0.152 4.152 26 H 0.054 0.946 27 H 0.054 0.946 28 H 0.096 0.904 29 H 0.122 0.878 30 H 0.127 0.873 31 H 0.151 0.849 32 H 0.344 0.656 33 H 0.085 0.915 34 H 0.037 0.963 35 H 0.041 0.959 36 H 0.035 0.965 37 H -0.001 1.001 38 H -0.004 1.004 39 H 0.265 0.735 40 H 0.068 0.932 41 H 0.088 0.912 42 H 0.069 0.931 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.500 -23.501 0.476 23.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.237 6.237 3 C 0.070 3.930 4 C -0.229 4.229 5 C -0.101 4.101 6 C -0.141 4.141 7 C -0.029 4.029 8 C 0.045 3.955 9 N -0.277 5.277 10 C -0.068 4.068 11 C -0.016 4.016 12 O -0.283 6.283 13 C 0.092 3.908 14 C -0.552 4.552 15 H 0.101 0.899 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.702 3.298 19 H -0.200 1.200 20 H -0.209 1.209 21 H -0.192 1.192 22 C -0.212 4.212 23 C -0.181 4.181 24 C -0.163 4.163 25 C -0.171 4.171 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.140 0.860 30 H 0.145 0.855 31 H 0.169 0.831 32 H 0.164 0.836 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.053 0.947 37 H 0.017 0.983 38 H 0.014 0.986 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.107 0.893 42 H 0.087 0.913 43 H 0.098 0.902 44 H 0.106 0.894 45 H 0.098 0.902 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.143 -23.165 0.070 23.194 hybrid contribution 1.167 0.184 1.290 1.749 sum 0.024 -22.981 1.360 23.021 Atomic orbital electron populations 1.22997 0.78734 1.03507 1.01366 1.86021 1.21101 1.27288 1.89252 1.18859 0.92129 0.83928 0.98123 1.21226 0.99696 0.92577 1.09441 1.21107 0.95099 0.96896 0.96951 1.21434 0.93175 1.00000 0.99455 1.19269 0.93851 0.92109 0.97670 1.20787 0.90256 0.87980 0.96515 1.60152 1.20452 1.26950 1.20103 1.22041 1.02524 0.94600 0.87649 1.22302 0.95010 0.89358 0.94915 1.87992 1.60481 1.15523 1.64304 1.20577 0.95200 0.79515 0.95464 1.20890 1.20738 0.89707 1.23817 0.89886 1.24764 0.95957 0.96601 0.95708 1.69875 1.39715 1.03550 1.40393 0.86866 0.82145 0.78879 0.81913 1.20016 1.20893 1.19189 1.23841 0.98751 1.00148 0.98426 1.22900 0.96849 1.01237 0.97115 1.23086 0.97090 1.00310 0.95768 1.20123 0.91096 0.97952 1.07898 0.92774 0.92756 0.88581 0.85971 0.85546 0.83085 0.83621 0.89677 0.94466 0.94082 0.94654 0.98310 0.98626 0.92458 0.91347 0.89325 0.91254 0.90210 0.89394 0.90212 0.85648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.79 10.50 -19.43 -0.20 -3.99 16 3 C 0.11 1.48 6.69 -39.22 -0.26 1.21 16 4 C -0.21 -2.67 9.04 -39.44 -0.36 -3.03 16 5 C -0.08 -1.17 10.04 -39.60 -0.40 -1.57 16 6 C -0.12 -1.90 7.98 -39.56 -0.32 -2.21 16 7 C -0.03 -0.39 4.72 -104.65 -0.49 -0.88 16 8 C 0.14 1.66 1.03 -131.94 -0.14 1.52 16 9 N -0.65 -8.96 5.42 -100.31 -0.54 -9.50 16 10 C 0.06 0.87 5.31 -3.82 -0.02 0.85 16 11 C 0.06 1.07 6.25 37.16 0.23 1.30 16 12 O -0.36 -8.34 10.27 -35.23 -0.36 -8.70 16 13 C 0.17 4.27 4.76 36.01 0.17 4.44 16 14 C -0.51 -15.30 9.99 -34.44 -0.34 -15.64 16 15 H 0.08 2.71 8.06 -52.49 -0.42 2.28 16 16 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 17 N -0.90 -27.80 13.96 55.43 0.77 -27.02 16 18 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 19 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 20 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 21 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 22 C -0.17 -1.73 6.99 -25.77 -0.18 -1.91 16 23 C -0.14 -1.28 7.75 -25.78 -0.20 -1.48 16 24 C -0.12 -1.32 7.27 -25.92 -0.19 -1.51 16 25 C -0.15 -1.94 8.92 -39.43 -0.35 -2.30 16 26 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 27 H 0.05 0.39 7.66 -51.92 -0.40 -0.01 16 28 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.12 1.27 6.30 -52.49 -0.33 0.94 16 30 H 0.13 1.70 8.06 -52.49 -0.42 1.27 16 31 H 0.15 2.75 6.99 -52.49 -0.37 2.38 16 32 H 0.34 4.34 7.93 -39.29 -0.31 4.03 16 33 H 0.08 1.34 6.21 -51.93 -0.32 1.02 16 34 H 0.04 0.45 6.74 -51.93 -0.35 0.10 16 35 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.00 -0.02 7.20 -51.93 -0.37 -0.39 16 38 H 0.00 -0.10 7.57 -51.93 -0.39 -0.49 16 39 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 40 H 0.07 0.69 6.70 -51.93 -0.35 0.34 16 41 H 0.09 0.85 5.99 -51.93 -0.31 0.54 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.68 7.73 -51.93 -0.40 0.28 16 44 H 0.09 0.89 7.96 -51.93 -0.41 0.48 16 45 H 0.08 0.89 8.14 -51.92 -0.42 0.47 16 46 H 0.13 1.42 6.24 -52.49 -0.33 1.09 16 LS Contribution 364.41 15.07 5.49 5.49 Total: -1.00 -32.55 364.41 -8.63 -41.18 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -7.17 Total: 3.67 kcal Atomic # 6 Polarization: -16.04 SS G_CDS: -1.95 Total: -17.99 kcal Atomic # 7 Polarization: -36.76 SS G_CDS: 0.23 Total: -36.53 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: -0.57 Total: -12.70 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -32.55 -8.63 -41.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595846904.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.430 kcal (2) G-P(sol) polarization free energy of solvation -32.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds