Wall clock time and date at job start Tue Mar 31 2020 08:41:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47196 * 2 1 4 4 C 1.46904 * 111.00049 * 199.49455 * 3 2 1 5 5 C 1.50704 * 109.46645 * 66.04416 * 4 3 2 6 6 H 1.07999 * 120.00089 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99603 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00038 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46964 * 89.99702 * 9 7 5 11 11 H 1.48502 * 109.47281 * 210.00028 * 9 7 5 12 12 H 1.48503 * 109.47271 * 329.99971 * 9 7 5 13 13 C 1.46895 * 111.00047 * 75.54170 * 3 2 1 14 14 C 1.50700 * 109.47384 * 200.44463 * 13 3 2 15 15 C 1.38265 * 119.94514 * 83.99978 * 14 13 3 16 16 C 1.38145 * 120.05563 * 180.02562 * 15 14 13 17 17 C 1.38733 * 119.94469 * 359.97438 * 16 15 14 18 18 O 1.35903 * 120.05294 * 180.02562 * 17 16 15 19 19 C 1.42894 * 117.00277 * 356.41810 * 18 17 16 20 20 H 1.09004 * 110.83375 * 327.59932 * 19 18 17 21 21 C 1.54801 * 110.90829 * 203.94664 * 19 18 17 22 22 C 1.54100 * 104.18829 * 220.92371 * 21 19 18 23 23 O 1.43742 * 107.29250 * 357.96998 * 22 21 19 24 24 C 1.44368 * 106.97544 * 26.51593 * 23 22 21 25 25 C 1.38727 * 119.88940 * 0.27673 * 17 16 15 26 26 C 1.38155 * 119.94078 * 359.47054 * 25 17 16 27 27 H 1.09007 * 109.47245 * 184.11080 * 1 2 3 28 28 H 1.08997 * 109.47093 * 304.10670 * 1 2 3 29 29 H 1.08993 * 109.47132 * 64.11454 * 1 2 3 30 30 H 1.08995 * 109.47339 * 239.99354 * 2 1 3 31 31 H 1.09005 * 109.47080 * 119.99890 * 2 1 3 32 32 H 1.08999 * 109.47125 * 186.04259 * 4 3 2 33 33 H 1.08999 * 109.46708 * 306.04901 * 4 3 2 34 34 H 0.97000 * 119.99906 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47430 * 80.44608 * 13 3 2 36 36 H 1.08997 * 109.47748 * 320.44498 * 13 3 2 37 37 H 1.07995 * 119.97227 * 359.97438 * 15 14 13 38 38 H 1.08003 * 120.02890 * 180.02562 * 16 15 14 39 39 H 1.09002 * 110.48974 * 102.24665 * 21 19 18 40 40 H 1.08997 * 110.49001 * 339.59963 * 21 19 18 41 41 H 1.08998 * 109.88192 * 117.39538 * 22 21 19 42 42 H 1.09003 * 109.88163 * 238.39150 * 22 21 19 43 43 H 1.09000 * 110.62441 * 78.44240 * 24 23 22 44 44 H 1.09006 * 110.62148 * 201.28203 * 24 23 22 45 45 H 1.07993 * 120.03234 * 179.72129 * 25 17 16 46 46 H 1.07997 * 119.96925 * 180.27814 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4141 1.4504 -0.4577 5 6 3.4864 1.0444 -1.9072 6 1 2.5866 0.7661 -2.4356 7 6 4.7015 1.0283 -2.5587 8 7 5.7972 1.3676 -1.9153 9 14 4.7912 0.5258 -4.3555 10 1 4.6277 1.7264 -5.2140 11 1 6.1089 -0.1023 -4.6287 12 1 3.7085 -0.4462 -4.6524 13 6 1.8723 1.9954 1.3279 14 6 1.8955 3.4965 1.1962 15 6 0.7362 4.1793 0.8776 16 6 0.7549 5.5552 0.7558 17 6 1.9382 6.2520 0.9539 18 8 1.9590 7.6056 0.8351 19 6 0.7452 8.2399 0.4271 20 1 0.1793 7.5967 -0.2469 21 6 1.0325 9.6118 -0.2299 22 6 -0.0716 10.5338 0.3228 23 8 -0.9175 9.7312 1.1633 24 6 -0.1095 8.6411 1.6563 25 6 3.1011 5.5641 1.2683 26 6 3.0760 4.1885 1.3942 27 1 -0.3634 -1.0251 0.0737 28 1 -0.3633 0.5762 0.8509 29 1 -0.3633 0.4486 -0.9245 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7855 2.4691 -0.3467 33 1 4.0247 0.7737 0.1401 34 1 6.6521 1.3559 -2.3735 35 1 2.6936 1.6743 1.9687 36 1 0.9251 1.6840 1.7681 37 1 -0.1845 3.6365 0.7231 38 1 -0.1510 6.0882 0.5073 39 1 0.9602 9.5379 -1.3150 40 1 2.0167 9.9768 0.0638 41 1 0.3752 11.3384 0.9068 42 1 -0.6519 10.9516 -0.5000 43 1 0.5283 8.9754 2.4746 44 1 -0.7391 7.8108 1.9765 45 1 4.0244 6.1037 1.4186 46 1 3.9801 3.6530 1.6434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596983407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:45 Heat of formation + Delta-G solvation = -52.984454 kcal Electronic energy + Delta-G solvation = -24961.503375 eV Core-core repulsion = 21430.512217 eV Total energy + Delta-G solvation = -3530.991158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.51276 -39.10980 -37.65653 -36.18124 -32.65186 -32.03555 -30.93945 -30.73642 -29.42077 -29.04602 -26.82648 -24.49724 -23.30857 -22.91610 -22.34213 -21.58579 -20.67053 -19.66289 -18.45075 -16.94557 -16.40599 -16.06888 -15.70900 -15.58609 -15.16518 -14.71522 -14.54912 -14.33703 -14.12892 -13.74886 -13.52014 -13.36283 -13.15580 -13.01098 -12.49595 -12.37420 -12.04790 -11.95569 -11.79808 -11.58428 -11.26851 -11.18599 -11.09770 -10.88415 -10.69223 -10.64838 -10.46682 -10.41003 -10.11926 -10.03054 -9.75781 -9.16021 -8.65261 -8.40487 -7.80786 -7.21604 -6.00870 -4.01179 1.67669 1.74123 2.96995 3.32826 3.38761 3.42031 3.74952 4.02142 4.15767 4.43577 4.45319 4.56041 4.78532 4.87730 5.05855 5.07688 5.11305 5.31891 5.34683 5.35863 5.39602 5.45292 5.49490 5.60433 5.64269 5.72682 5.76048 5.91998 5.96723 6.01975 6.09297 6.13086 6.36023 6.39499 6.42659 6.55820 6.65173 6.73098 6.80459 7.05352 7.07014 7.34732 7.37214 7.56826 7.83012 8.13338 8.24424 8.57702 9.06194 9.62444 11.10028 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003334 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.209982 B = 8397.077095 C = 9317.029961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.055 3.945 3 N -0.532 5.532 4 C 0.191 3.809 5 C -0.505 4.505 6 H 0.062 0.938 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 C 0.092 3.908 14 C -0.089 4.089 15 C -0.060 4.060 16 C -0.213 4.213 17 C 0.112 3.888 18 O -0.304 6.304 19 C 0.051 3.949 20 H 0.094 0.906 21 C -0.154 4.154 22 C 0.049 3.951 23 O -0.373 6.373 24 C 0.027 3.973 25 C -0.148 4.148 26 C -0.064 4.064 27 H 0.046 0.954 28 H 0.044 0.956 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.017 0.983 32 H 0.036 0.964 33 H -0.012 1.012 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.068 0.932 37 H 0.122 0.878 38 H 0.122 0.878 39 H 0.089 0.911 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.126 0.874 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.859 12.613 7.699 18.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.073 4.073 3 N -0.257 5.257 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.080 0.920 7 C -0.146 4.146 8 N -0.538 5.538 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 C -0.036 4.036 14 C -0.090 4.090 15 C -0.079 4.079 16 C -0.231 4.231 17 C 0.068 3.932 18 O -0.218 6.218 19 C -0.006 4.006 20 H 0.112 0.888 21 C -0.192 4.192 22 C -0.028 4.028 23 O -0.292 6.292 24 C -0.050 4.050 25 C -0.166 4.166 26 C -0.083 4.083 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.076 0.924 30 H 0.104 0.896 31 H 0.035 0.965 32 H 0.054 0.946 33 H 0.006 0.994 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.087 0.913 37 H 0.140 0.860 38 H 0.140 0.860 39 H 0.107 0.893 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.107 0.893 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.144 0.856 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -11.007 13.060 7.417 18.621 hybrid contribution 0.829 -0.757 -0.671 1.308 sum -10.179 12.303 6.746 17.334 Atomic orbital electron populations 1.21798 0.96709 0.99940 1.01627 1.21980 0.94143 0.90265 1.00923 1.62135 1.25511 1.16496 1.21509 1.19786 0.81280 0.97102 0.95238 1.21161 0.93166 1.44452 0.95600 0.91962 1.24968 0.95689 0.95674 0.98228 1.69955 0.98400 1.48880 1.36550 0.86540 0.77202 0.78701 0.85216 1.20694 1.21355 1.19890 1.20978 1.00202 0.90281 0.92161 1.19762 0.93051 0.95732 1.00408 1.20708 0.98212 0.92675 0.96269 1.21120 0.97054 0.95579 1.09360 1.18908 0.94516 0.81522 0.98249 1.86077 1.34460 1.17899 1.83342 1.23926 0.85786 0.94502 0.96373 0.88804 1.22978 1.01019 0.93477 1.01724 1.23146 0.91657 0.93749 0.94260 1.88904 1.34530 1.39919 1.65797 1.24061 0.94300 0.90304 0.96290 1.20326 0.96304 0.93898 1.06089 1.20954 0.97805 0.92714 0.96811 0.93528 0.93659 0.92384 0.89558 0.96458 0.94582 0.99400 0.93006 0.94860 0.91338 0.86026 0.86004 0.89277 0.88999 0.91854 0.89309 0.90908 0.88180 0.85626 0.85388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 10.06 37.16 0.37 -1.83 16 2 C 0.06 1.05 5.51 -3.82 -0.02 1.03 16 3 N -0.53 -11.26 4.34 -237.52 -1.03 -12.29 16 4 C 0.19 4.91 4.54 -4.97 -0.02 4.89 16 5 C -0.51 -14.15 8.23 -34.44 -0.28 -14.44 16 6 H 0.06 1.74 7.31 -52.49 -0.38 1.35 16 7 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.61 13.29 55.43 0.74 -25.88 16 9 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 C 0.09 1.63 4.95 -4.98 -0.02 1.61 16 14 C -0.09 -1.54 5.05 -104.60 -0.53 -2.06 16 15 C -0.06 -0.94 9.72 -39.61 -0.38 -1.32 16 16 C -0.21 -3.06 8.97 -39.43 -0.35 -3.42 16 17 C 0.11 1.71 6.68 -39.22 -0.26 1.45 16 18 O -0.30 -4.17 9.90 -19.44 -0.19 -4.36 16 19 C 0.05 0.56 2.91 -24.73 -0.07 0.49 16 20 H 0.09 1.02 6.13 -51.93 -0.32 0.70 16 21 C -0.15 -1.35 6.78 -25.21 -0.17 -1.52 16 22 C 0.05 0.39 7.70 37.73 0.29 0.68 16 23 O -0.37 -4.00 11.52 -35.23 -0.41 -4.41 16 24 C 0.03 0.28 7.37 38.21 0.28 0.56 16 25 C -0.15 -2.38 9.99 -39.43 -0.39 -2.77 16 26 C -0.06 -1.11 8.44 -39.60 -0.33 -1.45 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.04 0.64 6.66 -51.93 -0.35 0.29 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 1.84 6.58 -51.93 -0.34 1.49 16 31 H 0.02 0.32 8.00 -51.93 -0.42 -0.10 16 32 H 0.04 0.99 6.40 -51.93 -0.33 0.66 16 33 H -0.01 -0.33 8.12 -51.93 -0.42 -0.75 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.03 0.60 7.89 -51.93 -0.41 0.19 16 36 H 0.07 1.06 6.41 -51.93 -0.33 0.73 16 37 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 38 H 0.12 1.46 5.74 -52.48 -0.30 1.16 16 39 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.79 8.08 -51.93 -0.42 0.37 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.10 0.94 7.95 -51.93 -0.41 0.52 16 45 H 0.13 1.85 8.06 -52.49 -0.42 1.42 16 46 H 0.13 2.21 8.00 -52.49 -0.42 1.79 16 LS Contribution 368.82 15.07 5.56 5.56 Total: -1.00 -31.00 368.82 -9.73 -40.73 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -7.37 Total: 0.54 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -2.00 Total: -16.63 kcal Atomic # 7 Polarization: -37.87 SS G_CDS: -0.29 Total: -38.17 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: -0.60 Total: -8.77 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -31.00 -9.73 -40.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596983407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.257 kcal (2) G-P(sol) polarization free energy of solvation -30.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds