Wall clock time and date at job start Tue Mar 31 2020 08:41:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46898 * 109.47196 * 2 1 4 4 C 1.46904 * 111.00049 * 199.49455 * 3 2 1 5 5 C 1.50704 * 109.46645 * 66.04416 * 4 3 2 6 6 H 1.07999 * 120.00089 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99603 * 180.02562 * 5 4 3 8 8 N 1.31519 * 120.00084 * 359.97438 * 7 5 4 9 9 Si 1.86795 * 120.00038 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.46964 * 89.99702 * 9 7 5 11 11 H 1.48502 * 109.47281 * 210.00028 * 9 7 5 12 12 H 1.48503 * 109.47271 * 329.99971 * 9 7 5 13 13 C 1.46895 * 111.00047 * 75.54170 * 3 2 1 14 14 C 1.50700 * 109.47384 * 200.44463 * 13 3 2 15 15 C 1.38265 * 119.94514 * 83.99978 * 14 13 3 16 16 C 1.38145 * 120.05563 * 180.02562 * 15 14 13 17 17 C 1.38733 * 119.94469 * 359.97438 * 16 15 14 18 18 O 1.35903 * 120.05294 * 180.02562 * 17 16 15 19 19 C 1.42894 * 117.00277 * 356.41810 * 18 17 16 20 20 H 1.09004 * 110.83375 * 327.59932 * 19 18 17 21 21 C 1.54801 * 110.90829 * 203.94664 * 19 18 17 22 22 C 1.54100 * 104.18829 * 220.92371 * 21 19 18 23 23 O 1.43742 * 107.29250 * 357.96998 * 22 21 19 24 24 C 1.44368 * 106.97544 * 26.51593 * 23 22 21 25 25 C 1.38727 * 119.88940 * 0.27673 * 17 16 15 26 26 C 1.38155 * 119.94078 * 359.47054 * 25 17 16 27 27 H 1.09007 * 109.47245 * 184.11080 * 1 2 3 28 28 H 1.08997 * 109.47093 * 304.10670 * 1 2 3 29 29 H 1.08993 * 109.47132 * 64.11454 * 1 2 3 30 30 H 1.08995 * 109.47339 * 239.99354 * 2 1 3 31 31 H 1.09005 * 109.47080 * 119.99890 * 2 1 3 32 32 H 1.08999 * 109.47125 * 186.04259 * 4 3 2 33 33 H 1.08999 * 109.46708 * 306.04901 * 4 3 2 34 34 H 0.97000 * 119.99906 * 179.97438 * 8 7 5 35 35 H 1.09005 * 109.47430 * 80.44608 * 13 3 2 36 36 H 1.08997 * 109.47748 * 320.44498 * 13 3 2 37 37 H 1.07995 * 119.97227 * 359.97438 * 15 14 13 38 38 H 1.08003 * 120.02890 * 180.02562 * 16 15 14 39 39 H 1.09002 * 110.48974 * 102.24665 * 21 19 18 40 40 H 1.08997 * 110.49001 * 339.59963 * 21 19 18 41 41 H 1.08998 * 109.88192 * 117.39538 * 22 21 19 42 42 H 1.09003 * 109.88163 * 238.39150 * 22 21 19 43 43 H 1.09000 * 110.62441 * 78.44240 * 24 23 22 44 44 H 1.09006 * 110.62148 * 201.28203 * 24 23 22 45 45 H 1.07993 * 120.03234 * 179.72129 * 25 17 16 46 46 H 1.07997 * 119.96925 * 180.27814 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4141 1.4504 -0.4577 5 6 3.4864 1.0444 -1.9072 6 1 2.5866 0.7661 -2.4356 7 6 4.7015 1.0283 -2.5587 8 7 5.7972 1.3676 -1.9153 9 14 4.7912 0.5258 -4.3555 10 1 4.6277 1.7264 -5.2140 11 1 6.1089 -0.1023 -4.6287 12 1 3.7085 -0.4462 -4.6524 13 6 1.8723 1.9954 1.3279 14 6 1.8955 3.4965 1.1962 15 6 0.7362 4.1793 0.8776 16 6 0.7549 5.5552 0.7558 17 6 1.9382 6.2520 0.9539 18 8 1.9590 7.6056 0.8351 19 6 0.7452 8.2399 0.4271 20 1 0.1793 7.5967 -0.2469 21 6 1.0325 9.6118 -0.2299 22 6 -0.0716 10.5338 0.3228 23 8 -0.9175 9.7312 1.1633 24 6 -0.1095 8.6411 1.6563 25 6 3.1011 5.5641 1.2683 26 6 3.0760 4.1885 1.3942 27 1 -0.3634 -1.0251 0.0737 28 1 -0.3633 0.5762 0.8509 29 1 -0.3633 0.4486 -0.9245 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 3.7855 2.4691 -0.3467 33 1 4.0247 0.7737 0.1401 34 1 6.6521 1.3559 -2.3735 35 1 2.6936 1.6743 1.9687 36 1 0.9251 1.6840 1.7681 37 1 -0.1845 3.6365 0.7231 38 1 -0.1510 6.0882 0.5073 39 1 0.9602 9.5379 -1.3150 40 1 2.0167 9.9768 0.0638 41 1 0.3752 11.3384 0.9068 42 1 -0.6519 10.9516 -0.5000 43 1 0.5283 8.9754 2.4746 44 1 -0.7391 7.8108 1.9765 45 1 4.0244 6.1037 1.4186 46 1 3.9801 3.6530 1.6434 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596983407.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:43 Heat of formation + Delta-G solvation = -71.788213 kcal Electronic energy + Delta-G solvation = -24962.318767 eV Core-core repulsion = 21430.512217 eV Total energy + Delta-G solvation = -3531.806550 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.39 seconds Orbital eigenvalues (eV) -41.51708 -40.14130 -38.92418 -37.58046 -34.75727 -32.99460 -32.18240 -31.86566 -31.00640 -29.87208 -28.56692 -26.04109 -24.37829 -24.20430 -23.70017 -22.73935 -21.77532 -21.20818 -19.49373 -18.53756 -17.74608 -17.08446 -17.00021 -16.54945 -16.45428 -16.19318 -15.99645 -15.60449 -15.43130 -15.21289 -14.65750 -14.40341 -14.35056 -14.20609 -14.13870 -13.86102 -13.34387 -13.11746 -12.98826 -12.81500 -12.58750 -12.55443 -12.48413 -12.46644 -12.26260 -12.13451 -11.76417 -11.62251 -11.57611 -11.45591 -11.16411 -10.76366 -10.59145 -9.89125 -9.07834 -8.91540 -8.18347 -6.27088 0.42838 0.48859 1.39826 1.41191 1.51924 2.00430 2.40521 2.76746 2.99942 3.14369 3.38199 3.51720 3.68259 3.76092 3.89917 3.97298 4.05737 4.14075 4.16740 4.25400 4.34517 4.46826 4.52572 4.57933 4.61279 4.66675 4.72650 4.78152 4.79237 4.81680 4.89484 4.98078 5.07384 5.11382 5.18596 5.23447 5.32494 5.39060 5.42511 5.50936 5.67204 5.68816 5.78880 5.86404 6.10879 6.41715 6.45311 6.69049 6.89590 7.41741 8.92450 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014755 B = 0.003334 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1897.209982 B = 8397.077095 C = 9317.029961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.209 3.791 5 C -0.520 4.520 6 H 0.060 0.940 7 C 0.002 3.998 8 N -0.933 5.933 9 Si 0.964 3.036 10 H -0.276 1.276 11 H -0.282 1.282 12 H -0.263 1.263 13 C 0.095 3.905 14 C -0.110 4.110 15 C -0.060 4.060 16 C -0.207 4.207 17 C 0.114 3.886 18 O -0.311 6.311 19 C 0.041 3.959 20 H 0.097 0.903 21 C -0.152 4.152 22 C 0.047 3.953 23 O -0.389 6.389 24 C 0.031 3.969 25 C -0.162 4.162 26 C -0.082 4.082 27 H 0.070 0.930 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.022 0.978 32 H 0.013 0.987 33 H -0.045 1.045 34 H 0.263 0.737 35 H 0.023 0.977 36 H 0.098 0.902 37 H 0.142 0.858 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.091 0.909 41 H 0.074 0.926 42 H 0.107 0.893 43 H 0.072 0.928 44 H 0.107 0.893 45 H 0.131 0.869 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.199 13.377 6.920 20.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.076 4.076 3 N -0.260 5.260 4 C 0.082 3.918 5 C -0.558 4.558 6 H 0.079 0.921 7 C -0.196 4.196 8 N -0.574 5.574 9 Si 0.789 3.211 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.188 1.188 13 C -0.033 4.033 14 C -0.111 4.111 15 C -0.079 4.079 16 C -0.225 4.225 17 C 0.070 3.930 18 O -0.225 6.225 19 C -0.015 4.015 20 H 0.115 0.885 21 C -0.189 4.189 22 C -0.029 4.029 23 O -0.308 6.308 24 C -0.046 4.046 25 C -0.181 4.181 26 C -0.101 4.101 27 H 0.089 0.911 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.076 0.924 31 H 0.040 0.960 32 H 0.031 0.969 33 H -0.027 1.027 34 H 0.071 0.929 35 H 0.041 0.959 36 H 0.117 0.883 37 H 0.160 0.840 38 H 0.168 0.832 39 H 0.118 0.882 40 H 0.110 0.890 41 H 0.092 0.908 42 H 0.125 0.875 43 H 0.090 0.910 44 H 0.125 0.875 45 H 0.149 0.851 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.373 13.829 6.648 20.354 hybrid contribution 1.540 -0.906 -0.377 1.826 sum -11.833 12.924 6.271 18.611 Atomic orbital electron populations 1.21694 0.93150 1.01880 1.02080 1.22045 0.96947 0.88867 0.99774 1.62095 1.22170 1.17988 1.23796 1.19389 0.83624 0.94633 0.94133 1.21473 0.93256 1.44358 0.96715 0.92133 1.25864 0.95281 0.95571 1.02887 1.70087 0.98972 1.49869 1.38466 0.85460 0.77551 0.78574 0.79516 1.20130 1.20795 1.18769 1.21031 1.01244 0.90690 0.90290 1.19811 0.93806 0.95436 1.02021 1.20945 0.98180 0.93299 0.95437 1.21397 0.97765 0.95260 1.08080 1.18971 0.94372 0.82365 0.97328 1.86076 1.36198 1.16999 1.83240 1.24196 0.85002 0.95275 0.97068 0.88542 1.23023 1.01336 0.92292 1.02287 1.23317 0.91465 0.93477 0.94689 1.88889 1.35335 1.40263 1.66302 1.24034 0.94218 0.90547 0.95820 1.20435 0.97355 0.93629 1.06669 1.20939 0.97641 0.93454 0.98023 0.91080 0.91847 0.92992 0.92390 0.95999 0.96912 1.02697 0.92858 0.95907 0.88346 0.84013 0.83209 0.88199 0.89035 0.90755 0.87519 0.90991 0.87471 0.85082 0.86946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.69 10.06 71.98 0.72 -2.96 16 2 C 0.05 1.95 5.51 86.30 0.48 2.43 16 3 N -0.54 -22.92 4.34 -905.37 -3.93 -26.85 16 4 C 0.21 11.19 4.54 85.56 0.39 11.58 16 5 C -0.52 -29.79 8.23 25.60 0.21 -29.58 16 6 H 0.06 3.42 7.31 -2.91 -0.02 3.40 16 7 C 0.00 0.10 5.46 84.65 0.46 0.57 16 8 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 9 Si 0.96 44.90 29.54 68.60 2.03 46.92 16 10 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 13 C 0.09 3.37 4.95 85.56 0.42 3.80 16 14 C -0.11 -3.82 5.05 -19.85 -0.10 -3.92 16 15 C -0.06 -1.78 9.72 22.25 0.22 -1.56 16 16 C -0.21 -5.57 8.97 22.37 0.20 -5.37 16 17 C 0.11 3.39 6.68 22.51 0.15 3.54 16 18 O -0.31 -8.18 9.90 -92.46 -0.92 -9.10 16 19 C 0.04 0.82 2.91 31.89 0.09 0.91 16 20 H 0.10 1.87 6.13 -2.38 -0.01 1.85 16 21 C -0.15 -2.35 6.78 31.58 0.21 -2.14 16 22 C 0.05 0.64 7.70 72.35 0.56 1.20 16 23 O -0.39 -7.50 11.52 -148.98 -1.72 -9.22 16 24 C 0.03 0.56 7.37 72.67 0.54 1.10 16 25 C -0.16 -5.36 9.99 22.37 0.22 -5.14 16 26 C -0.08 -2.96 8.44 22.26 0.19 -2.77 16 27 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.06 1.56 6.66 -2.39 -0.02 1.55 16 29 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.06 2.50 6.58 -2.39 -0.02 2.49 16 31 H 0.02 0.80 8.00 -2.38 -0.02 0.78 16 32 H 0.01 0.74 6.40 -2.39 -0.02 0.72 16 33 H -0.04 -2.62 8.12 -2.39 -0.02 -2.64 16 34 H 0.26 15.08 8.31 -92.71 -0.77 14.30 16 35 H 0.02 0.85 7.89 -2.38 -0.02 0.83 16 36 H 0.10 2.86 6.41 -2.39 -0.02 2.85 16 37 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.15 3.14 5.74 -2.91 -0.02 3.12 16 39 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 40 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 41 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 42 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.11 1.76 7.95 -2.38 -0.02 1.75 16 45 H 0.13 4.01 8.06 -2.91 -0.02 3.99 16 46 H 0.11 4.26 8.00 -2.91 -0.02 4.24 16 Total: -1.00 -67.88 368.82 1.66 -66.22 By element: Atomic # 1 Polarization: 15.93 SS G_CDS: 0.95 Total: 16.89 kcal Atomic # 6 Polarization: -33.29 SS G_CDS: 4.96 Total: -28.33 kcal Atomic # 7 Polarization: -79.74 SS G_CDS: -3.65 Total: -83.39 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -2.63 Total: -18.31 kcal Atomic # 14 Polarization: 44.90 SS G_CDS: 2.03 Total: 46.92 kcal Total: -67.88 1.66 -66.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596983407.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.571 kcal (2) G-P(sol) polarization free energy of solvation -67.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.39 seconds