Wall clock time and date at job start Tue Mar 31 2020 09:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47130 * 2 1 4 4 C 1.35897 * 117.00053 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.05886 * 0.02562 * 4 3 2 6 6 C 1.38118 * 119.94697 * 179.68565 * 5 4 3 7 7 C 1.38290 * 120.05348 * 0.56216 * 6 5 4 8 8 C 1.50699 * 119.94152 * 179.72696 * 7 6 5 9 9 N 1.46906 * 109.47317 * 259.72982 * 8 7 6 10 10 C 1.47897 * 110.99555 * 69.87469 * 9 8 7 11 11 C 1.54000 * 107.05672 * 145.84575 * 10 9 8 12 12 C 1.54598 * 105.22213 * 358.72428 * 11 10 9 13 13 O 1.42900 * 110.72206 * 96.45416 * 12 11 10 14 14 C 1.50709 * 110.72231 * 219.73162 * 12 11 10 15 15 H 1.07997 * 119.99484 * 118.54840 * 14 12 11 16 16 C 1.37869 * 119.99916 * 298.55075 * 14 12 11 17 17 N 1.31519 * 120.00697 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 89.99908 * 18 16 14 20 20 H 1.48498 * 109.47364 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.46995 * 330.00007 * 18 16 14 22 22 C 1.48533 * 111.00245 * 187.27419 * 9 8 7 23 23 C 1.38240 * 120.11154 * 359.46477 * 7 6 5 24 24 C 1.50700 * 119.97296 * 180.27317 * 23 7 6 25 25 C 1.38166 * 120.05643 * 0.23732 * 23 7 6 26 26 H 1.09004 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47051 * 299.99731 * 1 2 3 28 28 H 1.08997 * 109.47593 * 59.99891 * 1 2 3 29 29 H 1.09005 * 109.46864 * 240.00961 * 2 1 3 30 30 H 1.08995 * 109.47185 * 120.00440 * 2 1 3 31 31 H 1.08001 * 120.02527 * 359.95820 * 5 4 3 32 32 H 1.08002 * 119.97664 * 180.32185 * 6 5 4 33 33 H 1.09004 * 109.46704 * 139.73410 * 8 7 6 34 34 H 1.08991 * 109.47304 * 19.73150 * 8 7 6 35 35 H 1.09000 * 109.91881 * 26.49521 * 10 9 8 36 36 H 1.09002 * 110.08496 * 265.28456 * 10 9 8 37 37 H 1.09002 * 110.31026 * 117.69182 * 11 10 9 38 38 H 1.09000 * 110.30915 * 239.76211 * 11 10 9 39 39 H 0.96701 * 114.00035 * 61.44787 * 13 12 11 40 40 H 0.96995 * 120.00378 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.66452 * 318.71648 * 22 9 8 42 42 H 1.08998 * 110.66933 * 81.84247 * 22 9 8 43 43 H 1.08993 * 109.47705 * 89.99093 * 24 23 7 44 44 H 1.08998 * 109.47098 * 209.99462 * 24 23 7 45 45 H 1.09009 * 109.46819 * 329.98994 * 24 23 7 46 46 H 1.07996 * 120.02682 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5688 0.6095 -0.0087 7 6 6.0961 1.8879 -0.0030 8 6 7.5901 2.0853 -0.0046 9 7 8.0456 2.3873 1.3590 10 6 7.9300 1.1988 2.2317 11 6 9.1036 1.2535 3.2273 12 6 9.9024 2.5204 2.8439 13 8 9.5199 3.6266 3.6636 14 6 11.3846 2.2671 2.9451 15 1 12.0080 2.3517 2.0673 16 6 11.9447 1.9275 4.1583 17 7 11.1856 1.8249 5.2274 18 14 13.7820 1.6143 4.2839 19 1 14.4806 2.8864 4.5987 20 1 14.0432 0.6263 5.3612 21 1 14.2827 1.0813 2.9914 22 6 9.4836 2.7593 1.3698 23 6 5.2551 2.9850 -0.0014 24 6 5.8331 4.3768 -0.0014 25 6 3.8850 2.8066 -0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7886 -0.5728 -0.0013 32 1 6.2280 -0.2460 -0.0148 33 1 7.8464 2.9138 -0.6650 34 1 8.0764 1.1758 -0.3570 35 1 7.9934 0.2905 1.6325 36 1 6.9835 1.2218 2.7719 37 1 8.7303 1.3361 4.2481 38 1 9.7287 0.3665 3.1243 39 1 9.6879 3.4941 4.6066 40 1 11.5796 1.5856 6.0808 41 1 10.0528 2.1145 0.7002 42 1 9.6120 3.8070 1.0980 43 1 5.9713 4.7128 -1.0290 44 1 5.1511 5.0534 0.5135 45 1 6.7950 4.3707 0.5114 46 1 3.2284 3.6641 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597158404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:12 Heat of formation + Delta-G solvation = -65.912628 kcal Electronic energy + Delta-G solvation = -25327.177333 eV Core-core repulsion = 21795.625567 eV Total energy + Delta-G solvation = -3531.551766 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.25483 -38.67040 -37.50887 -34.69348 -32.55243 -32.20770 -32.08877 -30.92536 -28.77886 -27.93846 -26.99337 -25.15530 -23.85423 -23.62981 -21.80201 -20.73388 -19.76396 -19.40661 -17.82608 -16.97379 -16.24360 -16.21842 -15.41848 -15.22305 -14.87414 -14.47157 -14.26271 -13.78322 -13.66080 -13.56286 -13.16037 -13.00666 -12.91077 -12.82913 -12.56251 -12.20307 -11.89780 -11.74048 -11.64115 -11.55820 -11.29753 -11.23666 -11.08970 -10.76292 -10.67622 -10.65382 -10.52390 -10.41470 -10.27430 -9.72551 -9.12587 -8.65086 -8.57021 -8.11818 -7.93497 -7.64820 -6.18545 -4.26869 1.45475 1.53645 3.11036 3.23130 3.30304 3.32929 3.80466 4.31143 4.66862 4.68296 4.80138 4.89577 4.96562 4.99725 5.06974 5.14333 5.21806 5.35823 5.47114 5.51074 5.55670 5.71307 5.74809 5.76909 5.85354 5.87482 5.97134 6.02392 6.07213 6.14680 6.23393 6.33151 6.44686 6.50099 6.55985 6.65811 6.86290 6.90549 6.94403 7.09303 7.42897 7.44300 7.54802 7.60357 7.75546 7.84941 8.21761 8.75718 9.42047 9.58835 10.88349 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002952 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.838319 B = 9481.734113 C = 9854.360526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.320 6.320 4 C 0.124 3.876 5 C -0.216 4.216 6 C -0.071 4.071 7 C -0.103 4.103 8 C 0.086 3.914 9 N -0.505 5.505 10 C 0.042 3.958 11 C -0.129 4.129 12 C 0.258 3.742 13 O -0.580 6.580 14 C -0.537 4.537 15 H 0.060 0.940 16 C 0.071 3.929 17 N -0.894 5.894 18 Si 0.898 3.102 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.051 3.949 23 C -0.020 4.020 24 C -0.122 4.122 25 C -0.157 4.157 26 H 0.076 0.924 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.122 0.878 32 H 0.120 0.880 33 H 0.078 0.922 34 H 0.036 0.964 35 H 0.026 0.974 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.059 0.941 39 H 0.376 0.624 40 H 0.266 0.734 41 H 0.044 0.956 42 H 0.073 0.927 43 H 0.065 0.935 44 H 0.063 0.937 45 H 0.093 0.907 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.937 -3.374 -10.563 19.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.234 6.234 4 C 0.080 3.920 5 C -0.235 4.235 6 C -0.090 4.090 7 C -0.104 4.104 8 C -0.042 4.042 9 N -0.229 5.229 10 C -0.086 4.086 11 C -0.168 4.168 12 C 0.217 3.783 13 O -0.387 6.387 14 C -0.575 4.575 15 H 0.078 0.922 16 C -0.132 4.132 17 N -0.533 5.533 18 Si 0.726 3.274 19 H -0.204 1.204 20 H -0.212 1.212 21 H -0.199 1.199 22 C -0.076 4.076 23 C -0.021 4.021 24 C -0.178 4.178 25 C -0.176 4.176 26 H 0.095 0.905 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.140 0.860 32 H 0.138 0.862 33 H 0.096 0.904 34 H 0.054 0.946 35 H 0.044 0.956 36 H 0.079 0.921 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.226 0.774 40 H 0.076 0.924 41 H 0.063 0.937 42 H 0.091 0.909 43 H 0.084 0.916 44 H 0.082 0.918 45 H 0.112 0.888 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.590 -2.605 -10.772 19.951 hybrid contribution 1.653 -1.651 0.431 2.376 sum -14.936 -4.255 -10.341 18.658 Atomic orbital electron populations 1.21770 0.92940 1.02703 1.03448 1.22729 0.95649 0.82324 1.01333 1.86035 1.19431 1.28945 1.88994 1.18903 0.81846 0.94167 0.97128 1.21080 0.94248 0.97638 1.10538 1.20826 0.94131 0.96739 0.97287 1.19616 0.95518 0.92342 1.02939 1.21142 0.90652 0.99963 0.92490 1.64776 1.19318 1.32167 1.06639 1.22867 1.00004 0.90295 0.95453 1.22935 0.94746 1.01191 0.97935 1.19342 0.91185 0.82532 0.85211 1.86139 1.87054 1.43174 1.22365 1.21602 0.93203 1.47522 0.95211 0.92180 1.24997 0.98405 0.94094 0.95660 1.69742 1.35416 1.48273 0.99879 0.86504 0.85042 0.78109 0.77781 1.20450 1.21158 1.19892 1.23230 0.85875 0.99957 0.98529 1.19542 0.91575 0.95947 0.95025 1.20914 1.03136 0.91851 1.01896 1.20254 0.94611 0.94580 1.08120 0.90510 0.91524 0.91629 0.92239 0.92104 0.86013 0.86202 0.90366 0.94571 0.95564 0.92132 0.91629 0.92233 0.77446 0.92410 0.93742 0.90895 0.91594 0.91796 0.88833 0.85580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 10.28 37.16 0.38 -0.65 16 2 C 0.05 0.49 5.46 37.16 0.20 0.70 16 3 O -0.32 -4.02 10.14 -19.42 -0.20 -4.21 16 4 C 0.12 1.70 6.69 -39.22 -0.26 1.44 16 5 C -0.22 -2.81 9.04 -39.44 -0.36 -3.17 16 6 C -0.07 -0.99 9.46 -39.61 -0.37 -1.37 16 7 C -0.10 -1.56 4.94 -104.60 -0.52 -2.08 16 8 C 0.09 1.36 4.02 -4.97 -0.02 1.34 16 9 N -0.51 -9.73 4.59 -231.79 -1.06 -10.80 16 10 C 0.04 0.83 6.00 -2.75 -0.02 0.81 16 11 C -0.13 -3.02 5.26 -25.37 -0.13 -3.15 16 12 C 0.26 6.40 0.96 -89.82 -0.09 6.31 16 13 O -0.58 -15.30 13.09 -35.23 -0.46 -15.77 16 14 C -0.54 -14.33 8.15 -34.44 -0.28 -14.61 16 15 H 0.06 1.59 7.78 -52.49 -0.41 1.18 16 16 C 0.07 1.87 5.28 -17.82 -0.09 1.78 16 17 N -0.89 -23.97 11.02 55.43 0.61 -23.36 16 18 Si 0.90 20.63 29.54 -169.99 -5.02 15.60 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 21 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 22 C 0.05 1.10 5.69 -1.81 -0.01 1.09 16 23 C -0.02 -0.29 5.88 -104.65 -0.62 -0.91 16 24 C -0.12 -1.61 9.26 36.01 0.33 -1.28 16 25 C -0.16 -2.19 9.64 -39.43 -0.38 -2.57 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.48 7.66 -51.93 -0.40 0.08 16 30 H 0.06 0.52 7.66 -51.93 -0.40 0.12 16 31 H 0.12 1.30 6.30 -52.49 -0.33 0.97 16 32 H 0.12 1.53 8.03 -52.49 -0.42 1.11 16 33 H 0.08 1.16 7.25 -51.93 -0.38 0.78 16 34 H 0.04 0.56 7.67 -51.93 -0.40 0.16 16 35 H 0.03 0.48 7.57 -51.93 -0.39 0.09 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.06 1.62 7.99 -51.93 -0.41 1.21 16 38 H 0.06 1.45 7.84 -51.93 -0.41 1.04 16 39 H 0.38 10.06 7.48 45.56 0.34 10.40 16 40 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 41 H 0.04 0.92 7.92 -51.93 -0.41 0.51 16 42 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 43 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 45 H 0.09 1.44 6.34 -51.92 -0.33 1.11 16 46 H 0.13 1.58 8.06 -52.49 -0.42 1.15 16 LS Contribution 366.48 15.07 5.52 5.52 Total: -1.00 -28.55 366.48 -9.70 -38.25 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: -6.86 Total: 11.07 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -2.23 Total: -16.31 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: -0.45 Total: -34.16 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.66 Total: -19.98 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.55 -9.70 -38.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597158404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.667 kcal (2) G-P(sol) polarization free energy of solvation -28.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds