Wall clock time and date at job start Tue Mar 31 2020 09:18:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42898 * 109.47130 * 2 1 4 4 C 1.35897 * 117.00053 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.05886 * 0.02562 * 4 3 2 6 6 C 1.38118 * 119.94697 * 179.68565 * 5 4 3 7 7 C 1.38290 * 120.05348 * 0.56216 * 6 5 4 8 8 C 1.50699 * 119.94152 * 179.72696 * 7 6 5 9 9 N 1.46906 * 109.47317 * 259.72982 * 8 7 6 10 10 C 1.47897 * 110.99555 * 69.87469 * 9 8 7 11 11 C 1.54000 * 107.05672 * 145.84575 * 10 9 8 12 12 C 1.54598 * 105.22213 * 358.72428 * 11 10 9 13 13 O 1.42900 * 110.72206 * 96.45416 * 12 11 10 14 14 C 1.50709 * 110.72231 * 219.73162 * 12 11 10 15 15 H 1.07997 * 119.99484 * 118.54840 * 14 12 11 16 16 C 1.37869 * 119.99916 * 298.55075 * 14 12 11 17 17 N 1.31519 * 120.00697 * 359.97438 * 16 14 12 18 18 Si 1.86802 * 119.99863 * 180.02562 * 16 14 12 19 19 H 1.48506 * 109.47155 * 89.99908 * 18 16 14 20 20 H 1.48498 * 109.47364 * 210.00073 * 18 16 14 21 21 H 1.48505 * 109.46995 * 330.00007 * 18 16 14 22 22 C 1.48533 * 111.00245 * 187.27419 * 9 8 7 23 23 C 1.38240 * 120.11154 * 359.46477 * 7 6 5 24 24 C 1.50700 * 119.97296 * 180.27317 * 23 7 6 25 25 C 1.38166 * 120.05643 * 0.23732 * 23 7 6 26 26 H 1.09004 * 109.47371 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47051 * 299.99731 * 1 2 3 28 28 H 1.08997 * 109.47593 * 59.99891 * 1 2 3 29 29 H 1.09005 * 109.46864 * 240.00961 * 2 1 3 30 30 H 1.08995 * 109.47185 * 120.00440 * 2 1 3 31 31 H 1.08001 * 120.02527 * 359.95820 * 5 4 3 32 32 H 1.08002 * 119.97664 * 180.32185 * 6 5 4 33 33 H 1.09004 * 109.46704 * 139.73410 * 8 7 6 34 34 H 1.08991 * 109.47304 * 19.73150 * 8 7 6 35 35 H 1.09000 * 109.91881 * 26.49521 * 10 9 8 36 36 H 1.09002 * 110.08496 * 265.28456 * 10 9 8 37 37 H 1.09002 * 110.31026 * 117.69182 * 11 10 9 38 38 H 1.09000 * 110.30915 * 239.76211 * 11 10 9 39 39 H 0.96701 * 114.00035 * 61.44787 * 13 12 11 40 40 H 0.96995 * 120.00378 * 179.97438 * 17 16 14 41 41 H 1.09003 * 110.66452 * 318.71648 * 22 9 8 42 42 H 1.08998 * 110.66933 * 81.84247 * 22 9 8 43 43 H 1.08993 * 109.47705 * 89.99093 * 24 23 7 44 44 H 1.08998 * 109.47098 * 209.99462 * 24 23 7 45 45 H 1.09009 * 109.46819 * 329.98994 * 24 23 7 46 46 H 1.07996 * 120.02682 * 180.02562 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5688 0.6095 -0.0087 7 6 6.0961 1.8879 -0.0030 8 6 7.5901 2.0853 -0.0046 9 7 8.0456 2.3873 1.3590 10 6 7.9300 1.1988 2.2317 11 6 9.1036 1.2535 3.2273 12 6 9.9024 2.5204 2.8439 13 8 9.5199 3.6266 3.6636 14 6 11.3846 2.2671 2.9451 15 1 12.0080 2.3517 2.0673 16 6 11.9447 1.9275 4.1583 17 7 11.1856 1.8249 5.2274 18 14 13.7820 1.6143 4.2839 19 1 14.4806 2.8864 4.5987 20 1 14.0432 0.6263 5.3612 21 1 14.2827 1.0813 2.9914 22 6 9.4836 2.7593 1.3698 23 6 5.2551 2.9850 -0.0014 24 6 5.8331 4.3768 -0.0014 25 6 3.8850 2.8066 -0.0005 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 1.8933 -0.5137 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 3.7886 -0.5728 -0.0013 32 1 6.2280 -0.2460 -0.0148 33 1 7.8464 2.9138 -0.6650 34 1 8.0764 1.1758 -0.3570 35 1 7.9934 0.2905 1.6325 36 1 6.9835 1.2218 2.7719 37 1 8.7303 1.3361 4.2481 38 1 9.7287 0.3665 3.1243 39 1 9.6879 3.4941 4.6066 40 1 11.5796 1.5856 6.0808 41 1 10.0528 2.1145 0.7002 42 1 9.6120 3.8070 1.0980 43 1 5.9713 4.7128 -1.0290 44 1 5.1511 5.0534 0.5135 45 1 6.7950 4.3707 0.5114 46 1 3.2284 3.6641 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597158404.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:11 Heat of formation + Delta-G solvation = -83.458005 kcal Electronic energy + Delta-G solvation = -25327.938157 eV Core-core repulsion = 21795.625567 eV Total energy + Delta-G solvation = -3532.312590 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.27796 -40.10030 -38.77673 -36.43226 -34.14674 -33.59379 -33.16789 -32.10199 -30.19760 -29.70575 -28.11874 -26.74295 -25.39058 -24.41035 -22.88562 -22.07520 -21.39056 -20.93630 -18.96070 -18.75788 -17.40205 -17.03074 -16.88675 -16.81451 -16.50290 -16.03787 -15.57834 -15.25439 -14.87358 -14.57919 -14.44615 -14.28394 -14.06868 -13.93930 -13.76530 -13.38631 -13.30390 -13.16961 -12.95193 -12.82173 -12.81521 -12.52709 -12.48561 -12.46326 -12.24533 -12.13797 -11.91237 -11.70021 -11.54217 -11.48540 -11.03085 -10.57949 -10.07434 -9.68553 -9.26069 -8.96023 -8.19521 -6.35449 0.41732 0.46156 1.40869 1.43047 1.51937 2.27684 2.39047 2.71516 3.05271 3.35489 3.83158 3.84913 3.96766 4.02594 4.06240 4.12275 4.18874 4.23336 4.33145 4.38429 4.40923 4.45222 4.48902 4.69547 4.70204 4.78380 4.82622 4.88576 4.89794 4.94721 4.95221 5.09773 5.12922 5.19810 5.25388 5.29687 5.41815 5.47599 5.51570 5.59330 5.75372 5.81739 5.87349 5.96100 6.22246 6.32272 6.50193 6.71142 7.36477 7.50073 8.85752 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027886 B = 0.002952 C = 0.002841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.838319 B = 9481.734113 C = 9854.360526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.045 3.955 3 O -0.333 6.333 4 C 0.121 3.879 5 C -0.217 4.217 6 C -0.076 4.076 7 C -0.122 4.122 8 C 0.090 3.910 9 N -0.509 5.509 10 C 0.054 3.946 11 C -0.120 4.120 12 C 0.239 3.761 13 O -0.589 6.589 14 C -0.560 4.560 15 H 0.056 0.944 16 C 0.029 3.971 17 N -0.912 5.912 18 Si 0.959 3.041 19 H -0.277 1.277 20 H -0.282 1.282 21 H -0.269 1.269 22 C 0.060 3.940 23 C -0.029 4.029 24 C -0.117 4.117 25 C -0.169 4.169 26 H 0.100 0.900 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.145 0.855 32 H 0.131 0.869 33 H 0.088 0.912 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.060 0.940 37 H 0.043 0.957 38 H 0.043 0.957 39 H 0.370 0.630 40 H 0.268 0.732 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.084 0.916 44 H 0.070 0.930 45 H 0.070 0.930 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 -4.347 -11.742 20.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.030 4.030 3 O -0.247 6.247 4 C 0.075 3.925 5 C -0.235 4.235 6 C -0.094 4.094 7 C -0.123 4.123 8 C -0.038 4.038 9 N -0.233 5.233 10 C -0.074 4.074 11 C -0.159 4.159 12 C 0.199 3.801 13 O -0.396 6.396 14 C -0.598 4.598 15 H 0.074 0.926 16 C -0.172 4.172 17 N -0.551 5.551 18 Si 0.784 3.216 19 H -0.203 1.203 20 H -0.207 1.207 21 H -0.194 1.194 22 C -0.067 4.067 23 C -0.030 4.030 24 C -0.174 4.174 25 C -0.188 4.188 26 H 0.118 0.882 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.163 0.837 32 H 0.149 0.851 33 H 0.106 0.894 34 H 0.062 0.938 35 H 0.063 0.937 36 H 0.078 0.922 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.218 0.782 40 H 0.077 0.923 41 H 0.069 0.931 42 H 0.089 0.911 43 H 0.102 0.898 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -17.403 -3.582 -11.967 21.422 hybrid contribution 1.802 -1.364 0.791 2.394 sum -15.601 -4.946 -11.177 19.819 Atomic orbital electron populations 1.21801 0.91366 1.04166 1.03186 1.23047 0.96959 0.80887 1.02110 1.86036 1.18749 1.31212 1.88728 1.19072 0.82596 0.94311 0.96496 1.21318 0.93840 0.98643 1.09733 1.21013 0.94831 0.96675 0.96904 1.19602 0.94852 0.93134 1.04679 1.21156 0.91447 1.00699 0.90478 1.64726 1.17696 1.32082 1.08784 1.22699 0.98203 0.91484 0.95005 1.22729 0.95594 0.99882 0.97692 1.19621 0.90867 0.82676 0.86885 1.86134 1.87149 1.44226 1.22090 1.21881 0.94396 1.48132 0.95407 0.92579 1.25701 1.02309 0.93817 0.95373 1.69836 1.36825 1.48334 1.00136 0.85555 0.80273 0.77899 0.77842 1.20315 1.20722 1.19406 1.23060 0.87343 1.00051 0.96268 1.19702 0.91934 0.96306 0.95055 1.20874 1.01950 0.91699 1.02863 1.20426 0.94615 0.95361 1.08401 0.88174 0.92014 0.91665 0.91061 0.91631 0.83731 0.85082 0.89382 0.93798 0.93688 0.92194 0.93860 0.93770 0.78182 0.92316 0.93125 0.91140 0.89760 0.91060 0.91069 0.84696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 10.28 71.98 0.74 -0.96 16 2 C 0.04 0.70 5.46 71.98 0.39 1.10 16 3 O -0.33 -7.81 10.14 -92.39 -0.94 -8.75 16 4 C 0.12 3.11 6.69 22.51 0.15 3.26 16 5 C -0.22 -5.17 9.04 22.36 0.20 -4.97 16 6 C -0.08 -1.96 9.46 22.25 0.21 -1.75 16 7 C -0.12 -3.50 4.94 -19.85 -0.10 -3.60 16 8 C 0.09 2.72 4.02 85.56 0.34 3.07 16 9 N -0.51 -19.23 4.59 -887.23 -4.07 -23.30 16 10 C 0.05 2.11 6.00 86.45 0.52 2.63 16 11 C -0.12 -5.68 5.26 31.48 0.17 -5.51 16 12 C 0.24 12.03 0.96 -10.28 -0.01 12.02 16 13 O -0.59 -31.76 13.09 -148.98 -1.95 -33.71 16 14 C -0.56 -30.13 8.15 25.60 0.21 -29.92 16 15 H 0.06 2.98 7.78 -2.91 -0.02 2.96 16 16 C 0.03 1.52 5.28 84.65 0.45 1.96 16 17 N -0.91 -49.50 11.02 21.45 0.24 -49.27 16 18 Si 0.96 42.26 29.54 68.60 2.03 44.29 16 19 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 20 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 21 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 22 C 0.06 2.57 5.69 86.70 0.49 3.06 16 23 C -0.03 -0.82 5.88 -19.88 -0.12 -0.94 16 24 C -0.12 -2.99 9.26 71.24 0.66 -2.33 16 25 C -0.17 -4.52 9.64 22.37 0.22 -4.31 16 26 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.07 0.96 7.66 -2.38 -0.02 0.94 16 30 H 0.07 0.97 7.66 -2.39 -0.02 0.95 16 31 H 0.15 2.67 6.30 -2.91 -0.02 2.66 16 32 H 0.13 3.03 8.03 -2.91 -0.02 3.01 16 33 H 0.09 2.48 7.25 -2.39 -0.02 2.46 16 34 H 0.04 1.27 7.67 -2.39 -0.02 1.25 16 35 H 0.04 1.59 7.57 -2.39 -0.02 1.57 16 36 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 37 H 0.04 2.19 7.99 -2.39 -0.02 2.17 16 38 H 0.04 2.17 7.84 -2.39 -0.02 2.15 16 39 H 0.37 20.41 7.48 -74.06 -0.55 19.85 16 40 H 0.27 13.85 8.31 -92.71 -0.77 13.08 16 41 H 0.05 2.07 7.92 -2.39 -0.02 2.05 16 42 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.07 1.67 8.08 -2.39 -0.02 1.65 16 45 H 0.07 2.15 6.34 -2.38 -0.02 2.14 16 46 H 0.14 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -60.56 366.48 0.23 -60.33 By element: Atomic # 1 Polarization: 37.19 SS G_CDS: 0.41 Total: 37.60 kcal Atomic # 6 Polarization: -31.72 SS G_CDS: 4.52 Total: -27.19 kcal Atomic # 7 Polarization: -68.73 SS G_CDS: -3.84 Total: -72.57 kcal Atomic # 8 Polarization: -39.57 SS G_CDS: -2.89 Total: -42.45 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -60.56 0.23 -60.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597158404.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.131 kcal (2) G-P(sol) polarization free energy of solvation -60.562 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.327 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds