Wall clock time and date at job start Tue Mar 31 2020 09:18:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42898 * 109.47066 * 2 1 4 4 C 1.35903 * 116.99841 * 180.02562 * 3 2 1 5 5 C 1.38750 * 120.05789 * 359.72248 * 4 3 2 6 6 C 1.38126 * 119.94093 * 179.69608 * 5 4 3 7 7 C 1.38277 * 120.05835 * 0.60560 * 6 5 4 8 8 C 1.50699 * 119.94811 * 179.69530 * 7 6 5 9 9 N 1.46900 * 109.47393 * 266.47309 * 8 7 6 10 10 C 1.47906 * 110.99772 * 75.91516 * 9 8 7 11 11 C 1.53997 * 107.05492 * 214.15604 * 10 9 8 12 12 C 1.54591 * 105.14128 * 1.22811 * 11 10 9 13 13 O 1.42900 * 110.72407 * 263.41733 * 12 11 10 14 14 C 1.50701 * 110.72475 * 140.31463 * 12 11 10 15 15 H 1.07999 * 120.00122 * 359.35657 * 14 12 11 16 16 C 1.37876 * 120.00229 * 179.35770 * 14 12 11 17 17 N 1.31511 * 120.00180 * 186.97686 * 16 14 12 18 18 Si 1.86801 * 119.99715 * 6.97403 * 16 14 12 19 19 H 1.48500 * 109.46901 * 93.27545 * 18 16 14 20 20 H 1.48505 * 109.46910 * 213.26812 * 18 16 14 21 21 H 1.48491 * 109.47352 * 333.27295 * 18 16 14 22 22 C 1.48537 * 110.99975 * 318.52141 * 9 8 7 23 23 C 1.38250 * 120.11436 * 359.67356 * 7 6 5 24 24 C 1.50702 * 119.97719 * 180.02562 * 23 7 6 25 25 C 1.38169 * 120.04979 * 0.02562 * 23 7 6 26 26 H 1.08997 * 109.47242 * 299.99641 * 1 2 3 27 27 H 1.09000 * 109.47694 * 59.99835 * 1 2 3 28 28 H 1.09000 * 109.47048 * 179.97438 * 1 2 3 29 29 H 1.09007 * 109.47256 * 240.00369 * 2 1 3 30 30 H 1.09000 * 109.47694 * 120.00165 * 2 1 3 31 31 H 1.08002 * 120.02605 * 359.97438 * 5 4 3 32 32 H 1.07999 * 119.96852 * 180.29999 * 6 5 4 33 33 H 1.09003 * 109.47109 * 26.47114 * 8 7 6 34 34 H 1.09001 * 109.47541 * 146.46824 * 8 7 6 35 35 H 1.09000 * 109.91760 * 333.51060 * 10 9 8 36 36 H 1.09001 * 109.91291 * 94.80443 * 10 9 8 37 37 H 1.09006 * 110.30663 * 120.14393 * 11 10 9 38 38 H 1.08999 * 110.30958 * 242.21232 * 11 10 9 39 39 H 0.96704 * 114.00344 * 298.54873 * 13 12 11 40 40 H 0.97002 * 119.99973 * 180.02562 * 17 16 14 41 41 H 1.09001 * 110.66434 * 278.15726 * 22 9 8 42 42 H 1.09004 * 110.66651 * 41.28423 * 22 9 8 43 43 H 1.08999 * 109.47089 * 264.50517 * 24 23 7 44 44 H 1.09003 * 109.46647 * 24.49864 * 24 23 7 45 45 H 1.09000 * 109.46689 * 144.49939 * 24 23 7 46 46 H 1.07998 * 120.02695 * 179.97438 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5253 -0.0005 5 6 4.1999 0.4258 0.0048 6 6 5.5689 0.6095 -0.0022 7 6 6.0962 1.8878 -0.0017 8 6 7.5902 2.0853 -0.0023 9 7 8.0652 2.2332 1.3799 10 6 8.0969 0.9265 2.0721 11 6 7.7408 1.1881 3.5473 12 6 7.4772 2.7088 3.6355 13 8 8.6441 3.3990 4.0871 14 6 6.3068 2.9955 4.5406 15 1 5.7766 2.1813 5.0121 16 6 5.9128 4.2973 4.7667 17 7 4.9833 4.5573 5.6599 18 14 6.6995 5.6917 3.8042 19 1 5.8794 5.9877 2.6021 20 1 6.7770 6.9023 4.6608 21 1 8.0672 5.2937 3.3847 22 6 7.1434 3.0882 2.1709 23 6 5.2551 2.9850 -0.0011 24 6 5.8331 4.3768 -0.0012 25 6 3.8850 2.8066 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.7886 -0.5728 0.0097 32 1 6.2280 -0.2460 -0.0029 33 1 8.0707 1.2212 -0.4611 34 1 7.8379 2.9825 -0.5696 35 1 7.3647 0.2527 1.6271 36 1 9.0947 0.4934 2.0021 37 1 6.8451 0.6321 3.8246 38 1 8.5736 0.9089 4.1927 39 1 8.9377 3.1387 4.9709 40 1 4.7058 5.4732 5.8186 41 1 7.3478 4.1436 1.9907 42 1 6.1050 2.8513 1.9392 43 1 5.8821 4.7500 1.0217 44 1 6.8359 4.3537 -0.4279 45 1 5.1995 5.0333 -0.5976 46 1 3.2284 3.6640 0.0004 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597158406.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:19 Heat of formation + Delta-G solvation = -40.878430 kcal Electronic energy + Delta-G solvation = -26764.114721 eV Core-core repulsion = 23233.648520 eV Total energy + Delta-G solvation = -3530.466201 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.45001 -39.03363 -37.33119 -34.87917 -32.65166 -32.28046 -32.11069 -31.02296 -28.84060 -28.25790 -27.01850 -25.23580 -23.82625 -23.56737 -21.81621 -20.99301 -19.63514 -19.47654 -17.76516 -17.32783 -16.16848 -16.11128 -15.78531 -15.11727 -15.01026 -14.54040 -14.30049 -14.09462 -13.55939 -13.44542 -13.26900 -13.12121 -12.92588 -12.71473 -12.52276 -12.29293 -12.14655 -11.82004 -11.67228 -11.56028 -11.43536 -11.24293 -11.10858 -10.90729 -10.62107 -10.49980 -10.43083 -10.35454 -10.03698 -9.80244 -8.84739 -8.60212 -8.52229 -8.23447 -7.89028 -7.73070 -6.12763 -4.21871 1.52802 1.61430 3.23700 3.33293 3.46904 3.72293 3.90495 4.51672 4.69483 4.79326 4.80892 4.96847 5.00419 5.10099 5.15418 5.19281 5.30045 5.33254 5.40678 5.46075 5.56818 5.62379 5.65221 5.70612 5.81882 5.85757 5.88965 5.93967 6.03636 6.12201 6.21157 6.29235 6.35928 6.40592 6.51361 6.55341 6.63263 6.75011 6.83970 6.91691 6.97428 7.21145 7.42846 7.55581 7.63141 7.72927 8.30395 8.85059 9.09786 9.53305 10.98066 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.005637 C = 0.004990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.585586 B = 4965.627050 C = 5610.251292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.133 3.867 5 C -0.215 4.215 6 C -0.068 4.068 7 C -0.151 4.151 8 C 0.082 3.918 9 N -0.506 5.506 10 C 0.036 3.964 11 C -0.145 4.145 12 C 0.222 3.778 13 O -0.566 6.566 14 C -0.549 4.549 15 H 0.073 0.927 16 C 0.088 3.912 17 N -0.891 5.891 18 Si 0.859 3.141 19 H -0.283 1.283 20 H -0.298 1.298 21 H -0.214 1.214 22 C 0.037 3.963 23 C -0.023 4.023 24 C -0.137 4.137 25 C -0.151 4.151 26 H 0.067 0.933 27 H 0.064 0.936 28 H 0.076 0.924 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.039 0.961 36 H 0.066 0.934 37 H 0.065 0.935 38 H 0.060 0.940 39 H 0.357 0.643 40 H 0.264 0.736 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.088 0.912 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.082 -8.402 -13.527 16.059 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.231 6.231 4 C 0.088 3.912 5 C -0.234 4.234 6 C -0.086 4.086 7 C -0.153 4.153 8 C -0.046 4.046 9 N -0.228 5.228 10 C -0.091 4.091 11 C -0.183 4.183 12 C 0.181 3.819 13 O -0.371 6.371 14 C -0.587 4.587 15 H 0.091 0.909 16 C -0.116 4.116 17 N -0.527 5.527 18 Si 0.687 3.313 19 H -0.210 1.210 20 H -0.226 1.226 21 H -0.136 1.136 22 C -0.090 4.090 23 C -0.023 4.023 24 C -0.193 4.193 25 C -0.169 4.169 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.095 0.905 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.141 0.859 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.101 0.899 35 H 0.057 0.943 36 H 0.084 0.916 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.203 0.797 40 H 0.074 0.926 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.084 0.916 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -1.838 -7.630 -14.067 16.108 hybrid contribution -0.712 -0.239 0.289 0.805 sum -2.550 -7.869 -13.779 16.071 Atomic orbital electron populations 1.21768 0.92924 1.02639 1.03538 1.22736 0.95719 0.82317 1.01260 1.86055 1.19323 1.28963 1.88792 1.18876 0.81953 0.94071 0.96307 1.21090 0.94308 0.97642 1.10371 1.20747 0.94112 0.96357 0.97417 1.20305 0.97557 0.92749 1.04719 1.21390 0.88218 1.02138 0.92850 1.65213 1.46335 1.10688 1.00531 1.22835 0.99774 0.91388 0.95148 1.23003 1.00589 1.00221 0.94507 1.19860 0.84672 0.86324 0.90998 1.86573 1.47348 1.67006 1.36220 1.21373 1.14256 0.94015 1.29025 0.90876 1.24951 0.93759 0.99071 0.93868 1.69956 1.30314 1.20399 1.32051 0.87336 0.83441 0.80707 0.79825 1.21002 1.22575 1.13648 1.24054 0.95120 0.96975 0.92817 1.19503 0.92054 0.95576 0.95209 1.21334 1.01227 0.92584 1.04110 1.20231 0.94561 0.94867 1.07272 0.91367 0.91681 0.90545 0.92331 0.92005 0.85932 0.86158 0.90883 0.89920 0.94282 0.91595 0.91590 0.92168 0.79673 0.92618 0.90877 0.90927 0.89361 0.90693 0.91617 0.85390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 10.28 37.16 0.38 -0.96 16 2 C 0.05 0.61 5.46 37.16 0.20 0.81 16 3 O -0.32 -4.82 10.14 -19.44 -0.20 -5.01 16 4 C 0.13 2.17 6.69 -39.22 -0.26 1.91 16 5 C -0.22 -3.18 9.04 -39.43 -0.36 -3.54 16 6 C -0.07 -1.01 8.48 -39.61 -0.34 -1.35 16 7 C -0.15 -2.46 3.89 -104.60 -0.41 -2.87 16 8 C 0.08 1.28 5.37 -4.98 -0.03 1.26 16 9 N -0.51 -9.54 5.54 -231.88 -1.28 -10.82 16 10 C 0.04 0.65 6.44 -2.75 -0.02 0.63 16 11 C -0.14 -2.93 6.25 -25.38 -0.16 -3.09 16 12 C 0.22 5.22 0.78 -89.92 -0.07 5.15 16 13 O -0.57 -13.20 10.09 -35.23 -0.36 -13.56 16 14 C -0.55 -15.27 8.81 -34.44 -0.30 -15.58 16 15 H 0.07 2.22 7.79 -52.49 -0.41 1.81 16 16 C 0.09 2.53 5.46 -17.82 -0.10 2.44 16 17 N -0.89 -27.20 13.96 55.43 0.77 -26.43 16 18 Si 0.86 21.69 23.95 -169.99 -4.07 17.62 16 19 H -0.28 -6.82 5.89 56.52 0.33 -6.49 16 20 H -0.30 -7.68 7.11 56.52 0.40 -7.28 16 21 H -0.21 -5.34 4.91 56.52 0.28 -5.06 16 22 C 0.04 0.81 2.52 -1.90 0.00 0.80 16 23 C -0.02 -0.38 4.23 -104.64 -0.44 -0.83 16 24 C -0.14 -2.23 8.30 36.01 0.30 -1.93 16 25 C -0.15 -2.58 9.66 -39.43 -0.38 -2.96 16 26 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 30 H 0.06 0.68 7.65 -51.93 -0.40 0.28 16 31 H 0.12 1.49 6.30 -52.49 -0.33 1.16 16 32 H 0.12 1.54 7.35 -52.49 -0.39 1.16 16 33 H 0.07 0.99 7.92 -51.93 -0.41 0.58 16 34 H 0.08 1.22 6.05 -51.93 -0.31 0.91 16 35 H 0.04 0.64 5.56 -51.93 -0.29 0.35 16 36 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.07 1.38 7.67 -51.93 -0.40 0.98 16 38 H 0.06 1.12 8.08 -51.93 -0.42 0.70 16 39 H 0.36 7.31 9.09 45.56 0.41 7.72 16 40 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 41 H 0.07 1.68 3.55 -51.93 -0.18 1.50 16 42 H 0.07 1.67 4.45 -51.93 -0.23 1.44 16 43 H 0.09 1.71 4.26 -51.93 -0.22 1.49 16 44 H 0.07 1.11 5.80 -51.93 -0.30 0.81 16 45 H 0.06 0.92 8.12 -51.93 -0.42 0.50 16 46 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 LS Contribution 339.48 15.07 5.12 5.12 Total: -1.00 -32.33 339.48 -8.14 -40.46 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -6.14 Total: 12.73 kcal Atomic # 6 Polarization: -18.13 SS G_CDS: -1.98 Total: -20.11 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: -0.51 Total: -37.25 kcal Atomic # 8 Polarization: -18.02 SS G_CDS: -0.55 Total: -18.57 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.07 Total: 17.62 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.33 -8.14 -40.46 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597158406.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.415 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds