Wall clock time and date at job start Tue Mar 31 2020 09:45:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47193 * 2 1 4 4 C 1.35994 * 117.00165 * 180.02562 * 3 2 1 5 5 C 1.38572 * 120.07206 * 359.72133 * 4 3 2 6 6 C 1.38238 * 119.99411 * 180.29924 * 5 4 3 7 7 C 1.50705 * 119.92022 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47312 * 269.97863 * 7 6 5 9 9 C 1.46843 * 111.00070 * 45.79105 * 8 7 6 10 10 C 1.53035 * 109.52495 * 185.83699 * 9 8 7 11 11 C 1.53117 * 109.28268 * 300.82584 * 10 9 8 12 12 C 1.53121 * 109.16252 * 57.64987 * 11 10 9 13 13 H 1.08996 * 109.53559 * 62.30714 * 12 11 10 14 14 C 1.50697 * 109.50339 * 182.41282 * 12 11 10 15 15 H 1.07998 * 120.00318 * 119.80797 * 14 12 11 16 16 C 1.37881 * 119.99518 * 299.79684 * 14 12 11 17 17 N 1.31513 * 120.00350 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99512 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47208 * 90.00640 * 18 16 14 20 20 H 1.48507 * 109.46988 * 210.00170 * 18 16 14 21 21 H 1.48496 * 109.47668 * 330.00330 * 18 16 14 22 22 C 1.46854 * 110.99944 * 170.00321 * 8 7 6 23 23 C 1.38245 * 120.15318 * 359.95911 * 6 5 4 24 24 C 1.38247 * 120.14478 * 0.04167 * 23 6 5 25 25 C 1.38558 * 119.99917 * 359.97438 * 24 23 6 26 26 O 1.35996 * 120.07441 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.46978 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.46919 * 60.00222 * 1 2 3 29 29 H 1.08999 * 109.46814 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47405 * 240.00016 * 2 1 3 31 31 H 1.09002 * 109.47348 * 119.99958 * 2 1 3 32 32 H 1.07998 * 120.00041 * 0.27693 * 5 4 3 33 33 H 1.08998 * 109.47188 * 29.98296 * 7 6 5 34 34 H 1.09007 * 109.46581 * 149.97638 * 7 6 5 35 35 H 1.08994 * 109.46336 * 305.85752 * 9 8 7 36 36 H 1.09001 * 109.46075 * 65.82782 * 9 8 7 37 37 H 1.08997 * 109.50439 * 180.87942 * 10 9 8 38 38 H 1.09002 * 109.50439 * 60.76504 * 10 9 8 39 39 H 1.09010 * 109.51832 * 297.74884 * 11 10 9 40 40 H 1.08996 * 109.58143 * 177.58783 * 11 10 9 41 41 H 0.96998 * 119.99879 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.45692 * 294.17446 * 22 8 7 43 43 H 1.09001 * 109.46268 * 54.14211 * 22 8 7 44 44 H 1.08002 * 119.92791 * 180.02562 * 23 6 5 45 45 H 1.07996 * 120.00046 * 179.97438 * 24 23 6 46 46 H 0.96703 * 113.99732 * 269.98125 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.2001 0.4277 0.0048 6 6 5.5703 0.6107 0.0105 7 6 6.4883 -0.5844 0.0168 8 7 6.7809 -0.9698 1.4038 9 6 5.5562 -0.9911 2.2136 10 6 5.9157 -1.2527 3.6779 11 6 6.6457 -2.5942 3.7875 12 6 7.8911 -2.5629 2.8973 13 1 8.5706 -1.7863 3.2484 14 6 8.5834 -3.9003 2.9532 15 1 8.7134 -4.4792 2.0508 16 6 9.0509 -4.3847 4.1565 17 7 8.8923 -3.6798 5.2554 18 14 9.9096 -6.0422 4.2257 19 1 11.3679 -5.8532 4.0189 20 1 9.6746 -6.6663 5.5526 21 1 9.3689 -6.9247 3.1609 22 6 7.4743 -2.2633 1.4555 23 6 6.1003 1.8875 0.0100 24 6 5.2624 2.9871 0.0048 25 6 3.8881 2.8108 -0.0006 26 8 3.0624 3.8913 -0.0064 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7886 -0.5708 0.0048 33 1 6.0060 -1.4158 -0.4973 34 1 7.4176 -0.3315 -0.4938 35 1 5.0490 -0.0299 2.1303 36 1 4.8972 -1.7817 1.8547 37 1 5.0052 -1.2840 4.2763 38 1 6.5636 -0.4552 4.0417 39 1 5.9842 -3.3966 3.4603 40 1 6.9419 -2.7655 4.8223 41 1 9.2215 -4.0205 6.1018 42 1 6.8062 -3.0478 1.1001 43 1 8.3602 -2.2261 0.8215 44 1 7.1714 2.0263 0.0141 45 1 5.6790 3.9835 0.0048 46 1 2.8197 4.2055 0.8754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:07 Heat of formation + Delta-G solvation = -62.872177 kcal Electronic energy + Delta-G solvation = -25472.728187 eV Core-core repulsion = 21941.308265 eV Total energy + Delta-G solvation = -3531.419922 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.60867 -38.58321 -37.91587 -36.57396 -33.79574 -32.16718 -31.82703 -30.51229 -29.70368 -29.20302 -25.75666 -24.92778 -24.08564 -22.40044 -21.91932 -21.59536 -20.70217 -18.72582 -18.53290 -17.44247 -16.44389 -16.37747 -16.28245 -15.45895 -15.21111 -14.77360 -14.44472 -14.19081 -14.03333 -13.62193 -13.43007 -13.21555 -13.03867 -12.84408 -12.55182 -12.34427 -12.27666 -11.86032 -11.74748 -11.66373 -11.35322 -11.14546 -10.96386 -10.89101 -10.69132 -10.64468 -10.54967 -10.11929 -9.84848 -9.47952 -9.06710 -8.79570 -8.70443 -8.30553 -8.14789 -7.66295 -5.98207 -4.04514 1.11960 1.34850 3.00946 3.30050 3.36878 3.39474 3.51176 4.14294 4.40383 4.59394 4.68188 4.69545 4.79658 4.87193 4.99739 5.07565 5.29128 5.31834 5.32760 5.53668 5.54110 5.61355 5.65202 5.73702 5.77080 5.84075 5.94301 6.05575 6.12448 6.23767 6.25695 6.37725 6.49317 6.59474 6.64569 6.71853 6.73812 6.95111 7.12268 7.20611 7.37854 7.63527 7.65754 7.73506 7.78631 8.07327 8.16569 8.46941 8.99543 9.59811 11.07768 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.003203 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.643580 B = 8739.387857 C = 9314.335061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.309 6.309 4 C 0.104 3.896 5 C -0.189 4.189 6 C -0.038 4.038 7 C 0.089 3.911 8 N -0.530 5.530 9 C 0.060 3.940 10 C -0.117 4.117 11 C -0.110 4.110 12 C 0.056 3.944 13 H 0.035 0.965 14 C -0.515 4.515 15 H 0.053 0.947 16 C 0.063 3.937 17 N -0.888 5.888 18 Si 0.890 3.110 19 H -0.281 1.281 20 H -0.287 1.287 21 H -0.275 1.275 22 C 0.067 3.933 23 C -0.121 4.121 24 C -0.107 4.107 25 C 0.065 3.935 26 O -0.489 6.489 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.128 0.872 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.018 0.982 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.090 0.910 41 H 0.259 0.741 42 H 0.019 0.981 43 H 0.060 0.940 44 H 0.132 0.868 45 H 0.134 0.866 46 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.966 10.739 -9.520 19.341 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.024 4.024 3 O -0.223 6.223 4 C 0.058 3.942 5 C -0.208 4.208 6 C -0.038 4.038 7 C -0.039 4.039 8 N -0.254 5.254 9 C -0.068 4.068 10 C -0.155 4.155 11 C -0.148 4.148 12 C 0.037 3.963 13 H 0.053 0.947 14 C -0.554 4.554 15 H 0.071 0.929 16 C -0.138 4.138 17 N -0.527 5.527 18 Si 0.718 3.282 19 H -0.207 1.207 20 H -0.213 1.213 21 H -0.200 1.200 22 C -0.060 4.060 23 C -0.140 4.140 24 C -0.125 4.125 25 C 0.019 3.981 26 O -0.298 6.298 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.146 0.854 33 H 0.055 0.945 34 H 0.101 0.899 35 H 0.081 0.919 36 H 0.037 0.963 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.109 0.891 41 H 0.069 0.931 42 H 0.037 0.963 43 H 0.079 0.921 44 H 0.150 0.850 45 H 0.152 0.848 46 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -12.733 11.144 -9.743 19.526 hybrid contribution -0.077 -1.779 0.288 1.803 sum -12.810 9.365 -9.456 18.472 Atomic orbital electron populations 1.21755 0.92683 1.02848 1.03421 1.22814 0.95911 0.82100 1.01580 1.86116 1.18448 1.29038 1.88683 1.19336 0.82751 0.93526 0.98572 1.21096 0.93664 0.97809 1.08224 1.19710 0.92799 0.95338 0.95984 1.21140 0.97549 0.93286 0.91910 1.62189 1.23256 1.32661 1.07326 1.22145 0.90666 0.98983 0.94975 1.21677 0.99352 1.00834 0.93642 1.21652 0.96509 0.92150 1.04518 1.18658 0.93361 0.96482 0.87818 0.94697 1.21143 1.36872 1.03638 0.93748 0.92855 1.24934 0.95912 0.97216 0.95767 1.69892 1.46390 1.37676 0.98700 0.86631 0.79996 0.84292 0.77264 1.20692 1.21284 1.20038 1.22353 0.96132 0.85821 1.01646 1.20871 1.00230 0.90983 1.01904 1.21227 0.91379 0.99885 1.00021 1.17710 0.88830 0.83792 1.07742 1.84879 1.66762 1.44944 1.33202 0.91529 0.91591 0.90349 0.92112 0.91863 0.85377 0.94531 0.89867 0.91869 0.96339 0.93710 0.92096 0.95269 0.89126 0.93055 0.96267 0.92125 0.85010 0.84805 0.76215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.76 16 2 C 0.05 0.50 5.46 37.16 0.20 0.71 16 3 O -0.31 -3.92 9.92 -34.22 -0.34 -4.26 16 4 C 0.10 1.38 6.70 -39.12 -0.26 1.12 16 5 C -0.19 -2.48 6.78 -39.46 -0.27 -2.75 16 6 C -0.04 -0.52 4.12 -104.62 -0.43 -0.95 16 7 C 0.09 1.31 5.43 -4.98 -0.03 1.29 16 8 N -0.53 -9.61 4.80 -236.11 -1.13 -10.74 16 9 C 0.06 1.06 4.57 -3.84 -0.02 1.04 16 10 C -0.12 -2.31 6.09 -26.65 -0.16 -2.47 16 11 C -0.11 -2.60 5.03 -26.61 -0.13 -2.73 16 12 C 0.06 1.38 2.26 -91.69 -0.21 1.17 16 13 H 0.03 0.96 8.14 -51.93 -0.42 0.54 16 14 C -0.52 -13.99 8.56 -34.44 -0.29 -14.28 16 15 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 16 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 17 N -0.89 -25.18 11.36 55.43 0.63 -24.55 16 18 Si 0.89 21.10 29.54 -169.99 -5.02 16.07 16 19 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 20 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.07 1.40 4.65 -3.83 -0.02 1.38 16 23 C -0.12 -1.52 9.69 -39.58 -0.38 -1.91 16 24 C -0.11 -1.26 9.98 -39.46 -0.39 -1.65 16 25 C 0.06 0.83 6.72 -39.12 -0.26 0.56 16 26 O -0.49 -5.70 13.29 -34.23 -0.45 -6.16 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.56 7.67 -51.93 -0.40 0.16 16 31 H 0.06 0.62 7.66 -51.93 -0.40 0.22 16 32 H 0.13 1.59 6.30 -52.49 -0.33 1.26 16 33 H 0.04 0.53 8.02 -51.93 -0.42 0.11 16 34 H 0.08 1.15 8.08 -51.92 -0.42 0.73 16 35 H 0.06 1.04 5.64 -51.93 -0.29 0.75 16 36 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.03 0.68 8.14 -51.92 -0.42 0.26 16 40 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 41 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 42 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 44 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 45 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 46 H 0.38 2.79 9.06 45.56 0.41 3.20 16 LS Contribution 364.03 15.07 5.49 5.49 Total: -1.00 -30.31 364.03 -9.98 -40.29 By element: Atomic # 1 Polarization: 9.23 SS G_CDS: -6.78 Total: 2.45 kcal Atomic # 6 Polarization: -16.22 SS G_CDS: -2.37 Total: -18.59 kcal Atomic # 7 Polarization: -34.79 SS G_CDS: -0.50 Total: -35.29 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.79 Total: -10.42 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -30.31 -9.98 -40.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.579 kcal (2) G-P(sol) polarization free energy of solvation -30.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds