Wall clock time and date at job start Tue Mar 31 2020 09:45:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 O 1.42907 * 109.47193 * 2 1 4 4 C 1.35994 * 117.00165 * 180.02562 * 3 2 1 5 5 C 1.38572 * 120.07206 * 359.72133 * 4 3 2 6 6 C 1.38238 * 119.99411 * 180.29924 * 5 4 3 7 7 C 1.50705 * 119.92022 * 179.97438 * 6 5 4 8 8 N 1.46895 * 109.47312 * 269.97863 * 7 6 5 9 9 C 1.46843 * 111.00070 * 45.79105 * 8 7 6 10 10 C 1.53035 * 109.52495 * 185.83699 * 9 8 7 11 11 C 1.53117 * 109.28268 * 300.82584 * 10 9 8 12 12 C 1.53121 * 109.16252 * 57.64987 * 11 10 9 13 13 H 1.08996 * 109.53559 * 62.30714 * 12 11 10 14 14 C 1.50697 * 109.50339 * 182.41282 * 12 11 10 15 15 H 1.07998 * 120.00318 * 119.80797 * 14 12 11 16 16 C 1.37881 * 119.99518 * 299.79684 * 14 12 11 17 17 N 1.31513 * 120.00350 * 0.02562 * 16 14 12 18 18 Si 1.86801 * 119.99512 * 180.02562 * 16 14 12 19 19 H 1.48503 * 109.47208 * 90.00640 * 18 16 14 20 20 H 1.48507 * 109.46988 * 210.00170 * 18 16 14 21 21 H 1.48496 * 109.47668 * 330.00330 * 18 16 14 22 22 C 1.46854 * 110.99944 * 170.00321 * 8 7 6 23 23 C 1.38245 * 120.15318 * 359.95911 * 6 5 4 24 24 C 1.38247 * 120.14478 * 0.04167 * 23 6 5 25 25 C 1.38558 * 119.99917 * 359.97438 * 24 23 6 26 26 O 1.35996 * 120.07441 * 180.02562 * 25 24 23 27 27 H 1.08994 * 109.46978 * 299.99806 * 1 2 3 28 28 H 1.08998 * 109.46919 * 60.00222 * 1 2 3 29 29 H 1.08999 * 109.46814 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47405 * 240.00016 * 2 1 3 31 31 H 1.09002 * 109.47348 * 119.99958 * 2 1 3 32 32 H 1.07998 * 120.00041 * 0.27693 * 5 4 3 33 33 H 1.08998 * 109.47188 * 29.98296 * 7 6 5 34 34 H 1.09007 * 109.46581 * 149.97638 * 7 6 5 35 35 H 1.08994 * 109.46336 * 305.85752 * 9 8 7 36 36 H 1.09001 * 109.46075 * 65.82782 * 9 8 7 37 37 H 1.08997 * 109.50439 * 180.87942 * 10 9 8 38 38 H 1.09002 * 109.50439 * 60.76504 * 10 9 8 39 39 H 1.09010 * 109.51832 * 297.74884 * 11 10 9 40 40 H 1.08996 * 109.58143 * 177.58783 * 11 10 9 41 41 H 0.96998 * 119.99879 * 180.02562 * 17 16 14 42 42 H 1.08995 * 109.45692 * 294.17446 * 22 8 7 43 43 H 1.09001 * 109.46268 * 54.14211 * 22 8 7 44 44 H 1.08002 * 119.92791 * 180.02562 * 23 6 5 45 45 H 1.07996 * 120.00046 * 179.97438 * 24 23 6 46 46 H 0.96703 * 113.99732 * 269.98125 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3546 1.5255 -0.0005 5 6 4.2001 0.4277 0.0048 6 6 5.5703 0.6107 0.0105 7 6 6.4883 -0.5844 0.0168 8 7 6.7809 -0.9698 1.4038 9 6 5.5562 -0.9911 2.2136 10 6 5.9157 -1.2527 3.6779 11 6 6.6457 -2.5942 3.7875 12 6 7.8911 -2.5629 2.8973 13 1 8.5706 -1.7863 3.2484 14 6 8.5834 -3.9003 2.9532 15 1 8.7134 -4.4792 2.0508 16 6 9.0509 -4.3847 4.1565 17 7 8.8923 -3.6798 5.2554 18 14 9.9096 -6.0422 4.2257 19 1 11.3679 -5.8532 4.0189 20 1 9.6746 -6.6663 5.5526 21 1 9.3689 -6.9247 3.1609 22 6 7.4743 -2.2633 1.4555 23 6 6.1003 1.8875 0.0100 24 6 5.2624 2.9871 0.0048 25 6 3.8881 2.8108 -0.0006 26 8 3.0624 3.8913 -0.0064 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.7886 -0.5708 0.0048 33 1 6.0060 -1.4158 -0.4973 34 1 7.4176 -0.3315 -0.4938 35 1 5.0490 -0.0299 2.1303 36 1 4.8972 -1.7817 1.8547 37 1 5.0052 -1.2840 4.2763 38 1 6.5636 -0.4552 4.0417 39 1 5.9842 -3.3966 3.4603 40 1 6.9419 -2.7655 4.8223 41 1 9.2215 -4.0205 6.1018 42 1 6.8062 -3.0478 1.1001 43 1 8.3602 -2.2261 0.8215 44 1 7.1714 2.0263 0.0141 45 1 5.6790 3.9835 0.0048 46 1 2.8197 4.2055 0.8754 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177444.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:06 Heat of formation + Delta-G solvation = -81.689303 kcal Electronic energy + Delta-G solvation = -25473.544159 eV Core-core repulsion = 21941.308265 eV Total energy + Delta-G solvation = -3532.235894 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.56635 -39.94624 -38.86762 -37.69677 -35.49731 -33.69677 -32.73059 -31.91058 -31.10471 -30.32977 -27.00402 -26.85210 -24.93246 -23.76992 -23.37555 -22.62661 -21.97703 -20.36132 -19.54439 -18.51403 -18.25853 -17.32284 -17.22147 -16.81568 -16.41450 -16.30124 -15.88337 -15.36013 -15.06961 -14.92992 -14.67929 -14.61062 -14.40186 -13.95754 -13.88303 -13.51652 -13.43844 -13.19607 -12.90361 -12.84622 -12.72915 -12.60084 -12.47777 -12.44155 -12.04208 -11.86060 -11.72236 -11.62616 -11.49227 -11.36730 -10.87394 -10.65928 -10.37783 -9.76308 -9.19748 -9.00783 -8.07173 -6.21242 0.15564 0.39641 1.42099 1.42760 1.52613 2.18657 2.42672 2.54699 3.20010 3.22889 3.28231 3.66725 3.85842 4.00640 4.05817 4.11997 4.18861 4.25868 4.32394 4.36201 4.39144 4.54612 4.57568 4.60519 4.67446 4.75936 4.86681 4.88413 4.90987 4.92227 4.97230 5.07315 5.12627 5.17823 5.22042 5.31716 5.38249 5.51591 5.62050 5.64297 5.72509 5.96170 6.12305 6.20731 6.27284 6.31295 6.45903 6.88131 6.91576 7.46702 8.97501 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.021556 B = 0.003203 C = 0.003005 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1298.643580 B = 8739.387857 C = 9314.335061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 O -0.322 6.322 4 C 0.092 3.908 5 C -0.190 4.190 6 C -0.051 4.051 7 C 0.092 3.908 8 N -0.539 5.539 9 C 0.070 3.930 10 C -0.111 4.111 11 C -0.103 4.103 12 C 0.053 3.947 13 H -0.002 1.002 14 C -0.536 4.536 15 H 0.053 0.947 16 C 0.014 3.986 17 N -0.915 5.915 18 Si 0.954 3.046 19 H -0.276 1.276 20 H -0.284 1.284 21 H -0.268 1.268 22 C 0.081 3.919 23 C -0.124 4.124 24 C -0.104 4.104 25 C 0.060 3.940 26 O -0.499 6.499 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.097 0.903 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.133 0.867 33 H 0.042 0.958 34 H 0.093 0.907 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.065 0.935 38 H 0.049 0.951 39 H 0.022 0.978 40 H 0.057 0.943 41 H 0.260 0.740 42 H 0.017 0.983 43 H 0.062 0.938 44 H 0.141 0.859 45 H 0.156 0.844 46 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.862 11.086 -10.569 20.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.031 4.031 3 O -0.236 6.236 4 C 0.046 3.954 5 C -0.209 4.209 6 C -0.052 4.052 7 C -0.035 4.035 8 N -0.263 5.263 9 C -0.058 4.058 10 C -0.149 4.149 11 C -0.141 4.141 12 C 0.034 3.966 13 H 0.016 0.984 14 C -0.574 4.574 15 H 0.071 0.929 16 C -0.185 4.185 17 N -0.555 5.555 18 Si 0.779 3.221 19 H -0.202 1.202 20 H -0.210 1.210 21 H -0.193 1.193 22 C -0.046 4.046 23 C -0.143 4.143 24 C -0.123 4.123 25 C 0.015 3.985 26 O -0.310 6.310 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.151 0.849 33 H 0.060 0.940 34 H 0.111 0.889 35 H 0.099 0.901 36 H 0.042 0.958 37 H 0.084 0.916 38 H 0.068 0.932 39 H 0.041 0.959 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.035 0.965 43 H 0.080 0.920 44 H 0.159 0.841 45 H 0.174 0.826 46 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -13.643 11.503 -10.797 20.857 hybrid contribution 0.159 -1.810 0.613 1.917 sum -13.485 9.693 -10.185 19.481 Atomic orbital electron populations 1.21777 0.91102 1.04083 1.03352 1.23040 0.97209 0.81064 1.01804 1.86109 1.18173 1.30635 1.88672 1.19501 0.83124 0.93841 0.98943 1.21129 0.93497 0.98135 1.08177 1.19630 0.92760 0.95191 0.97607 1.21143 0.98544 0.94041 0.89727 1.62085 1.23724 1.30763 1.09739 1.22053 0.90536 1.00016 0.93205 1.21591 0.99483 0.97937 0.95863 1.21454 0.96295 0.94229 1.02100 1.18579 0.93031 0.94377 0.90569 0.98409 1.21523 1.37295 1.04745 0.93850 0.92921 1.25717 0.96632 1.00672 0.95466 1.70038 1.47119 1.39227 0.99099 0.85626 0.78926 0.80147 0.77355 1.20181 1.20993 1.19275 1.22018 0.96537 0.87293 0.98771 1.21044 1.00926 0.90845 1.01449 1.21440 0.90955 1.00725 0.99135 1.17923 0.89378 0.83988 1.07217 1.84821 1.66648 1.44553 1.34997 0.91617 0.91612 0.88463 0.91649 0.91844 0.84936 0.93994 0.88910 0.90123 0.95849 0.91629 0.93248 0.95892 0.92433 0.93102 0.96470 0.91982 0.84074 0.82622 0.74030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 10.28 71.98 0.74 -1.23 16 2 C 0.04 0.79 5.46 71.98 0.39 1.18 16 3 O -0.32 -7.70 9.92 -79.62 -0.79 -8.49 16 4 C 0.09 2.29 6.70 22.57 0.15 2.44 16 5 C -0.19 -4.67 6.78 22.35 0.15 -4.52 16 6 C -0.05 -1.31 4.12 -19.86 -0.08 -1.39 16 7 C 0.09 2.58 5.43 85.56 0.46 3.05 16 8 N -0.54 -19.00 4.80 -900.92 -4.32 -23.32 16 9 C 0.07 2.36 4.57 86.33 0.39 2.75 16 10 C -0.11 -4.33 6.09 30.65 0.19 -4.14 16 11 C -0.10 -4.93 5.03 30.67 0.15 -4.77 16 12 C 0.05 2.70 2.26 -11.49 -0.03 2.67 16 13 H 0.00 -0.13 8.14 -2.39 -0.02 -0.15 16 14 C -0.54 -29.56 8.56 25.60 0.22 -29.34 16 15 H 0.05 2.84 7.74 -2.91 -0.02 2.81 16 16 C 0.01 0.77 5.31 84.66 0.45 1.22 16 17 N -0.92 -53.18 11.36 21.45 0.24 -52.94 16 18 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 19 H -0.28 -12.32 7.11 99.48 0.71 -11.62 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 21 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 22 C 0.08 3.37 4.65 86.33 0.40 3.78 16 23 C -0.12 -2.86 9.69 22.27 0.22 -2.64 16 24 C -0.10 -2.21 9.98 22.35 0.22 -1.99 16 25 C 0.06 1.42 6.72 22.57 0.15 1.57 16 26 O -0.50 -10.61 13.29 -79.64 -1.06 -11.67 16 27 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 28 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.07 1.11 7.67 -2.39 -0.02 1.09 16 31 H 0.06 1.14 7.66 -2.39 -0.02 1.12 16 32 H 0.13 3.05 6.30 -2.91 -0.02 3.03 16 33 H 0.04 1.14 8.02 -2.39 -0.02 1.12 16 34 H 0.09 2.41 8.08 -2.38 -0.02 2.39 16 35 H 0.08 2.50 5.64 -2.39 -0.01 2.49 16 36 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 38 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 39 H 0.02 1.09 8.14 -2.38 -0.02 1.07 16 40 H 0.06 3.14 6.16 -2.39 -0.01 3.12 16 41 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 42 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 43 H 0.06 2.52 8.12 -2.39 -0.02 2.50 16 44 H 0.14 2.94 8.06 -2.91 -0.02 2.91 16 45 H 0.16 2.54 8.06 -2.91 -0.02 2.51 16 46 H 0.40 5.02 9.06 -74.06 -0.67 4.35 16 Total: -1.00 -65.28 364.03 0.58 -64.70 By element: Atomic # 1 Polarization: 17.23 SS G_CDS: 0.29 Total: 17.52 kcal Atomic # 6 Polarization: -35.55 SS G_CDS: 4.19 Total: -31.37 kcal Atomic # 7 Polarization: -72.18 SS G_CDS: -4.08 Total: -76.26 kcal Atomic # 8 Polarization: -18.31 SS G_CDS: -1.85 Total: -20.16 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -65.28 0.58 -64.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177444.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.992 kcal (2) G-P(sol) polarization free energy of solvation -65.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds