Wall clock time and date at job start Tue Mar 31 2020 09:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47182 * 2 1 4 4 C 1.36000 * 117.00393 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.06635 * 359.97438 * 4 3 2 6 6 C 1.38244 * 119.99554 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.14743 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.92416 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47215 * 90.00195 * 8 7 6 10 10 C 1.47961 * 111.00005 * 169.99576 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31510 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99624 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47293 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47387 * 119.99775 * 16 14 12 19 19 H 1.48498 * 109.47096 * 240.00236 * 16 14 12 20 20 C 1.48296 * 111.00409 * 269.34877 * 9 8 7 21 21 C 1.38233 * 120.14671 * 0.27759 * 7 6 5 22 22 C 1.38570 * 120.00076 * 359.48795 * 21 7 6 23 23 O 1.35990 * 120.07614 * 180.25425 * 22 21 7 24 24 C 1.42896 * 117.00168 * 0.23161 * 23 22 21 25 25 C 1.52996 * 109.47298 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47658 * 299.99973 * 1 2 3 28 28 H 1.09008 * 109.47584 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.46966 * 239.99808 * 2 1 3 30 30 H 1.08997 * 109.46956 * 120.00063 * 2 1 3 31 31 H 1.08002 * 120.00800 * 0.05228 * 5 4 3 32 32 H 1.08001 * 119.92905 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47251 * 329.99770 * 8 7 6 34 34 H 1.09004 * 109.46551 * 210.00137 * 8 7 6 35 35 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 36 36 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 37 37 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 38 38 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 40 40 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 41 41 H 1.08002 * 120.00228 * 179.74449 * 21 7 6 42 42 H 1.09003 * 109.47491 * 300.00240 * 24 23 22 43 43 H 1.09004 * 109.46974 * 60.00039 * 24 23 22 44 44 H 1.09001 * 109.47536 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.47298 * 300.00124 * 25 24 23 46 46 H 1.09002 * 109.47226 * 60.00630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0005 6 6 5.5702 0.6106 -0.0005 7 6 6.1003 1.8875 -0.0011 8 6 7.5948 2.0810 -0.0017 9 7 8.0800 2.1436 -1.3869 10 6 9.4963 2.5690 -1.4340 11 6 9.6819 1.4760 -2.5020 12 6 10.9545 0.6841 -2.3447 13 1 11.6492 0.9298 -1.5552 14 6 11.2317 -0.3539 -3.2088 15 7 10.3860 -0.6526 -4.1706 16 14 12.8094 -1.3349 -3.0143 17 1 13.5854 -0.8020 -1.8658 18 1 12.4782 -2.7616 -2.7690 19 1 13.6193 -1.2207 -4.2537 20 6 8.4480 0.7952 -1.8826 21 6 5.2625 2.9869 0.0041 22 6 3.8880 2.8107 -0.0008 23 8 3.0624 3.8913 -0.0008 24 6 3.6802 5.1798 -0.0009 25 6 2.6000 6.2633 -0.0016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.7885 -0.5709 -0.0009 32 1 6.2282 -0.2459 -0.0009 33 1 8.0697 1.2453 0.5122 34 1 7.8409 3.0105 0.5118 35 1 10.0431 2.3780 -0.5105 36 1 9.6385 3.5812 -1.8122 37 1 9.5236 1.8275 -3.5215 38 1 10.5809 -1.3831 -4.7783 39 1 7.7533 0.3914 -2.6190 40 1 8.6889 0.0866 -1.0901 41 1 5.6791 3.9834 0.0078 42 1 4.3006 5.2854 0.8891 43 1 4.3006 5.2852 -0.8909 44 1 3.0712 7.2462 -0.0021 45 1 1.9799 6.1576 -0.8918 46 1 1.9792 6.1581 0.8882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597194723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:18 Heat of formation + Delta-G solvation = -24.640552 kcal Electronic energy + Delta-G solvation = -24774.170434 eV Core-core repulsion = 21244.408360 eV Total energy + Delta-G solvation = -3529.762074 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -40.50668 -38.78435 -38.55466 -36.85892 -32.94693 -32.30454 -31.59784 -30.98175 -29.62218 -27.86820 -25.48954 -24.97544 -24.34501 -23.21988 -22.60541 -21.34540 -20.62476 -18.56936 -18.45551 -17.19516 -16.51650 -16.34922 -16.28730 -15.82090 -14.88944 -14.71835 -14.65615 -14.19783 -14.05383 -13.88056 -13.56684 -13.41047 -12.82254 -12.74391 -12.73047 -12.65764 -12.12245 -11.97947 -11.82739 -11.64296 -11.59287 -11.24673 -11.09766 -10.96779 -10.84970 -10.75750 -10.67592 -10.52985 -10.27306 -9.74029 -9.21516 -9.01331 -8.54304 -8.43827 -7.89107 -7.58907 -6.05743 -4.10465 1.44553 1.60218 3.19915 3.22108 3.26620 3.35141 3.38426 3.84976 4.39618 4.75968 4.78310 4.82138 4.84139 4.94630 5.02199 5.06103 5.09038 5.15212 5.20931 5.25870 5.37045 5.43606 5.50733 5.61766 5.62449 5.66902 5.67749 5.77943 5.85017 5.90855 5.98899 6.15296 6.29192 6.36669 6.45824 6.48462 6.64090 6.76715 6.82039 6.85564 7.14344 7.16609 7.24658 7.68656 7.72637 7.90530 8.07625 8.36182 8.92338 9.54546 11.03595 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.003090 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.955610 B = 9060.642652 C =10298.150780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.053 3.947 3 O -0.309 6.309 4 C 0.090 3.910 5 C -0.171 4.171 6 C -0.107 4.107 7 C -0.054 4.054 8 C 0.059 3.941 9 N -0.485 5.485 10 C -0.003 4.003 11 C 0.039 3.961 12 C -0.518 4.518 13 H 0.057 0.943 14 C 0.066 3.934 15 N -0.885 5.885 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.283 1.283 20 C 0.016 3.984 21 C -0.156 4.156 22 C 0.098 3.902 23 O -0.309 6.309 24 C 0.053 3.947 25 C -0.149 4.149 26 H 0.075 0.925 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.131 0.869 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.069 0.931 35 H 0.055 0.945 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.261 0.739 39 H 0.067 0.933 40 H 0.054 0.946 41 H 0.132 0.868 42 H 0.059 0.941 43 H 0.063 0.937 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.967 5.847 10.289 20.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.022 4.022 3 O -0.223 6.223 4 C 0.045 3.955 5 C -0.190 4.190 6 C -0.125 4.125 7 C -0.054 4.054 8 C -0.069 4.069 9 N -0.208 5.208 10 C -0.131 4.131 11 C 0.020 3.980 12 C -0.556 4.556 13 H 0.076 0.924 14 C -0.137 4.137 15 N -0.523 5.523 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.209 1.209 20 C -0.113 4.113 21 C -0.175 4.175 22 C 0.052 3.948 23 O -0.223 6.223 24 C -0.023 4.023 25 C -0.206 4.206 26 H 0.094 0.906 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.149 0.851 32 H 0.143 0.857 33 H 0.067 0.933 34 H 0.087 0.913 35 H 0.073 0.927 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.085 0.915 40 H 0.072 0.928 41 H 0.150 0.850 42 H 0.077 0.923 43 H 0.081 0.919 44 H 0.095 0.905 45 H 0.084 0.916 46 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -17.869 6.271 9.816 21.330 hybrid contribution 1.702 -1.317 0.541 2.219 sum -16.167 4.954 10.358 19.829 Atomic orbital electron populations 1.21747 0.92985 1.02552 1.03418 1.22735 0.95693 0.82545 1.01243 1.86129 1.18413 1.28390 1.89401 1.18120 0.82779 0.91135 1.03465 1.20987 0.93953 0.97152 1.06879 1.20801 0.94031 0.97102 1.00613 1.19543 0.95570 0.92167 0.98169 1.21559 0.90686 1.00931 0.93741 1.68619 1.18626 1.18218 1.15338 1.24083 0.88119 1.00388 1.00525 1.20306 0.92982 0.90519 0.94229 1.21130 1.04848 1.15098 1.14546 0.92430 1.25014 0.96520 0.97272 0.94869 1.69975 1.35721 1.29427 1.17175 0.86581 0.83666 0.79941 0.78078 1.19753 1.21016 1.20929 1.24157 0.99200 0.89311 0.98610 1.20891 0.90565 0.99970 1.06079 1.18126 0.88889 0.85014 1.02730 1.86121 1.34159 1.12729 1.89301 1.22756 0.96594 0.81460 1.01458 1.21745 0.98930 0.96639 1.03336 0.90583 0.91676 0.91577 0.92142 0.92316 0.85136 0.85686 0.93267 0.91278 0.92686 0.91638 0.92380 0.92943 0.91492 0.92779 0.85018 0.92283 0.91904 0.90541 0.91597 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 10.28 37.15 0.38 -0.82 16 2 C 0.05 0.55 5.46 37.15 0.20 0.75 16 3 O -0.31 -4.43 9.92 -34.24 -0.34 -4.77 16 4 C 0.09 1.38 6.70 -39.12 -0.26 1.12 16 5 C -0.17 -2.44 9.04 -39.46 -0.36 -2.79 16 6 C -0.11 -1.66 9.69 -39.57 -0.38 -2.04 16 7 C -0.05 -0.87 5.44 -104.62 -0.57 -1.44 16 8 C 0.06 1.01 4.92 -4.97 -0.02 0.98 16 9 N -0.49 -9.82 6.15 -239.48 -1.47 -11.29 16 10 C 0.00 -0.06 7.50 -2.76 -0.02 -0.08 16 11 C 0.04 0.96 3.60 -90.84 -0.33 0.64 16 12 C -0.52 -13.98 8.77 -34.44 -0.30 -14.29 16 13 H 0.06 1.53 7.81 -52.49 -0.41 1.12 16 14 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 15 N -0.89 -25.43 13.29 55.43 0.74 -24.69 16 16 Si 0.89 20.93 29.54 -169.99 -5.02 15.91 16 17 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 18 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 C 0.02 0.36 7.53 -2.57 -0.02 0.34 16 21 C -0.16 -2.37 8.69 -39.46 -0.34 -2.72 16 22 C 0.10 1.52 6.70 -39.12 -0.26 1.26 16 23 O -0.31 -4.54 9.92 -34.21 -0.34 -4.88 16 24 C 0.05 0.58 5.46 37.16 0.20 0.78 16 25 C -0.15 -1.27 10.28 37.16 0.38 -0.89 16 26 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 29 H 0.06 0.59 7.66 -51.93 -0.40 0.19 16 30 H 0.06 0.54 7.66 -51.93 -0.40 0.14 16 31 H 0.13 1.53 6.30 -52.49 -0.33 1.20 16 32 H 0.13 1.87 8.06 -52.49 -0.42 1.45 16 33 H 0.05 0.84 7.32 -51.93 -0.38 0.46 16 34 H 0.07 1.06 8.02 -51.93 -0.42 0.65 16 35 H 0.05 1.11 7.88 -51.92 -0.41 0.70 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.06 1.60 8.14 -51.93 -0.42 1.17 16 38 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 39 H 0.07 1.62 8.14 -51.93 -0.42 1.20 16 40 H 0.05 1.24 7.43 -51.93 -0.39 0.85 16 41 H 0.13 1.79 6.30 -52.49 -0.33 1.46 16 42 H 0.06 0.58 7.65 -51.93 -0.40 0.19 16 43 H 0.06 0.68 7.67 -51.93 -0.40 0.29 16 44 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 377.02 15.07 5.68 5.68 Total: -1.00 -30.48 377.02 -10.17 -40.65 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.62 Total: 0.87 kcal Atomic # 6 Polarization: -15.68 SS G_CDS: -1.80 Total: -17.48 kcal Atomic # 7 Polarization: -35.25 SS G_CDS: -0.74 Total: -35.98 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: -0.68 Total: -9.65 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.48 -10.17 -40.65 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.005 kcal (2) G-P(sol) polarization free energy of solvation -30.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds