Wall clock time and date at job start Tue Mar 31 2020 09:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 O 1.42895 * 109.47182 * 2 1 4 4 C 1.36000 * 117.00393 * 180.02562 * 3 2 1 5 5 C 1.38562 * 120.06635 * 359.97438 * 4 3 2 6 6 C 1.38244 * 119.99554 * 180.02562 * 5 4 3 7 7 C 1.38254 * 120.14743 * 359.97438 * 6 5 4 8 8 C 1.50702 * 119.92416 * 180.02562 * 7 6 5 9 9 N 1.46902 * 109.47215 * 90.00195 * 8 7 6 10 10 C 1.47961 * 111.00005 * 169.99576 * 9 8 7 11 11 C 1.53934 * 86.17939 * 137.58072 * 10 9 8 12 12 C 1.50703 * 113.73399 * 221.81705 * 11 10 9 13 13 H 1.07999 * 119.99920 * 358.09577 * 12 11 10 14 14 C 1.37877 * 119.99669 * 178.10223 * 12 11 10 15 15 N 1.31510 * 120.00506 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 119.99624 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.47293 * 359.97438 * 16 14 12 18 18 H 1.48498 * 109.47387 * 119.99775 * 16 14 12 19 19 H 1.48498 * 109.47096 * 240.00236 * 16 14 12 20 20 C 1.48296 * 111.00409 * 269.34877 * 9 8 7 21 21 C 1.38233 * 120.14671 * 0.27759 * 7 6 5 22 22 C 1.38570 * 120.00076 * 359.48795 * 21 7 6 23 23 O 1.35990 * 120.07614 * 180.25425 * 22 21 7 24 24 C 1.42896 * 117.00168 * 0.23161 * 23 22 21 25 25 C 1.52996 * 109.47298 * 179.97438 * 24 23 22 26 26 H 1.09000 * 109.47484 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47658 * 299.99973 * 1 2 3 28 28 H 1.09008 * 109.47584 * 60.00209 * 1 2 3 29 29 H 1.09000 * 109.46966 * 239.99808 * 2 1 3 30 30 H 1.08997 * 109.46956 * 120.00063 * 2 1 3 31 31 H 1.08002 * 120.00800 * 0.05228 * 5 4 3 32 32 H 1.08001 * 119.92905 * 180.02562 * 6 5 4 33 33 H 1.09001 * 109.47251 * 329.99770 * 8 7 6 34 34 H 1.09004 * 109.46551 * 210.00137 * 8 7 6 35 35 H 1.09007 * 113.75652 * 23.26342 * 10 9 8 36 36 H 1.08993 * 113.76177 * 251.90248 * 10 9 8 37 37 H 1.09002 * 113.73279 * 90.64057 * 11 10 9 38 38 H 0.96995 * 120.00309 * 180.02562 * 15 14 12 39 39 H 1.09001 * 113.86054 * 108.14174 * 20 9 8 40 40 H 1.09000 * 113.76062 * 336.68481 * 20 9 8 41 41 H 1.08002 * 120.00228 * 179.74449 * 21 7 6 42 42 H 1.09003 * 109.47491 * 300.00240 * 24 23 22 43 43 H 1.09004 * 109.46974 * 60.00039 * 24 23 22 44 44 H 1.09001 * 109.47536 * 180.02562 * 25 24 23 45 45 H 1.08998 * 109.47298 * 300.00124 * 25 24 23 46 46 H 1.09002 * 109.47226 * 60.00630 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.3545 1.5255 -0.0005 5 6 4.1999 0.4277 -0.0005 6 6 5.5702 0.6106 -0.0005 7 6 6.1003 1.8875 -0.0011 8 6 7.5948 2.0810 -0.0017 9 7 8.0800 2.1436 -1.3869 10 6 9.4963 2.5690 -1.4340 11 6 9.6819 1.4760 -2.5020 12 6 10.9545 0.6841 -2.3447 13 1 11.6492 0.9298 -1.5552 14 6 11.2317 -0.3539 -3.2088 15 7 10.3860 -0.6526 -4.1706 16 14 12.8094 -1.3349 -3.0143 17 1 13.5854 -0.8020 -1.8658 18 1 12.4782 -2.7616 -2.7690 19 1 13.6193 -1.2207 -4.2537 20 6 8.4480 0.7952 -1.8826 21 6 5.2625 2.9869 0.0041 22 6 3.8880 2.8107 -0.0008 23 8 3.0624 3.8913 -0.0008 24 6 3.6802 5.1798 -0.0009 25 6 2.6000 6.2633 -0.0016 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 3.7885 -0.5709 -0.0009 32 1 6.2282 -0.2459 -0.0009 33 1 8.0697 1.2453 0.5122 34 1 7.8409 3.0105 0.5118 35 1 10.0431 2.3780 -0.5105 36 1 9.6385 3.5812 -1.8122 37 1 9.5236 1.8275 -3.5215 38 1 10.5809 -1.3831 -4.7783 39 1 7.7533 0.3914 -2.6190 40 1 8.6889 0.0866 -1.0901 41 1 5.6791 3.9834 0.0078 42 1 4.3006 5.2854 0.8891 43 1 4.3006 5.2852 -0.8909 44 1 3.0712 7.2462 -0.0021 45 1 1.9799 6.1576 -0.8918 46 1 1.9792 6.1581 0.8882 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597194723.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:32:18 Heat of formation + Delta-G solvation = -42.513463 kcal Electronic energy + Delta-G solvation = -24774.945462 eV Core-core repulsion = 21244.408360 eV Total energy + Delta-G solvation = -3530.537102 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.62179 -40.40905 -39.57735 -38.04525 -34.78764 -33.45570 -32.47913 -32.11892 -30.80574 -29.39381 -27.15463 -26.68959 -25.43229 -24.17176 -23.98786 -22.45717 -21.78544 -20.40911 -19.53480 -18.66219 -18.10195 -17.40623 -17.31932 -16.71949 -16.68945 -16.35230 -15.78015 -15.74112 -15.58056 -14.93498 -14.71677 -14.48284 -14.09498 -13.84104 -13.56380 -13.55141 -13.39671 -13.30407 -13.17234 -12.95557 -12.83040 -12.76383 -12.62060 -12.34033 -12.11456 -12.04903 -11.80820 -11.67037 -11.59933 -11.52379 -11.08437 -10.90891 -10.52101 -9.67702 -9.57610 -8.74858 -8.13949 -6.25596 0.29424 0.41278 1.41458 1.43642 1.54874 2.24635 2.25309 2.42624 2.65719 3.15682 3.38062 3.70536 3.83793 4.00286 4.06021 4.07096 4.11113 4.15109 4.24281 4.31935 4.34596 4.38553 4.42272 4.42958 4.53116 4.59310 4.71273 4.78078 4.87397 4.87824 4.89078 4.94619 4.95417 5.00006 5.10932 5.20372 5.24494 5.26044 5.29816 5.45632 5.64570 5.69073 5.72176 5.86531 6.14707 6.30701 6.38843 6.63029 6.83844 7.43014 8.95517 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016703 B = 0.003090 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.955610 B = 9060.642652 C =10298.150780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.042 3.958 3 O -0.325 6.325 4 C 0.081 3.919 5 C -0.169 4.169 6 C -0.118 4.118 7 C -0.071 4.071 8 C 0.063 3.937 9 N -0.485 5.485 10 C 0.013 3.987 11 C 0.019 3.981 12 C -0.530 4.530 13 H 0.060 0.940 14 C 0.014 3.986 15 N -0.922 5.922 16 Si 0.957 3.043 17 H -0.263 1.263 18 H -0.281 1.281 19 H -0.282 1.282 20 C 0.030 3.970 21 C -0.156 4.156 22 C 0.085 3.915 23 O -0.324 6.324 24 C 0.043 3.957 25 C -0.145 4.145 26 H 0.101 0.899 27 H 0.063 0.937 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.072 0.928 31 H 0.154 0.846 32 H 0.125 0.875 33 H 0.049 0.951 34 H 0.090 0.910 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.022 0.978 38 H 0.262 0.738 39 H 0.044 0.956 40 H 0.052 0.948 41 H 0.146 0.854 42 H 0.071 0.929 43 H 0.062 0.938 44 H 0.101 0.899 45 H 0.060 0.940 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.182 6.088 11.712 21.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 O -0.240 6.240 4 C 0.036 3.964 5 C -0.187 4.187 6 C -0.137 4.137 7 C -0.072 4.072 8 C -0.065 4.065 9 N -0.207 5.207 10 C -0.115 4.115 11 C 0.000 4.000 12 C -0.568 4.568 13 H 0.078 0.922 14 C -0.185 4.185 15 N -0.561 5.561 16 Si 0.782 3.218 17 H -0.187 1.187 18 H -0.207 1.207 19 H -0.207 1.207 20 C -0.099 4.099 21 C -0.175 4.175 22 C 0.040 3.960 23 O -0.239 6.239 24 C -0.032 4.032 25 C -0.202 4.202 26 H 0.120 0.880 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.083 0.917 30 H 0.090 0.910 31 H 0.172 0.828 32 H 0.143 0.857 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.040 0.960 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.119 0.881 45 H 0.079 0.921 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.090 6.527 11.254 22.283 hybrid contribution 1.662 -1.347 0.102 2.142 sum -16.428 5.180 11.357 20.632 Atomic orbital electron populations 1.21779 0.91292 1.04128 1.03086 1.23071 0.97093 0.81012 1.02070 1.86122 1.17844 1.30854 1.89228 1.18372 0.83495 0.91450 1.03113 1.21194 0.93373 0.98150 1.06010 1.20930 0.94734 0.97039 1.00969 1.19542 0.95141 0.92815 0.99672 1.21562 0.91238 1.02066 0.91651 1.68541 1.18234 1.16023 1.17903 1.23949 0.88428 0.99771 0.99353 1.20290 0.93311 0.92692 0.93703 1.21464 1.05604 1.15282 1.14487 0.92179 1.25823 0.99700 0.98423 0.94597 1.70104 1.37653 1.30154 1.18140 0.85530 0.79725 0.78358 0.78189 1.18746 1.20661 1.20741 1.23847 0.97668 0.90449 0.97981 1.21001 0.90483 1.00356 1.05677 1.18351 0.89208 0.85672 1.02811 1.86114 1.34896 1.13701 1.89204 1.23054 0.97652 0.80504 1.01946 1.21772 0.98385 0.96891 1.03129 0.88026 0.91750 0.92154 0.91702 0.91007 0.82839 0.85658 0.93226 0.89150 0.91538 0.90164 0.95970 0.92933 0.93726 0.92941 0.83663 0.91110 0.92015 0.88091 0.92109 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.04 0.81 5.46 71.98 0.39 1.20 16 3 O -0.33 -9.12 9.92 -79.69 -0.79 -9.91 16 4 C 0.08 2.44 6.70 22.57 0.15 2.59 16 5 C -0.17 -4.68 9.04 22.35 0.20 -4.47 16 6 C -0.12 -3.60 9.69 22.27 0.22 -3.39 16 7 C -0.07 -2.24 5.44 -19.86 -0.11 -2.35 16 8 C 0.06 2.05 4.92 85.56 0.42 2.47 16 9 N -0.48 -19.31 6.15 -911.59 -5.61 -24.92 16 10 C 0.01 0.54 7.50 86.41 0.65 1.19 16 11 C 0.02 0.97 3.60 -10.89 -0.04 0.93 16 12 C -0.53 -28.73 8.77 25.60 0.22 -28.51 16 13 H 0.06 3.15 7.81 -2.91 -0.02 3.13 16 14 C 0.01 0.76 5.46 84.66 0.46 1.22 16 15 N -0.92 -53.98 13.29 21.45 0.28 -53.69 16 16 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 17 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 20 C 0.03 1.38 7.53 86.34 0.65 2.03 16 21 C -0.16 -4.61 8.69 22.35 0.19 -4.42 16 22 C 0.08 2.60 6.70 22.57 0.15 2.75 16 23 O -0.32 -9.35 9.92 -79.57 -0.79 -10.14 16 24 C 0.04 0.89 5.46 71.98 0.39 1.29 16 25 C -0.14 -2.23 10.28 71.98 0.74 -1.49 16 26 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 27 H 0.06 0.93 8.14 -2.39 -0.02 0.92 16 28 H 0.06 0.94 8.14 -2.38 -0.02 0.92 16 29 H 0.06 1.18 7.66 -2.39 -0.02 1.16 16 30 H 0.07 1.18 7.66 -2.39 -0.02 1.16 16 31 H 0.15 3.37 6.30 -2.91 -0.02 3.35 16 32 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.05 1.63 7.32 -2.39 -0.02 1.61 16 34 H 0.09 2.57 8.02 -2.39 -0.02 2.55 16 35 H 0.07 2.55 7.88 -2.38 -0.02 2.53 16 36 H 0.08 3.01 8.14 -2.39 -0.02 2.99 16 37 H 0.02 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.26 14.51 8.31 -92.71 -0.77 13.74 16 39 H 0.04 2.23 8.14 -2.39 -0.02 2.21 16 40 H 0.05 2.42 7.43 -2.39 -0.02 2.41 16 41 H 0.15 3.74 6.30 -2.91 -0.02 3.73 16 42 H 0.07 1.29 7.65 -2.39 -0.02 1.27 16 43 H 0.06 1.28 7.67 -2.39 -0.02 1.26 16 44 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -65.76 377.02 1.51 -64.25 By element: Atomic # 1 Polarization: 18.81 SS G_CDS: 0.95 Total: 19.76 kcal Atomic # 6 Polarization: -35.76 SS G_CDS: 5.44 Total: -30.32 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -5.32 Total: -78.61 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -1.58 Total: -20.05 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -65.76 1.51 -64.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597194723.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.735 kcal (2) G-P(sol) polarization free energy of solvation -65.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds