Wall clock time and date at job start Tue Mar 31 2020 10:13:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00043 * 2 1 4 4 C 1.50698 * 109.47154 * 70.98831 * 3 2 1 5 5 C 1.38287 * 119.97470 * 90.00278 * 4 3 2 6 6 C 1.38242 * 120.11666 * 179.97438 * 5 4 3 7 7 C 1.38177 * 120.05260 * 359.96867 * 6 5 4 8 8 C 1.38712 * 119.94163 * 0.03080 * 7 6 5 9 9 O 1.35896 * 120.05412 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00015 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47207 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47150 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99912 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99431 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00075 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47242 * 90.00153 * 16 14 12 18 18 H 1.48499 * 109.46993 * 210.00097 * 16 14 12 19 19 H 1.48501 * 109.47274 * 330.00123 * 16 14 12 20 20 C 1.38125 * 119.97296 * 269.97238 * 4 3 2 21 21 C 1.46897 * 110.99836 * 236.04426 * 2 1 3 22 22 C 1.53008 * 115.55022 * 271.88326 * 21 2 1 23 23 O 1.42898 * 109.47159 * 305.41687 * 22 21 2 24 24 C 1.52996 * 117.49831 * 126.18011 * 21 2 1 25 25 C 1.52997 * 60.00179 * 252.50726 * 24 21 2 26 26 H 1.08993 * 109.47277 * 60.00357 * 1 2 3 27 27 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47201 * 299.99807 * 1 2 3 29 29 H 1.08999 * 109.46752 * 310.98678 * 3 2 1 30 30 H 1.09000 * 109.46943 * 190.98602 * 3 2 1 31 31 H 1.08000 * 119.94164 * 0.25387 * 5 4 3 32 32 H 1.07993 * 119.97603 * 179.97438 * 6 5 4 33 33 H 1.07990 * 120.02541 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46772 * 299.99931 * 10 9 8 35 35 H 1.09000 * 109.47352 * 59.99584 * 10 9 8 36 36 H 1.09000 * 109.46966 * 299.99528 * 11 10 9 37 37 H 1.08994 * 109.47722 * 59.99793 * 11 10 9 38 38 H 0.97001 * 119.99023 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.02398 * 0.02562 * 20 4 3 40 40 H 1.08999 * 109.46462 * 65.41646 * 22 21 2 41 41 H 1.08995 * 109.46906 * 185.40909 * 22 21 2 42 42 H 0.96697 * 113.99639 * 180.02562 * 23 22 21 43 43 H 1.09001 * 117.49980 * 359.97438 * 24 21 2 44 44 H 1.09002 * 117.50112 * 145.01619 * 24 21 2 45 45 H 1.08995 * 117.50053 * 252.51592 * 25 24 21 46 46 H 1.09002 * 117.51525 * 107.47457 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7434 2.0063 1.3433 5 6 2.6851 1.8915 2.3494 6 6 2.4572 2.4731 3.5826 7 6 1.2873 3.1715 3.8126 8 6 0.3410 3.2881 2.8051 9 8 -0.8101 3.9748 3.0287 10 6 -0.9805 4.5509 4.3253 11 6 -2.3253 5.2778 4.3877 12 6 -2.5047 5.8859 5.7550 13 1 -1.7365 5.7654 6.5045 14 6 -3.6495 6.5958 6.0489 15 7 -3.8062 7.1260 7.2423 16 14 -4.9778 6.8047 4.7523 17 1 -5.9462 5.6832 4.8506 18 1 -5.6862 8.0911 4.9721 19 1 -4.3569 6.8057 3.4033 20 6 0.5721 2.7029 1.5684 21 6 1.9954 -0.7660 -1.1375 22 6 2.1895 -2.2636 -0.8914 23 8 3.0117 -2.4542 0.2617 24 6 2.9964 -0.0654 -2.0583 25 6 1.5689 -0.3301 -2.5408 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4964 1.9521 -0.7758 30 1 3.0675 1.3490 -0.1958 31 1 3.6024 1.3503 2.1699 32 1 3.1940 2.3817 4.3668 33 1 1.1098 3.6260 4.7760 34 1 -0.9583 3.7633 5.0785 35 1 -0.1747 5.2595 4.5168 36 1 -2.3479 6.0654 3.6345 37 1 -3.1308 4.5689 4.1965 38 1 -4.6117 7.6252 7.4491 39 1 -0.1631 2.7923 0.7824 40 1 1.2197 -2.7336 -0.7279 41 1 2.6703 -2.7151 -1.7592 42 1 3.1774 -3.3821 0.4775 43 1 3.2642 0.9641 -1.8203 44 1 3.7937 -0.6713 -2.4889 45 1 1.4269 -1.1102 -3.2886 46 1 0.8973 0.5248 -2.6197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597256122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:41 Heat of formation + Delta-G solvation = -27.120435 kcal Electronic energy + Delta-G solvation = -24504.503397 eV Core-core repulsion = 20974.633787 eV Total energy + Delta-G solvation = -3529.869610 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.26426 -39.47046 -37.37878 -36.35876 -34.19622 -33.33023 -31.16694 -31.01331 -29.45226 -27.70017 -26.93632 -25.33217 -24.13207 -22.77859 -22.29926 -21.33951 -20.15233 -19.32602 -17.76852 -17.56618 -16.88942 -16.54143 -15.77851 -15.71714 -15.54484 -15.39011 -14.64188 -14.53908 -14.28558 -14.11391 -13.59603 -13.54203 -13.11847 -12.98773 -12.76612 -12.51942 -12.39936 -12.04442 -11.73277 -11.66310 -11.47474 -11.31138 -11.24985 -11.08729 -10.81330 -10.66000 -10.57057 -10.17079 -10.04729 -9.97575 -9.80751 -9.34177 -8.74820 -8.62312 -8.42998 -7.84291 -6.13526 -4.14293 1.44278 1.71348 3.16572 3.28314 3.35476 3.40986 3.49371 3.78469 3.91844 4.09487 4.34495 4.38986 4.43802 4.70587 4.82289 4.94929 4.97099 5.09466 5.13848 5.18379 5.20584 5.29420 5.31267 5.35224 5.39955 5.50809 5.53393 5.55733 5.65414 5.66573 5.82706 5.87578 5.93753 5.98786 6.18478 6.43316 6.55520 6.67270 6.71786 6.81858 6.85231 6.95299 7.13573 7.23499 7.41615 7.62866 7.94950 8.39007 8.87382 9.46800 10.99038 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002534 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.150498 B =11045.949663 C =11613.808830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.486 5.486 3 C 0.092 3.908 4 C -0.044 4.044 5 C -0.144 4.144 6 C -0.081 4.081 7 C -0.209 4.209 8 C 0.142 3.858 9 O -0.321 6.321 10 C 0.073 3.927 11 C -0.009 4.009 12 C -0.526 4.526 13 H 0.074 0.926 14 C 0.072 3.928 15 N -0.898 5.898 16 Si 0.881 3.119 17 H -0.275 1.275 18 H -0.286 1.286 19 H -0.263 1.263 20 C -0.156 4.156 21 C 0.048 3.952 22 C 0.129 3.871 23 O -0.553 6.553 24 C -0.178 4.178 25 C -0.200 4.200 26 H 0.027 0.973 27 H 0.066 0.934 28 H 0.079 0.921 29 H 0.043 0.957 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.121 0.879 33 H 0.130 0.870 34 H 0.056 0.944 35 H 0.056 0.944 36 H 0.027 0.973 37 H 0.023 0.977 38 H 0.266 0.734 39 H 0.122 0.878 40 H 0.048 0.952 41 H 0.048 0.952 42 H 0.374 0.626 43 H 0.105 0.895 44 H 0.100 0.900 45 H 0.099 0.901 46 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.476 -18.568 -19.452 30.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.208 5.208 3 C -0.034 4.034 4 C -0.044 4.044 5 C -0.163 4.163 6 C -0.099 4.099 7 C -0.228 4.228 8 C 0.096 3.904 9 O -0.235 6.235 10 C -0.001 4.001 11 C -0.046 4.046 12 C -0.564 4.564 13 H 0.093 0.907 14 C -0.130 4.130 15 N -0.536 5.536 16 Si 0.708 3.292 17 H -0.201 1.201 18 H -0.212 1.212 19 H -0.188 1.188 20 C -0.175 4.175 21 C -0.043 4.043 22 C 0.050 3.950 23 O -0.357 6.357 24 C -0.215 4.215 25 C -0.239 4.239 26 H 0.045 0.955 27 H 0.085 0.915 28 H 0.098 0.902 29 H 0.061 0.939 30 H 0.108 0.892 31 H 0.137 0.863 32 H 0.139 0.861 33 H 0.148 0.852 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.140 0.860 40 H 0.066 0.934 41 H 0.066 0.934 42 H 0.220 0.780 43 H 0.123 0.877 44 H 0.119 0.881 45 H 0.117 0.883 46 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 14.311 -17.979 -19.012 29.824 hybrid contribution -1.010 0.020 -1.024 1.438 sum 13.302 -17.959 -20.035 30.015 Atomic orbital electron populations 1.22506 0.86638 1.02093 1.01389 1.61728 1.07797 1.12469 1.38772 1.21220 1.00836 0.87787 0.93592 1.19308 0.93613 0.96322 0.95193 1.20773 0.99996 1.02318 0.93183 1.20907 0.96273 0.95896 0.96806 1.21401 0.95892 1.05486 1.00004 1.19075 0.86200 0.91511 0.93662 1.86106 1.35140 1.65281 1.36955 1.23062 1.00881 0.96028 0.80135 1.19581 0.90906 0.95530 0.98596 1.20846 1.05534 1.33779 0.96261 0.90740 1.24938 0.98026 0.94706 0.95378 1.69900 1.27897 1.35395 1.20389 0.86751 0.81988 0.77739 0.82750 1.20062 1.21183 1.18776 1.20239 0.98513 1.02849 0.95917 1.21794 1.02964 0.93832 0.85707 1.21405 0.93791 0.91864 0.87894 1.86627 1.71600 1.30308 1.47164 1.23461 0.93101 1.02536 1.02450 1.23456 0.98436 1.04115 0.97942 0.95461 0.91545 0.90222 0.93927 0.89245 0.86293 0.86086 0.85193 0.92554 0.92538 0.95464 0.95878 0.92458 0.85993 0.93385 0.93421 0.78013 0.87687 0.88137 0.88306 0.88347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 8.99 60.06 0.54 0.76 16 2 N -0.49 -5.31 4.75 -228.60 -1.08 -6.39 16 3 C 0.09 1.01 3.83 -4.98 -0.02 0.99 16 4 C -0.04 -0.58 5.02 -104.65 -0.53 -1.10 16 5 C -0.14 -1.89 9.70 -39.56 -0.38 -2.27 16 6 C -0.08 -1.10 10.04 -39.60 -0.40 -1.50 16 7 C -0.21 -3.33 9.04 -39.43 -0.36 -3.68 16 8 C 0.14 2.46 6.69 -39.22 -0.26 2.20 16 9 O -0.32 -6.41 10.14 -19.41 -0.20 -6.61 16 10 C 0.07 1.53 4.68 37.16 0.17 1.71 16 11 C -0.01 -0.21 4.41 -27.88 -0.12 -0.34 16 12 C -0.53 -14.94 9.66 -34.44 -0.33 -15.27 16 13 H 0.07 2.23 7.99 -52.49 -0.42 1.81 16 14 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 15 N -0.90 -27.40 13.96 55.43 0.77 -26.62 16 16 Si 0.88 21.69 27.47 -169.99 -4.67 17.03 16 17 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 18 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.26 -6.30 6.54 56.52 0.37 -5.93 16 20 C -0.16 -2.34 8.06 -39.43 -0.32 -2.66 16 21 C 0.05 0.42 2.04 -131.60 -0.27 0.16 16 22 C 0.13 0.99 7.12 37.16 0.26 1.25 16 23 O -0.55 -5.02 13.60 -35.23 -0.48 -5.50 16 24 C -0.18 -1.35 9.10 -26.73 -0.24 -1.59 16 25 C -0.20 -1.43 9.33 -26.73 -0.25 -1.68 16 26 H 0.03 0.26 7.11 -51.93 -0.37 -0.11 16 27 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.08 0.97 6.27 -51.93 -0.33 0.65 16 29 H 0.04 0.44 7.99 -51.93 -0.41 0.02 16 30 H 0.09 0.90 6.07 -51.93 -0.32 0.59 16 31 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 33 H 0.13 2.05 6.30 -52.49 -0.33 1.72 16 34 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 35 H 0.06 1.15 7.66 -51.93 -0.40 0.75 16 36 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 37 H 0.02 0.56 7.57 -51.93 -0.39 0.17 16 38 H 0.27 7.56 8.31 -40.82 -0.34 7.22 16 39 H 0.12 1.72 7.99 -52.49 -0.42 1.30 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.05 0.27 8.09 -51.93 -0.42 -0.15 16 42 H 0.37 1.63 9.12 45.56 0.42 2.04 16 43 H 0.10 0.80 5.76 -51.93 -0.30 0.50 16 44 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 0.75 7.40 -51.93 -0.38 0.36 16 LS Contribution 370.98 15.07 5.59 5.59 Total: -1.00 -32.72 370.98 -9.21 -41.93 By element: Atomic # 1 Polarization: 8.18 SS G_CDS: -6.55 Total: 1.63 kcal Atomic # 6 Polarization: -18.46 SS G_CDS: -2.60 Total: -21.05 kcal Atomic # 7 Polarization: -32.70 SS G_CDS: -0.31 Total: -33.02 kcal Atomic # 8 Polarization: -11.43 SS G_CDS: -0.68 Total: -12.11 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -4.67 Total: 17.03 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.72 -9.21 -41.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597256122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.809 kcal (2) G-P(sol) polarization free energy of solvation -32.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds