Wall clock time and date at job start Tue Mar 31 2020 10:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46899 * 111.00043 * 2 1 4 4 C 1.50698 * 109.47154 * 70.98831 * 3 2 1 5 5 C 1.38287 * 119.97470 * 90.00278 * 4 3 2 6 6 C 1.38242 * 120.11666 * 179.97438 * 5 4 3 7 7 C 1.38177 * 120.05260 * 359.96867 * 6 5 4 8 8 C 1.38712 * 119.94163 * 0.03080 * 7 6 5 9 9 O 1.35896 * 120.05412 * 180.02562 * 8 7 6 10 10 C 1.42901 * 117.00015 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47207 * 180.02562 * 10 9 8 12 12 C 1.50705 * 109.47150 * 180.02562 * 11 10 9 13 13 H 1.07999 * 119.99683 * 359.97438 * 12 11 10 14 14 C 1.37878 * 119.99912 * 179.97438 * 12 11 10 15 15 N 1.31520 * 119.99431 * 179.97438 * 14 12 11 16 16 Si 1.86792 * 120.00075 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47242 * 90.00153 * 16 14 12 18 18 H 1.48499 * 109.46993 * 210.00097 * 16 14 12 19 19 H 1.48501 * 109.47274 * 330.00123 * 16 14 12 20 20 C 1.38125 * 119.97296 * 269.97238 * 4 3 2 21 21 C 1.46897 * 110.99836 * 236.04426 * 2 1 3 22 22 C 1.53008 * 115.55022 * 271.88326 * 21 2 1 23 23 O 1.42898 * 109.47159 * 305.41687 * 22 21 2 24 24 C 1.52996 * 117.49831 * 126.18011 * 21 2 1 25 25 C 1.52997 * 60.00179 * 252.50726 * 24 21 2 26 26 H 1.08993 * 109.47277 * 60.00357 * 1 2 3 27 27 H 1.09000 * 109.47556 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.47201 * 299.99807 * 1 2 3 29 29 H 1.08999 * 109.46752 * 310.98678 * 3 2 1 30 30 H 1.09000 * 109.46943 * 190.98602 * 3 2 1 31 31 H 1.08000 * 119.94164 * 0.25387 * 5 4 3 32 32 H 1.07993 * 119.97603 * 179.97438 * 6 5 4 33 33 H 1.07990 * 120.02541 * 180.02562 * 7 6 5 34 34 H 1.09000 * 109.46772 * 299.99931 * 10 9 8 35 35 H 1.09000 * 109.47352 * 59.99584 * 10 9 8 36 36 H 1.09000 * 109.46966 * 299.99528 * 11 10 9 37 37 H 1.08994 * 109.47722 * 59.99793 * 11 10 9 38 38 H 0.97001 * 119.99023 * 180.02562 * 15 14 12 39 39 H 1.08000 * 120.02398 * 0.02562 * 20 4 3 40 40 H 1.08999 * 109.46462 * 65.41646 * 22 21 2 41 41 H 1.08995 * 109.46906 * 185.40909 * 22 21 2 42 42 H 0.96697 * 113.99639 * 180.02562 * 23 22 21 43 43 H 1.09001 * 117.49980 * 359.97438 * 24 21 2 44 44 H 1.09002 * 117.50112 * 145.01619 * 24 21 2 45 45 H 1.08995 * 117.50053 * 252.51592 * 25 24 21 46 46 H 1.09002 * 117.51525 * 107.47457 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7434 2.0063 1.3433 5 6 2.6851 1.8915 2.3494 6 6 2.4572 2.4731 3.5826 7 6 1.2873 3.1715 3.8126 8 6 0.3410 3.2881 2.8051 9 8 -0.8101 3.9748 3.0287 10 6 -0.9805 4.5509 4.3253 11 6 -2.3253 5.2778 4.3877 12 6 -2.5047 5.8859 5.7550 13 1 -1.7365 5.7654 6.5045 14 6 -3.6495 6.5958 6.0489 15 7 -3.8062 7.1260 7.2423 16 14 -4.9778 6.8047 4.7523 17 1 -5.9462 5.6832 4.8506 18 1 -5.6862 8.0911 4.9721 19 1 -4.3569 6.8057 3.4033 20 6 0.5721 2.7029 1.5684 21 6 1.9954 -0.7660 -1.1375 22 6 2.1895 -2.2636 -0.8914 23 8 3.0117 -2.4542 0.2617 24 6 2.9964 -0.0654 -2.0583 25 6 1.5689 -0.3301 -2.5408 26 1 -0.3633 0.5137 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.4964 1.9521 -0.7758 30 1 3.0675 1.3490 -0.1958 31 1 3.6024 1.3503 2.1699 32 1 3.1940 2.3817 4.3668 33 1 1.1098 3.6260 4.7760 34 1 -0.9583 3.7633 5.0785 35 1 -0.1747 5.2595 4.5168 36 1 -2.3479 6.0654 3.6345 37 1 -3.1308 4.5689 4.1965 38 1 -4.6117 7.6252 7.4491 39 1 -0.1631 2.7923 0.7824 40 1 1.2197 -2.7336 -0.7279 41 1 2.6703 -2.7151 -1.7592 42 1 3.1774 -3.3821 0.4775 43 1 3.2642 0.9641 -1.8203 44 1 3.7937 -0.6713 -2.4889 45 1 1.4269 -1.1102 -3.2886 46 1 0.8973 0.5248 -2.6197 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597256122.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:13:40 Heat of formation + Delta-G solvation = -49.741932 kcal Electronic energy + Delta-G solvation = -24505.484339 eV Core-core repulsion = 20974.633787 eV Total energy + Delta-G solvation = -3530.850552 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27712 -40.44260 -38.59545 -37.02086 -35.45787 -34.93491 -32.94506 -32.11759 -30.81818 -28.49244 -27.64419 -27.13302 -25.12933 -23.55042 -23.30716 -22.92183 -21.56679 -20.03198 -19.31940 -18.45024 -18.15186 -17.48553 -17.00719 -16.95980 -16.88884 -16.37783 -16.23639 -15.58590 -15.17418 -15.07085 -14.82441 -14.50262 -14.40178 -14.25260 -14.10170 -13.96126 -13.24607 -13.14307 -13.13574 -12.75293 -12.62876 -12.55049 -12.34923 -12.12701 -11.98309 -11.90947 -11.74599 -11.67206 -11.56468 -11.41704 -11.22394 -10.83124 -10.60118 -9.83151 -9.21390 -9.10806 -8.36444 -6.43329 0.32076 0.53030 1.34774 1.36128 1.49002 2.30319 2.31872 2.59801 2.64385 2.98408 3.10394 3.40636 3.71728 3.81256 3.87754 3.92537 4.06194 4.18347 4.20094 4.28026 4.28700 4.35644 4.42157 4.50101 4.52991 4.56441 4.63244 4.65394 4.69839 4.71546 4.74771 4.87487 4.96774 5.03532 5.06912 5.11656 5.14742 5.27835 5.39540 5.47429 5.53260 5.64345 5.87020 6.01052 6.14591 6.16141 6.51490 6.62171 7.04558 7.21810 8.79335 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.024360 B = 0.002534 C = 0.002410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1149.150498 B =11045.949663 C =11613.808830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.500 5.500 3 C 0.097 3.903 4 C -0.040 4.040 5 C -0.139 4.139 6 C -0.080 4.080 7 C -0.223 4.223 8 C 0.109 3.891 9 O -0.336 6.336 10 C 0.088 3.912 11 C -0.005 4.005 12 C -0.537 4.537 13 H 0.041 0.959 14 C 0.013 3.987 15 N -0.942 5.942 16 Si 0.950 3.050 17 H -0.264 1.264 18 H -0.278 1.278 19 H -0.251 1.251 20 C -0.157 4.157 21 C 0.028 3.972 22 C 0.128 3.872 23 O -0.579 6.579 24 C -0.177 4.177 25 C -0.189 4.189 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.058 0.942 29 H 0.048 0.952 30 H 0.101 0.899 31 H 0.141 0.859 32 H 0.147 0.853 33 H 0.124 0.876 34 H 0.056 0.944 35 H 0.057 0.943 36 H 0.027 0.973 37 H 0.026 0.974 38 H 0.270 0.730 39 H 0.126 0.874 40 H 0.049 0.951 41 H 0.070 0.930 42 H 0.391 0.609 43 H 0.102 0.898 44 H 0.113 0.887 45 H 0.116 0.884 46 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.305 -20.095 -22.102 33.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.222 5.222 3 C -0.030 4.030 4 C -0.041 4.041 5 C -0.158 4.158 6 C -0.098 4.098 7 C -0.242 4.242 8 C 0.063 3.937 9 O -0.250 6.250 10 C 0.013 3.987 11 C -0.043 4.043 12 C -0.575 4.575 13 H 0.060 0.940 14 C -0.185 4.185 15 N -0.581 5.581 16 Si 0.772 3.228 17 H -0.189 1.189 18 H -0.204 1.204 19 H -0.175 1.175 20 C -0.176 4.176 21 C -0.062 4.062 22 C 0.049 3.951 23 O -0.386 6.386 24 C -0.214 4.214 25 C -0.229 4.229 26 H 0.053 0.947 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.066 0.934 30 H 0.119 0.881 31 H 0.159 0.841 32 H 0.165 0.835 33 H 0.142 0.858 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.046 0.954 37 H 0.045 0.955 38 H 0.079 0.921 39 H 0.144 0.856 40 H 0.067 0.933 41 H 0.088 0.912 42 H 0.240 0.760 43 H 0.121 0.879 44 H 0.131 0.869 45 H 0.134 0.866 46 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 15.164 -19.538 -21.674 32.885 hybrid contribution -1.115 0.390 -0.198 1.198 sum 14.049 -19.148 -21.871 32.286 Atomic orbital electron populations 1.22433 0.86928 1.02268 1.00669 1.61668 1.07718 1.12299 1.40520 1.21200 1.01591 0.88042 0.92134 1.19615 0.92686 0.95307 0.96468 1.21104 1.00543 1.01415 0.92711 1.21204 0.95818 0.94871 0.97866 1.21481 0.96739 1.06378 0.99565 1.19378 0.86023 0.93081 0.95169 1.86019 1.36926 1.66292 1.35803 1.22653 0.99030 0.95887 0.81131 1.19437 0.93009 0.95682 0.96151 1.21106 1.04888 1.34085 0.97450 0.94037 1.25888 1.00658 0.94270 0.97670 1.70032 1.29022 1.36480 1.22611 0.85665 0.78811 0.78199 0.80078 1.18915 1.20361 1.17469 1.20371 0.99338 1.02733 0.95174 1.21983 1.04220 0.94344 0.85700 1.21504 0.93990 0.91225 0.88338 1.86562 1.71890 1.32266 1.47911 1.23534 0.93576 1.02456 1.01806 1.23476 0.98038 1.04177 0.97160 0.94702 0.90932 0.92362 0.93400 0.88140 0.84135 0.83533 0.85836 0.92589 0.92497 0.95424 0.95541 0.92064 0.85616 0.93299 0.91182 0.76010 0.87947 0.86896 0.86598 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 8.99 127.69 1.15 1.64 16 2 N -0.50 -10.02 4.75 -877.17 -4.16 -14.18 16 3 C 0.10 1.93 3.83 85.56 0.33 2.26 16 4 C -0.04 -1.00 5.02 -19.88 -0.10 -1.10 16 5 C -0.14 -3.37 9.70 22.28 0.22 -3.15 16 6 C -0.08 -2.06 10.04 22.26 0.22 -1.84 16 7 C -0.22 -7.09 9.04 22.37 0.20 -6.89 16 8 C 0.11 3.79 6.69 22.51 0.15 3.94 16 9 O -0.34 -13.58 10.14 -92.38 -0.94 -14.51 16 10 C 0.09 3.75 4.68 71.98 0.34 4.09 16 11 C -0.01 -0.26 4.41 29.85 0.13 -0.13 16 12 C -0.54 -31.29 9.66 25.60 0.25 -31.04 16 13 H 0.04 2.61 7.99 -2.91 -0.02 2.58 16 14 C 0.01 0.78 5.47 84.65 0.46 1.25 16 15 N -0.94 -58.68 13.96 21.45 0.30 -58.38 16 16 Si 0.95 44.60 27.47 68.60 1.88 46.49 16 17 H -0.26 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 19 H -0.25 -11.21 6.54 99.48 0.65 -10.56 16 20 C -0.16 -4.65 8.06 22.37 0.18 -4.47 16 21 C 0.03 0.43 2.04 3.53 0.01 0.44 16 22 C 0.13 1.64 7.12 71.98 0.51 2.15 16 23 O -0.58 -9.30 13.60 -148.98 -2.03 -11.33 16 24 C -0.18 -2.18 9.10 30.59 0.28 -1.90 16 25 C -0.19 -2.20 9.33 30.59 0.29 -1.92 16 26 H 0.03 0.62 7.11 -2.39 -0.02 0.61 16 27 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.06 1.40 6.27 -2.38 -0.01 1.39 16 29 H 0.05 0.90 7.99 -2.39 -0.02 0.88 16 30 H 0.10 1.77 6.07 -2.39 -0.01 1.76 16 31 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 32 H 0.15 2.98 8.06 -2.91 -0.02 2.95 16 33 H 0.12 4.00 6.30 -2.92 -0.02 3.98 16 34 H 0.06 2.35 7.66 -2.39 -0.02 2.34 16 35 H 0.06 2.38 7.66 -2.39 -0.02 2.37 16 36 H 0.03 1.35 7.20 -2.39 -0.02 1.33 16 37 H 0.03 1.28 7.57 -2.39 -0.02 1.26 16 38 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.13 3.53 7.99 -2.91 -0.02 3.50 16 40 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.07 0.57 8.09 -2.39 -0.02 0.55 16 42 H 0.39 2.68 9.12 -74.06 -0.68 2.00 16 43 H 0.10 1.30 5.76 -2.39 -0.01 1.29 16 44 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.12 0.94 8.14 -2.39 -0.02 0.92 16 46 H 0.09 1.20 7.40 -2.39 -0.02 1.18 16 Total: -1.00 -70.71 370.98 -0.09 -70.80 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: 0.24 Total: 17.80 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 4.61 Total: -36.68 kcal Atomic # 7 Polarization: -68.70 SS G_CDS: -3.86 Total: -72.56 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -2.96 Total: -25.84 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 1.88 Total: 46.49 kcal Total: -70.71 -0.09 -70.80 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597256122.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.058 kcal (2) G-P(sol) polarization free energy of solvation -70.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds