Wall clock time and date at job start Tue Mar 31 2020 08:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46496 * 109.46856 * 2 1 4 4 C 1.46494 * 120.00607 * 274.33518 * 3 2 1 5 5 C 1.50705 * 109.47249 * 267.47337 * 4 3 2 6 6 H 1.08001 * 119.99469 * 359.97438 * 5 4 3 7 7 C 1.37878 * 120.00198 * 179.97438 * 5 4 3 8 8 N 1.31515 * 119.99754 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 119.99932 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46974 * 89.99847 * 9 7 5 11 11 H 1.48495 * 109.47217 * 210.00244 * 9 7 5 12 12 H 1.48503 * 109.47167 * 330.00218 * 9 7 5 13 13 C 1.34790 * 119.99940 * 94.33534 * 3 2 1 14 14 O 1.21280 * 119.99613 * 4.62379 * 13 3 2 15 15 C 1.50695 * 119.99967 * 184.62584 * 13 3 2 16 16 H 1.09004 * 109.46856 * 308.32327 * 15 13 3 17 17 C 1.53001 * 109.47440 * 68.31859 * 15 13 3 18 18 O 1.42900 * 109.47177 * 188.32340 * 15 13 3 19 19 C 1.42899 * 114.00163 * 149.99458 * 18 15 13 20 20 C 1.50697 * 109.46919 * 179.97438 * 19 18 15 21 21 C 1.38236 * 120.00491 * 269.72868 * 20 19 18 22 22 C 1.38236 * 119.99712 * 179.78976 * 21 20 19 23 23 C 1.38232 * 120.00474 * 0.46689 * 22 21 20 24 24 C 1.50693 * 120.00083 * 179.79227 * 23 22 21 25 25 C 1.38240 * 119.99432 * 359.76528 * 23 22 21 26 26 C 1.38230 * 120.00354 * 0.02562 * 25 23 22 27 27 H 1.08991 * 109.47366 * 299.99909 * 1 2 3 28 28 H 1.08999 * 109.46805 * 60.00340 * 1 2 3 29 29 H 1.09000 * 109.47036 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47271 * 239.99677 * 2 1 3 31 31 H 1.08999 * 109.46805 * 119.99660 * 2 1 3 32 32 H 1.09002 * 109.47025 * 27.46499 * 4 3 2 33 33 H 1.08995 * 109.48079 * 147.46499 * 4 3 2 34 34 H 0.96998 * 119.99622 * 180.02562 * 8 7 5 35 35 H 1.08996 * 109.46871 * 307.80791 * 17 15 13 36 36 H 1.09004 * 109.46465 * 67.80415 * 17 15 13 37 37 H 1.08992 * 109.47186 * 187.79807 * 17 15 13 38 38 H 1.08991 * 109.47352 * 300.00167 * 19 18 15 39 39 H 1.09001 * 109.46738 * 60.00381 * 19 18 15 40 40 H 1.07995 * 119.99720 * 0.02562 * 21 20 19 41 41 H 1.08007 * 119.99453 * 180.25608 * 22 21 20 42 42 H 1.09000 * 109.47019 * 269.97656 * 24 23 22 43 43 H 1.08999 * 109.47561 * 29.97378 * 24 23 22 44 44 H 1.09002 * 109.47272 * 149.97867 * 24 23 22 45 45 H 1.07998 * 119.99077 * 180.02562 * 25 23 22 46 46 H 1.07999 * 119.99765 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1720 2.1039 -1.2650 5 6 3.5796 1.9303 -1.7748 6 1 4.2887 1.3410 -1.2125 7 6 3.9619 2.5239 -2.9591 8 7 5.1904 2.3728 -3.4037 9 14 2.7351 3.5426 -3.9320 10 1 2.8048 4.9580 -3.4882 11 1 3.0606 3.4608 -5.3786 12 1 1.3646 3.0189 -3.7026 13 6 2.3261 1.9872 1.1640 14 8 2.2793 1.3636 2.2031 15 6 2.7283 3.4394 1.1741 16 1 3.5274 3.6001 0.4503 17 6 1.5226 4.3052 0.8030 18 8 3.1883 3.7973 2.4788 19 6 4.1749 4.8310 2.4841 20 6 4.5851 5.1266 3.9038 21 6 3.9125 6.0907 4.6312 22 6 4.2860 6.3586 5.9348 23 6 5.3383 5.6694 6.5080 24 6 5.7485 5.9649 7.9276 25 6 6.0140 4.7087 5.7789 26 6 5.6377 4.4376 4.4767 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.4689 1.7076 -1.9976 33 1 1.9715 3.1632 -1.1051 34 1 5.4595 2.7907 -4.2367 35 1 1.0870 3.9418 -0.1276 36 1 0.7786 4.2516 1.5978 37 1 1.8434 5.3390 0.6748 38 1 5.0452 4.5056 1.9144 39 1 3.7600 5.7315 2.0312 40 1 3.0928 6.6318 4.1822 41 1 3.7578 7.1090 6.5045 42 1 6.5016 6.7529 7.9316 43 1 4.8782 6.2912 8.4969 44 1 6.1626 5.0644 8.3811 45 1 6.8359 4.1700 6.2269 46 1 6.1659 3.6874 3.9071 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599137890.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:52:31 Heat of formation + Delta-G solvation = -77.196970 kcal Electronic energy + Delta-G solvation = -25170.435757 eV Core-core repulsion = 21638.394665 eV Total energy + Delta-G solvation = -3532.041091 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.22260 -40.38830 -38.61898 -37.03263 -34.74895 -34.42956 -33.06570 -31.86689 -31.29810 -29.51408 -29.24770 -25.99391 -25.17073 -24.59471 -23.66306 -23.24215 -21.76661 -20.14493 -19.11511 -18.43850 -17.89617 -17.14961 -16.84990 -16.59950 -16.35967 -16.19475 -15.91518 -15.58538 -14.83814 -14.71005 -14.63384 -14.43066 -14.34292 -14.25148 -14.03155 -13.75455 -13.44630 -13.26377 -13.15999 -13.04743 -12.87047 -12.79304 -12.63341 -12.43297 -12.21751 -12.06170 -11.88308 -11.86414 -11.83447 -11.65261 -10.97352 -10.78437 -10.42868 -9.85960 -9.53453 -9.49304 -8.30955 -6.39810 0.26792 0.47024 1.40905 1.42994 1.52706 1.61763 1.96228 2.34557 2.65637 3.02427 3.12907 3.54943 3.82478 3.86920 3.99760 4.07249 4.09939 4.14345 4.20200 4.23902 4.35510 4.36390 4.49259 4.57435 4.57657 4.61135 4.71716 4.76657 4.82600 4.83974 4.85358 4.91292 4.93297 5.02002 5.15380 5.17463 5.26919 5.29568 5.44242 5.45319 5.65077 5.65685 5.66675 6.05393 6.09818 6.15635 6.55087 6.66296 7.19436 7.30100 8.85525 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015619 B = 0.003569 C = 0.003220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.226857 B = 7843.075398 C = 8692.607347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.104 3.896 3 N -0.592 5.592 4 C 0.205 3.795 5 C -0.548 4.548 6 H 0.023 0.977 7 C 0.019 3.981 8 N -0.943 5.943 9 Si 0.939 3.061 10 H -0.255 1.255 11 H -0.287 1.287 12 H -0.233 1.233 13 C 0.514 3.486 14 O -0.585 6.585 15 C 0.071 3.929 16 H 0.087 0.913 17 C -0.166 4.166 18 O -0.375 6.375 19 C 0.096 3.904 20 C -0.112 4.112 21 C -0.102 4.102 22 C -0.129 4.129 23 C -0.088 4.088 24 C -0.111 4.111 25 C -0.134 4.134 26 C -0.115 4.115 27 H 0.045 0.955 28 H 0.065 0.935 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.061 0.939 34 H 0.269 0.731 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.090 0.910 38 H 0.049 0.951 39 H 0.080 0.920 40 H 0.138 0.862 41 H 0.150 0.850 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.139 0.861 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.870 9.902 13.639 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.018 4.018 3 N -0.323 5.323 4 C 0.083 3.917 5 C -0.586 4.586 6 H 0.041 0.959 7 C -0.180 4.180 8 N -0.582 5.582 9 Si 0.761 3.239 10 H -0.179 1.179 11 H -0.213 1.213 12 H -0.156 1.156 13 C 0.303 3.697 14 O -0.466 6.466 15 C 0.010 3.990 16 H 0.104 0.896 17 C -0.224 4.224 18 O -0.294 6.294 19 C 0.020 3.980 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.147 4.147 23 C -0.088 4.088 24 C -0.168 4.168 25 C -0.151 4.151 26 C -0.133 4.133 27 H 0.064 0.936 28 H 0.084 0.916 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.109 0.891 38 H 0.067 0.933 39 H 0.098 0.902 40 H 0.156 0.844 41 H 0.167 0.833 42 H 0.101 0.899 43 H 0.097 0.903 44 H 0.091 0.909 45 H 0.156 0.844 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.849 9.517 14.193 18.062 hybrid contribution 0.567 -0.111 -1.212 1.342 sum -5.282 9.406 12.981 16.879 Atomic orbital electron populations 1.22023 0.93646 1.03343 1.01884 1.21483 0.95834 0.82190 1.02331 1.47951 1.63413 1.14448 1.06529 1.19983 0.95687 0.94114 0.81897 1.21529 0.96694 1.32956 1.07416 0.95868 1.25848 0.97086 0.97105 0.97962 1.70067 1.19988 1.45566 1.22571 0.85835 0.80505 0.79948 0.77625 1.17897 1.21270 1.15574 1.20710 0.76324 0.89536 0.83179 1.90577 1.55224 1.67413 1.33394 1.21916 0.99266 0.91637 0.86172 0.89557 1.22344 0.96548 1.00553 1.02916 1.88021 1.58418 1.56612 1.26395 1.21542 0.91001 0.91128 0.94294 1.19687 0.97519 0.98534 0.95469 1.21281 0.98861 0.97008 0.94805 1.21356 0.97671 1.00745 0.94901 1.20374 0.95357 0.95355 0.97743 1.20846 1.02654 1.02912 0.90367 1.21272 1.01048 0.99025 0.93800 1.21238 0.97210 0.98613 0.96262 0.93575 0.91641 0.89420 0.90396 0.91908 0.92916 0.92116 0.92193 0.89642 0.91031 0.89080 0.93295 0.90175 0.84419 0.83277 0.89883 0.90260 0.90910 0.84365 0.86845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.28 10.24 71.98 0.74 -3.54 16 2 C 0.10 3.81 6.20 86.38 0.54 4.35 16 3 N -0.59 -24.70 2.46 -826.16 -2.03 -26.73 16 4 C 0.20 8.62 3.69 85.64 0.32 8.94 16 5 C -0.55 -29.11 9.54 25.60 0.24 -28.87 16 6 H 0.02 1.45 8.06 -2.91 -0.02 1.42 16 7 C 0.02 1.01 5.47 84.65 0.46 1.47 16 8 N -0.94 -55.54 13.96 21.45 0.30 -55.24 16 9 Si 0.94 38.21 27.47 68.60 1.88 40.09 16 10 H -0.25 -9.67 7.11 99.48 0.71 -8.96 16 11 H -0.29 -11.87 7.11 99.48 0.71 -11.17 16 12 H -0.23 -8.31 6.54 99.48 0.65 -7.66 16 13 C 0.51 22.78 7.02 87.65 0.62 23.39 16 14 O -0.58 -29.40 16.01 15.87 0.25 -29.14 16 15 C 0.07 2.73 2.32 29.85 0.07 2.80 16 16 H 0.09 3.57 7.01 -2.39 -0.02 3.55 16 17 C -0.17 -4.92 9.09 71.98 0.65 -4.27 16 18 O -0.38 -14.62 9.52 -130.08 -1.24 -15.86 16 19 C 0.10 3.07 5.87 71.23 0.42 3.48 16 20 C -0.11 -3.32 5.51 -19.87 -0.11 -3.43 16 21 C -0.10 -2.50 9.70 22.27 0.22 -2.28 16 22 C -0.13 -2.68 9.70 22.27 0.22 -2.46 16 23 C -0.09 -1.83 5.88 -19.87 -0.12 -1.95 16 24 C -0.11 -1.49 10.01 71.23 0.71 -0.78 16 25 C -0.13 -3.21 9.70 22.27 0.22 -2.99 16 26 C -0.12 -3.36 9.70 22.27 0.22 -3.15 16 27 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 28 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.08 2.82 8.10 -2.39 -0.02 2.80 16 31 H 0.06 2.46 7.24 -2.39 -0.02 2.44 16 32 H 0.05 2.08 7.11 -2.39 -0.02 2.06 16 33 H 0.06 2.33 3.71 -2.39 -0.01 2.32 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.09 2.45 5.48 -2.39 -0.01 2.44 16 36 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.09 2.20 8.07 -2.39 -0.02 2.18 16 38 H 0.05 1.63 8.03 -2.39 -0.02 1.61 16 39 H 0.08 2.11 8.01 -2.39 -0.02 2.09 16 40 H 0.14 2.83 8.06 -2.91 -0.02 2.81 16 41 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.08 0.91 8.14 -2.39 -0.02 0.90 16 43 H 0.08 0.86 8.09 -2.39 -0.02 0.84 16 44 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 45 H 0.14 2.70 8.06 -2.91 -0.02 2.67 16 46 H 0.11 3.40 8.06 -2.91 -0.02 3.38 16 Total: -1.00 -71.83 378.05 5.46 -66.37 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.89 Total: 29.80 kcal Atomic # 6 Polarization: -14.68 SS G_CDS: 5.40 Total: -9.28 kcal Atomic # 7 Polarization: -80.24 SS G_CDS: -1.73 Total: -81.98 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -0.98 Total: -45.00 kcal Atomic # 14 Polarization: 38.21 SS G_CDS: 1.88 Total: 40.09 kcal Total: -71.83 5.46 -66.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599137890.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.824 kcal (2) G-P(sol) polarization free energy of solvation -71.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.462 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds