Wall clock time and date at job start Tue Mar 31 2020 09:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46943 * 2 1 4 4 C 1.35900 * 116.99759 * 180.02562 * 3 2 1 5 5 C 1.38762 * 120.05784 * 0.02651 * 4 3 2 6 6 C 1.38118 * 119.94510 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05520 * 359.74102 * 6 5 4 8 8 C 1.38247 * 120.11170 * 0.51135 * 7 6 5 9 9 C 1.50698 * 119.97203 * 179.76235 * 8 7 6 10 10 C 1.52992 * 109.47316 * 269.72788 * 9 8 7 11 11 C 1.50699 * 109.47132 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99812 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00371 * 179.97438 * 13 11 10 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47145 * 119.99612 * 15 13 11 18 18 C 1.50694 * 109.47115 * 239.99685 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38166 * 120.05486 * 359.49137 * 8 7 6 27 27 H 1.09005 * 109.46902 * 299.99820 * 1 2 3 28 28 H 1.08997 * 109.47596 * 59.99448 * 1 2 3 29 29 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46902 * 240.00180 * 2 1 3 31 31 H 1.09002 * 109.47257 * 120.00217 * 2 1 3 32 32 H 1.08008 * 120.02369 * 359.95266 * 5 4 3 33 33 H 1.07998 * 119.96823 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.94167 * 180.27629 * 7 6 5 35 35 H 1.08998 * 109.46604 * 149.72370 * 9 8 7 36 36 H 1.08996 * 109.46745 * 29.72990 * 9 8 7 37 37 H 1.09000 * 109.47369 * 59.99730 * 10 9 8 38 38 H 1.09000 * 109.47078 * 299.99420 * 10 9 8 39 39 H 1.08994 * 109.47665 * 270.01072 * 14 13 11 40 40 H 1.09008 * 109.46786 * 30.00680 * 14 13 11 41 41 H 1.08997 * 109.47360 * 150.00121 * 14 13 11 42 42 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 43 43 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 44 44 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.03158 * 180.22970 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8878 -0.0081 8 6 5.2551 2.9850 -0.0018 9 6 5.8331 4.3767 -0.0023 10 6 6.0299 4.8478 1.4399 11 6 6.6074 6.2398 1.4393 12 8 6.8392 6.7997 0.3888 13 7 6.8673 6.8621 2.6062 14 6 6.5878 6.1855 3.8753 15 6 7.4291 8.2150 2.6057 16 1 7.5668 8.5508 1.5778 17 6 6.4718 9.1651 3.3280 18 6 8.7589 8.2070 3.3146 19 1 9.1466 7.2863 3.7249 20 6 9.4802 9.3753 3.4403 21 7 9.0079 10.4967 2.9410 22 14 11.1282 9.3654 4.3196 23 1 11.6979 10.7369 4.3190 24 1 10.9395 8.9080 5.7197 25 1 12.0578 8.4436 3.6187 26 6 3.8850 2.8067 -0.0007 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7885 -0.5729 -0.0013 33 1 6.2279 -0.2461 -0.0040 34 1 7.1668 2.0293 -0.0135 35 1 5.1502 5.0535 -0.5157 36 1 6.7939 4.3708 -0.5170 37 1 6.7129 4.1709 1.9533 38 1 5.0691 4.8538 1.9545 39 1 5.5694 6.4117 4.1911 40 1 6.6970 5.1088 3.7447 41 1 7.2891 6.5324 4.6341 42 1 6.8896 10.1718 3.3272 43 1 5.5099 9.1710 2.8153 44 1 6.3336 8.8295 4.3558 45 1 9.5152 11.3186 3.0298 46 1 3.2283 3.6640 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599329557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:31 Heat of formation + Delta-G solvation = -63.199307 kcal Electronic energy + Delta-G solvation = -24373.372284 eV Core-core repulsion = 20841.938177 eV Total energy + Delta-G solvation = -3531.434107 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.35318 -39.11363 -37.88919 -35.35965 -33.68663 -32.76888 -32.28776 -30.27553 -29.63730 -28.74319 -26.05435 -25.23150 -24.92002 -23.49478 -22.64181 -21.13905 -20.40851 -18.17703 -18.00392 -16.55628 -16.38004 -16.24849 -16.15288 -16.04764 -15.27400 -15.00469 -14.36525 -14.23764 -13.68121 -13.65968 -13.31598 -13.12011 -12.93706 -12.84813 -12.49325 -12.30272 -12.07175 -11.93454 -11.79141 -11.59324 -11.51072 -11.35419 -11.03230 -10.97809 -10.93183 -10.83824 -10.70602 -10.62607 -10.23510 -10.14094 -9.17135 -9.02174 -8.76273 -8.39875 -8.30712 -7.54003 -6.04984 -4.12953 1.19965 1.34379 2.94691 3.28898 3.34058 3.35195 3.46434 3.62195 4.04428 4.41509 4.54172 4.55176 4.67869 4.78292 4.84787 4.96770 5.06717 5.23399 5.24878 5.26677 5.30834 5.40262 5.40948 5.43614 5.61160 5.67174 5.69139 5.88868 5.92004 6.05144 6.12165 6.16159 6.31670 6.34730 6.40844 6.60117 6.68477 6.78913 6.87252 7.10452 7.25467 7.47015 7.57399 7.74719 8.04897 8.23366 8.58580 8.85998 9.11526 9.53357 11.00236 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.002459 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.923990 B =11383.473166 C =11752.257866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.055 3.945 3 O -0.317 6.317 4 C 0.129 3.871 5 C -0.218 4.218 6 C -0.079 4.079 7 C -0.153 4.153 8 C -0.034 4.034 9 C -0.067 4.067 10 C -0.132 4.132 11 C 0.502 3.498 12 O -0.555 6.555 13 N -0.594 5.594 14 C 0.084 3.916 15 C 0.257 3.743 16 H 0.063 0.937 17 C -0.146 4.146 18 C -0.525 4.525 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.888 5.888 22 Si 0.899 3.101 23 H -0.286 1.286 24 H -0.277 1.277 25 H -0.277 1.277 26 C -0.149 4.149 27 H 0.066 0.934 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.088 0.912 38 H 0.087 0.913 39 H 0.042 0.958 40 H 0.054 0.946 41 H 0.079 0.921 42 H 0.093 0.907 43 H 0.010 0.990 44 H 0.029 0.971 45 H 0.264 0.736 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -21.620 -3.009 25.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.232 6.232 4 C 0.084 3.916 5 C -0.236 4.236 6 C -0.097 4.097 7 C -0.172 4.172 8 C -0.034 4.034 9 C -0.104 4.104 10 C -0.172 4.172 11 C 0.289 3.711 12 O -0.435 6.435 13 N -0.325 5.325 14 C -0.060 4.060 15 C 0.157 3.843 16 H 0.081 0.919 17 C -0.204 4.204 18 C -0.564 4.564 19 H 0.077 0.923 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.727 3.273 23 H -0.212 1.212 24 H -0.203 1.203 25 H -0.203 1.203 26 C -0.168 4.168 27 H 0.086 0.914 28 H 0.085 0.915 29 H 0.096 0.904 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.141 0.859 33 H 0.141 0.859 34 H 0.143 0.857 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.060 0.940 40 H 0.072 0.928 41 H 0.098 0.902 42 H 0.111 0.889 43 H 0.029 0.971 44 H 0.048 0.952 45 H 0.073 0.927 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -13.006 -20.952 -3.555 24.916 hybrid contribution 0.970 -0.336 0.714 1.251 sum -12.036 -21.288 -2.841 24.620 Atomic orbital electron populations 1.21779 0.92784 1.02776 1.03635 1.22756 0.95837 0.82150 1.01277 1.86077 1.19233 1.29096 1.88745 1.18962 0.82080 0.94124 0.96454 1.21173 0.94479 0.97747 1.10248 1.20908 0.94225 0.97231 0.97380 1.21040 1.00048 0.91913 1.04160 1.19820 0.92204 0.95874 0.95546 1.20382 1.02426 0.91157 0.96480 1.21650 1.02337 0.95417 0.97820 1.20411 0.78935 0.87535 0.84218 1.90644 1.54133 1.67565 1.31109 1.48246 1.61313 1.18468 1.04521 1.21595 1.00474 0.96018 0.87949 1.18921 0.91021 0.75586 0.98813 0.91930 1.22078 0.96441 1.04026 0.97881 1.21284 1.03376 0.94727 1.37027 0.92339 1.24907 0.98022 0.95386 0.95554 1.69875 1.38300 0.99302 1.45096 0.86551 0.83738 0.77112 0.79939 1.21189 1.20262 1.20267 1.20358 0.94790 0.94837 1.06786 0.91446 0.91492 0.90444 0.92162 0.92116 0.85884 0.85918 0.85685 0.89996 0.89816 0.89340 0.89505 0.93959 0.92771 0.90192 0.88896 0.97064 0.95219 0.92652 0.85158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.40 5.46 37.16 0.20 0.61 16 3 O -0.32 -3.50 10.14 -19.42 -0.20 -3.69 16 4 C 0.13 1.50 6.69 -39.21 -0.26 1.23 16 5 C -0.22 -2.19 9.04 -39.43 -0.36 -2.55 16 6 C -0.08 -0.79 10.04 -39.61 -0.40 -1.19 16 7 C -0.15 -1.72 9.70 -39.56 -0.38 -2.11 16 8 C -0.03 -0.42 5.13 -104.65 -0.54 -0.96 16 9 C -0.07 -0.93 4.63 -27.89 -0.13 -1.06 16 10 C -0.13 -1.96 4.23 -27.89 -0.12 -2.08 16 11 C 0.50 10.36 7.67 -10.99 -0.08 10.28 16 12 O -0.56 -13.67 15.31 5.56 0.09 -13.58 16 13 N -0.59 -12.81 2.75 -175.26 -0.48 -13.29 16 14 C 0.08 1.42 9.24 59.85 0.55 1.97 16 15 C 0.26 6.65 2.64 -69.09 -0.18 6.47 16 16 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 17 C -0.15 -3.55 8.97 37.16 0.33 -3.21 16 18 C -0.53 -14.30 7.99 -34.44 -0.28 -14.57 16 19 H 0.06 1.56 7.33 -52.49 -0.38 1.17 16 20 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -25.33 11.32 55.43 0.63 -24.70 16 22 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 23 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 26 C -0.15 -1.84 9.64 -39.43 -0.38 -2.22 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.38 7.66 -51.93 -0.40 -0.02 16 31 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 32 H 0.12 0.95 6.30 -52.48 -0.33 0.62 16 33 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 34 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 35 H 0.08 1.20 8.04 -51.93 -0.42 0.78 16 36 H 0.08 1.23 8.04 -51.93 -0.42 0.81 16 37 H 0.09 1.18 7.40 -51.93 -0.38 0.80 16 38 H 0.09 1.15 8.11 -51.93 -0.42 0.73 16 39 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.75 6.44 -51.92 -0.33 0.41 16 41 H 0.08 1.44 7.02 -51.93 -0.36 1.08 16 42 H 0.09 2.47 6.07 -51.93 -0.32 2.16 16 43 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 44 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.13 1.55 8.06 -52.49 -0.42 1.13 16 LS Contribution 374.86 15.07 5.65 5.65 Total: -1.00 -32.08 374.86 -8.51 -40.59 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -7.44 Total: 1.12 kcal Atomic # 6 Polarization: -6.48 SS G_CDS: -1.73 Total: -8.21 kcal Atomic # 7 Polarization: -38.14 SS G_CDS: 0.14 Total: -37.99 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.11 Total: -17.28 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.08 -8.51 -40.59 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.607 kcal (2) G-P(sol) polarization free energy of solvation -32.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds