Wall clock time and date at job start Tue Mar 31 2020 09:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42905 * 109.46943 * 2 1 4 4 C 1.35900 * 116.99759 * 180.02562 * 3 2 1 5 5 C 1.38762 * 120.05784 * 0.02651 * 4 3 2 6 6 C 1.38118 * 119.94510 * 179.97438 * 5 4 3 7 7 C 1.38290 * 120.05520 * 359.74102 * 6 5 4 8 8 C 1.38247 * 120.11170 * 0.51135 * 7 6 5 9 9 C 1.50698 * 119.97203 * 179.76235 * 8 7 6 10 10 C 1.52992 * 109.47316 * 269.72788 * 9 8 7 11 11 C 1.50699 * 109.47132 * 180.02562 * 10 9 8 12 12 O 1.21281 * 119.99822 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00362 * 180.02562 * 11 10 9 14 14 C 1.46503 * 119.99812 * 359.97438 * 13 11 10 15 15 C 1.46497 * 120.00371 * 179.97438 * 13 11 10 16 16 H 1.09003 * 109.46733 * 0.02562 * 15 13 11 17 17 C 1.53000 * 109.47145 * 119.99612 * 15 13 11 18 18 C 1.50694 * 109.47115 * 239.99685 * 15 13 11 19 19 H 1.08000 * 120.00563 * 359.97438 * 18 15 13 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 15 13 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 15 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 15 23 23 H 1.48506 * 109.46985 * 179.97438 * 22 20 18 24 24 H 1.48494 * 109.47276 * 299.99832 * 22 20 18 25 25 H 1.48498 * 109.47150 * 60.00043 * 22 20 18 26 26 C 1.38166 * 120.05486 * 359.49137 * 8 7 6 27 27 H 1.09005 * 109.46902 * 299.99820 * 1 2 3 28 28 H 1.08997 * 109.47596 * 59.99448 * 1 2 3 29 29 H 1.09004 * 109.47198 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.46902 * 240.00180 * 2 1 3 31 31 H 1.09002 * 109.47257 * 120.00217 * 2 1 3 32 32 H 1.08008 * 120.02369 * 359.95266 * 5 4 3 33 33 H 1.07998 * 119.96823 * 180.02562 * 6 5 4 34 34 H 1.08000 * 119.94167 * 180.27629 * 7 6 5 35 35 H 1.08998 * 109.46604 * 149.72370 * 9 8 7 36 36 H 1.08996 * 109.46745 * 29.72990 * 9 8 7 37 37 H 1.09000 * 109.47369 * 59.99730 * 10 9 8 38 38 H 1.09000 * 109.47078 * 299.99420 * 10 9 8 39 39 H 1.08994 * 109.47665 * 270.01072 * 14 13 11 40 40 H 1.09008 * 109.46786 * 30.00680 * 14 13 11 41 41 H 1.08997 * 109.47360 * 150.00121 * 14 13 11 42 42 H 1.08997 * 109.47359 * 180.02562 * 17 15 13 43 43 H 1.09007 * 109.47356 * 300.00099 * 17 15 13 44 44 H 1.09000 * 109.47156 * 59.99824 * 17 15 13 45 45 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 46 46 H 1.07995 * 120.03158 * 180.22970 * 26 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4258 -0.0016 6 6 5.5689 0.6094 -0.0027 7 6 6.0962 1.8878 -0.0081 8 6 5.2551 2.9850 -0.0018 9 6 5.8331 4.3767 -0.0023 10 6 6.0299 4.8478 1.4399 11 6 6.6074 6.2398 1.4393 12 8 6.8392 6.7997 0.3888 13 7 6.8673 6.8621 2.6062 14 6 6.5878 6.1855 3.8753 15 6 7.4291 8.2150 2.6057 16 1 7.5668 8.5508 1.5778 17 6 6.4718 9.1651 3.3280 18 6 8.7589 8.2070 3.3146 19 1 9.1466 7.2863 3.7249 20 6 9.4802 9.3753 3.4403 21 7 9.0079 10.4967 2.9410 22 14 11.1282 9.3654 4.3196 23 1 11.6979 10.7369 4.3190 24 1 10.9395 8.9080 5.7197 25 1 12.0578 8.4436 3.6187 26 6 3.8850 2.8067 -0.0007 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.7885 -0.5729 -0.0013 33 1 6.2279 -0.2461 -0.0040 34 1 7.1668 2.0293 -0.0135 35 1 5.1502 5.0535 -0.5157 36 1 6.7939 4.3708 -0.5170 37 1 6.7129 4.1709 1.9533 38 1 5.0691 4.8538 1.9545 39 1 5.5694 6.4117 4.1911 40 1 6.6970 5.1088 3.7447 41 1 7.2891 6.5324 4.6341 42 1 6.8896 10.1718 3.3272 43 1 5.5099 9.1710 2.8153 44 1 6.3336 8.8295 4.3558 45 1 9.5152 11.3186 3.0298 46 1 3.2283 3.6640 0.0005 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599329557.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:30 Heat of formation + Delta-G solvation = -80.975900 kcal Electronic energy + Delta-G solvation = -24374.143135 eV Core-core repulsion = 20841.938177 eV Total energy + Delta-G solvation = -3532.204958 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.32 seconds Orbital eigenvalues (eV) -41.19532 -40.67630 -38.75205 -37.15910 -34.96938 -34.54774 -32.86563 -31.75781 -30.65098 -29.97027 -27.53922 -27.30287 -26.03509 -24.27797 -23.45958 -22.68190 -21.45823 -19.82132 -18.86517 -18.48301 -17.70301 -17.10240 -17.09432 -16.99518 -16.96890 -16.37367 -16.09742 -15.22283 -14.90261 -14.52249 -14.40049 -14.25203 -14.14811 -14.01077 -13.58270 -13.52746 -13.38133 -13.34122 -13.03734 -12.85436 -12.74018 -12.67180 -12.53659 -12.47218 -12.38907 -12.18219 -12.11574 -11.95058 -11.62944 -11.58603 -11.19266 -10.65532 -10.45944 -9.75584 -9.30206 -9.12356 -8.13636 -6.30377 0.35677 0.51582 1.41783 1.44461 1.51819 1.84753 2.26567 2.34610 2.52205 2.82966 3.13878 3.63556 3.88705 3.99081 4.07045 4.07852 4.16107 4.20912 4.28573 4.39693 4.44183 4.48572 4.49024 4.63227 4.69581 4.76296 4.78691 4.86490 4.90211 4.95479 4.98607 5.05587 5.08622 5.10926 5.20218 5.23502 5.38506 5.48398 5.51872 5.61525 5.68504 5.72028 5.86421 6.05302 6.17602 6.51150 6.77625 6.86950 7.33598 7.51440 8.90556 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.027527 B = 0.002459 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.923990 B =11383.473166 C =11752.257866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.046 3.954 3 O -0.337 6.337 4 C 0.119 3.881 5 C -0.214 4.214 6 C -0.076 4.076 7 C -0.162 4.162 8 C -0.042 4.042 9 C -0.060 4.060 10 C -0.115 4.115 11 C 0.492 3.508 12 O -0.606 6.606 13 N -0.603 5.603 14 C 0.080 3.920 15 C 0.259 3.741 16 H 0.007 0.993 17 C -0.131 4.131 18 C -0.538 4.538 19 H 0.062 0.938 20 C 0.012 3.988 21 N -0.918 5.918 22 Si 0.967 3.033 23 H -0.285 1.285 24 H -0.262 1.262 25 H -0.277 1.277 26 C -0.166 4.166 27 H 0.060 0.940 28 H 0.060 0.940 29 H 0.101 0.899 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.149 0.851 33 H 0.152 0.848 34 H 0.134 0.866 35 H 0.065 0.935 36 H 0.071 0.929 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.063 0.937 40 H 0.091 0.909 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.018 0.982 44 H 0.046 0.954 45 H 0.264 0.736 46 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.196 -24.965 -1.513 28.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.029 4.029 3 O -0.252 6.252 4 C 0.074 3.926 5 C -0.232 4.232 6 C -0.094 4.094 7 C -0.180 4.180 8 C -0.042 4.042 9 C -0.097 4.097 10 C -0.154 4.154 11 C 0.281 3.719 12 O -0.489 6.489 13 N -0.334 5.334 14 C -0.063 4.063 15 C 0.157 3.843 16 H 0.025 0.975 17 C -0.190 4.190 18 C -0.576 4.576 19 H 0.080 0.920 20 C -0.188 4.188 21 N -0.557 5.557 22 Si 0.792 3.208 23 H -0.210 1.210 24 H -0.186 1.186 25 H -0.202 1.202 26 C -0.185 4.185 27 H 0.080 0.920 28 H 0.079 0.921 29 H 0.120 0.880 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.167 0.833 33 H 0.169 0.831 34 H 0.151 0.849 35 H 0.084 0.916 36 H 0.089 0.911 37 H 0.131 0.869 38 H 0.128 0.872 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.037 0.963 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -13.208 -24.336 -2.027 27.763 hybrid contribution 0.947 0.646 0.192 1.162 sum -12.262 -23.690 -1.836 26.738 Atomic orbital electron populations 1.21817 0.91783 1.04161 1.03031 1.23060 0.96714 0.80745 1.02369 1.86063 1.18985 1.31435 1.88692 1.19090 0.82728 0.94259 0.96551 1.21492 0.94447 0.98464 1.08828 1.21244 0.94637 0.97534 0.95957 1.21218 1.00416 0.92188 1.04147 1.19591 0.92382 0.95017 0.97191 1.20231 1.01517 0.92259 0.95736 1.21604 1.03383 0.91464 0.98959 1.21453 0.78017 0.89328 0.83085 1.90615 1.56175 1.69215 1.32922 1.48279 1.61050 1.17300 1.06722 1.21850 1.01308 0.97770 0.85340 1.18523 0.91756 0.78439 0.95577 0.97492 1.21865 0.96134 1.02270 0.98728 1.21551 1.04118 0.94952 1.36980 0.91957 1.25789 1.01681 0.95015 0.96297 1.70028 1.39710 0.99861 1.46131 0.85482 0.79024 0.77033 0.79303 1.21008 1.18618 1.20203 1.20394 0.94826 0.95422 1.07865 0.92038 0.92118 0.88040 0.91030 0.90902 0.83348 0.83052 0.84856 0.91625 0.91071 0.86890 0.87212 0.91809 0.89026 0.91344 0.91463 0.96319 0.93490 0.92674 0.85840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 10.28 71.98 0.74 -0.68 16 2 C 0.05 0.56 5.46 71.98 0.39 0.96 16 3 O -0.34 -7.00 10.14 -92.42 -0.94 -7.93 16 4 C 0.12 2.58 6.69 22.51 0.15 2.73 16 5 C -0.21 -3.67 9.04 22.37 0.20 -3.47 16 6 C -0.08 -1.27 10.04 22.25 0.22 -1.04 16 7 C -0.16 -3.29 9.70 22.28 0.22 -3.07 16 8 C -0.04 -0.99 5.13 -19.88 -0.10 -1.09 16 9 C -0.06 -1.67 4.63 29.84 0.14 -1.54 16 10 C -0.11 -3.25 4.23 29.85 0.13 -3.13 16 11 C 0.49 20.53 7.67 87.66 0.67 21.21 16 12 O -0.61 -31.37 15.31 -3.03 -0.05 -31.42 16 13 N -0.60 -25.97 2.75 -826.80 -2.28 -28.25 16 14 C 0.08 2.52 9.24 127.77 1.18 3.70 16 15 C 0.26 13.84 2.64 44.24 0.12 13.96 16 16 H 0.01 0.45 6.90 -2.39 -0.02 0.44 16 17 C -0.13 -6.52 8.97 71.98 0.65 -5.87 16 18 C -0.54 -29.60 7.99 25.60 0.20 -29.40 16 19 H 0.06 3.30 7.33 -2.91 -0.02 3.28 16 20 C 0.01 0.64 5.30 84.66 0.45 1.09 16 21 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 22 Si 0.97 43.40 29.54 68.60 2.03 45.43 16 23 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 24 H -0.26 -11.03 7.11 99.48 0.71 -10.33 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 26 C -0.17 -4.01 9.64 22.37 0.22 -3.79 16 27 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 28 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 30 H 0.07 0.72 7.66 -2.38 -0.02 0.70 16 31 H 0.07 0.72 7.66 -2.39 -0.02 0.70 16 32 H 0.15 1.72 6.30 -2.91 -0.02 1.70 16 33 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 34 H 0.13 2.43 8.06 -2.91 -0.02 2.41 16 35 H 0.07 2.02 8.04 -2.39 -0.02 2.00 16 36 H 0.07 2.15 8.04 -2.39 -0.02 2.13 16 37 H 0.11 2.69 7.40 -2.39 -0.02 2.67 16 38 H 0.11 2.66 8.11 -2.39 -0.02 2.64 16 39 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 40 H 0.09 2.20 6.44 -2.38 -0.02 2.18 16 41 H 0.07 2.34 7.02 -2.39 -0.02 2.32 16 42 H 0.07 3.69 6.07 -2.39 -0.01 3.68 16 43 H 0.02 0.84 8.14 -2.38 -0.02 0.82 16 44 H 0.05 2.11 7.67 -2.39 -0.02 2.09 16 45 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 46 H 0.12 3.01 8.06 -2.91 -0.02 2.98 16 Total: -1.00 -72.87 374.86 5.53 -67.34 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: 0.95 Total: 17.87 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: 5.57 Total: -9.45 kcal Atomic # 7 Polarization: -79.80 SS G_CDS: -2.03 Total: -81.84 kcal Atomic # 8 Polarization: -38.37 SS G_CDS: -0.98 Total: -39.35 kcal Atomic # 14 Polarization: 43.40 SS G_CDS: 2.03 Total: 45.43 kcal Total: -72.87 5.53 -67.34 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599329557.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.633 kcal (2) G-P(sol) polarization free energy of solvation -72.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.32 seconds