Wall clock time and date at job start Tue Mar 31 2020 10:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.35998 * 117.00567 * 2 1 4 4 C 1.38614 * 120.20343 * 0.02562 * 3 2 1 5 5 C 1.38239 * 120.16317 * 179.97438 * 4 3 2 6 6 C 1.38390 * 120.11638 * 0.43644 * 5 4 3 7 7 C 1.38122 * 119.73679 * 359.86381 * 6 5 4 8 8 C 1.37801 * 120.56922 * 359.37778 * 7 6 5 9 9 O 1.36235 * 120.35881 * 182.52430 * 8 7 6 10 10 C 1.43143 * 115.62036 * 70.31457 * 9 8 7 11 11 C 1.51435 * 110.93402 * 273.26493 * 10 9 8 12 12 C 1.52145 * 113.44784 * 65.42761 * 11 10 9 13 13 C 1.51656 * 119.98208 * 179.19447 * 7 6 5 14 14 H 1.09002 * 109.59800 * 351.65815 * 13 7 6 15 15 N 1.46902 * 109.59997 * 231.34427 * 13 7 6 16 16 C 1.46905 * 110.99575 * 85.31294 * 15 13 7 17 17 C 1.53000 * 109.46925 * 180.02562 * 16 15 13 18 18 C 1.52992 * 109.47164 * 179.97438 * 17 16 15 19 19 C 1.50701 * 109.47366 * 179.97438 * 18 17 16 20 20 H 1.08006 * 119.99745 * 0.02562 * 19 18 17 21 21 C 1.37872 * 120.00106 * 179.97438 * 19 18 17 22 22 N 1.31518 * 120.00108 * 180.02562 * 21 19 18 23 23 Si 1.86795 * 120.00272 * 0.02562 * 21 19 18 24 24 H 1.48497 * 109.47376 * 89.99773 * 23 21 19 25 25 H 1.48501 * 109.47313 * 210.00002 * 23 21 19 26 26 H 1.48504 * 109.47027 * 329.99836 * 23 21 19 27 27 H 1.09010 * 109.46976 * 59.99913 * 1 2 3 28 28 H 1.08995 * 109.47491 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47408 * 300.00099 * 1 2 3 30 30 H 1.08007 * 119.91665 * 0.02562 * 4 3 2 31 31 H 1.08004 * 119.94105 * 180.42221 * 5 4 3 32 32 H 1.08000 * 120.13318 * 179.86407 * 6 5 4 33 33 H 1.09006 * 109.18202 * 33.63605 * 10 9 8 34 34 H 1.08988 * 109.18815 * 152.93337 * 10 9 8 35 35 H 1.09004 * 108.68513 * 186.45173 * 11 10 9 36 36 H 1.08998 * 108.68801 * 304.39490 * 11 10 9 37 37 H 1.08998 * 109.21395 * 172.13817 * 12 11 10 38 38 H 1.08997 * 109.21234 * 52.81342 * 12 11 10 39 39 H 1.00904 * 110.99890 * 321.36569 * 15 13 7 40 40 H 1.08999 * 109.47061 * 300.00258 * 16 15 13 41 41 H 1.08996 * 109.46928 * 60.00109 * 16 15 13 42 42 H 1.09001 * 109.46863 * 300.00138 * 17 16 15 43 43 H 1.09003 * 109.46969 * 59.99671 * 17 16 15 44 44 H 1.09001 * 109.47382 * 299.99867 * 18 17 16 45 45 H 1.09003 * 109.47407 * 59.99986 * 18 17 16 46 46 H 0.96999 * 120.00194 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2958 2.3770 0.0005 5 6 1.9244 3.6082 0.0011 6 6 3.3062 3.6823 -0.0080 7 6 4.0546 2.5214 -0.0148 8 6 3.4372 1.2895 0.0003 9 8 4.1794 0.1479 0.0453 10 6 4.8523 -0.1044 1.2832 11 6 6.2020 0.5817 1.3150 12 6 6.1097 2.1002 1.2980 13 6 5.5690 2.5961 -0.0433 14 1 5.8812 3.6280 -0.2044 15 7 6.0838 1.7505 -1.1286 16 6 6.0950 2.4796 -2.4039 17 6 6.6355 1.5683 -3.5076 18 6 6.6465 2.3273 -4.8359 19 6 7.1795 1.4299 -5.9230 20 1 7.4799 0.4190 -5.6898 21 6 7.2826 1.8990 -7.2153 22 7 7.7473 1.1156 -8.1641 23 14 6.7624 3.6470 -7.6189 24 1 7.9239 4.5585 -7.4594 25 1 6.2746 3.7074 -9.0202 26 1 5.6751 4.0650 -6.6978 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 0.2171 2.3228 0.0014 31 1 1.3359 4.5138 0.0084 32 1 3.7976 4.6441 -0.0098 33 1 4.2415 0.2684 2.1055 34 1 4.9944 -1.1785 1.4012 35 1 6.7290 0.2739 2.2182 36 1 6.7793 0.2570 0.4493 37 1 7.1012 2.5217 1.4630 38 1 5.4440 2.4281 2.0963 39 1 5.5518 0.8965 -1.2050 40 1 5.0804 2.7900 -2.6538 41 1 6.7323 3.3592 -2.3139 42 1 7.6500 1.2575 -3.2578 43 1 5.9978 0.6888 -3.5974 44 1 5.6319 2.6377 -5.0855 45 1 7.2839 3.2070 -4.7465 46 1 7.8202 1.4457 -9.0733 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601267944.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:09 Heat of formation + Delta-G solvation = -76.683410 kcal Electronic energy + Delta-G solvation = -25737.015068 eV Core-core repulsion = 22204.996247 eV Total energy + Delta-G solvation = -3532.018822 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.02102 -39.96300 -38.11157 -37.53185 -35.95021 -34.51476 -33.13871 -31.62231 -30.84961 -28.94740 -28.01515 -27.51667 -25.47026 -24.03259 -23.15364 -22.30275 -21.88342 -20.88740 -19.17483 -18.93571 -18.35934 -17.67868 -16.97524 -16.66849 -16.41356 -16.21391 -15.85552 -15.80352 -15.70377 -15.21868 -15.16168 -14.72269 -14.38406 -14.09747 -13.81297 -13.61973 -13.47418 -13.24017 -13.19434 -12.79654 -12.76130 -12.53281 -12.35549 -12.15677 -11.87431 -11.79678 -11.75416 -11.54998 -11.47129 -11.40591 -11.22492 -10.89988 -10.76530 -9.69785 -9.33552 -9.11970 -8.29515 -6.34051 0.14675 0.33184 1.34917 1.37640 1.50029 2.27734 2.36525 2.45861 2.85892 3.05310 3.32297 3.60845 3.88832 3.95061 4.05049 4.09325 4.16258 4.21109 4.28509 4.34108 4.35841 4.38016 4.42545 4.49478 4.58980 4.63402 4.68483 4.69306 4.84195 4.88758 4.97390 5.01321 5.07039 5.11131 5.17371 5.24623 5.33338 5.44488 5.47642 5.52133 5.60299 5.65724 5.67746 6.12770 6.17890 6.30049 6.50231 6.63850 6.73668 7.30315 8.87757 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014273 B = 0.003681 C = 0.003427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1961.296898 B = 7605.325599 C = 8168.579537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.331 6.331 3 C 0.094 3.906 4 C -0.201 4.201 5 C -0.085 4.085 6 C -0.141 4.141 7 C -0.115 4.115 8 C 0.045 3.955 9 O -0.337 6.337 10 C 0.063 3.937 11 C -0.151 4.151 12 C -0.099 4.099 13 C 0.125 3.875 14 H 0.097 0.903 15 N -0.680 5.680 16 C 0.071 3.929 17 C -0.089 4.089 18 C -0.007 4.007 19 C -0.535 4.535 20 H 0.027 0.973 21 C 0.002 3.998 22 N -0.953 5.953 23 Si 0.956 3.044 24 H -0.262 1.262 25 H -0.282 1.282 26 H -0.248 1.248 27 H 0.061 0.939 28 H 0.115 0.885 29 H 0.071 0.929 30 H 0.155 0.845 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.056 0.944 34 H 0.105 0.895 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.350 0.650 40 H 0.018 0.982 41 H 0.077 0.923 42 H 0.052 0.948 43 H 0.034 0.966 44 H 0.015 0.985 45 H 0.023 0.977 46 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.148 5.678 26.324 30.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.244 6.244 3 C 0.048 3.952 4 C -0.220 4.220 5 C -0.103 4.103 6 C -0.160 4.160 7 C -0.117 4.117 8 C 0.001 3.999 9 O -0.253 6.253 10 C -0.011 4.011 11 C -0.189 4.189 12 C -0.137 4.137 13 C 0.015 3.985 14 H 0.115 0.885 15 N -0.314 5.314 16 C -0.059 4.059 17 C -0.127 4.127 18 C -0.045 4.045 19 C -0.573 4.573 20 H 0.045 0.955 21 C -0.195 4.195 22 N -0.594 5.594 23 Si 0.778 3.222 24 H -0.187 1.187 25 H -0.208 1.208 26 H -0.172 1.172 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.176 0.824 32 H 0.165 0.835 33 H 0.074 0.926 34 H 0.123 0.877 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.173 0.827 40 H 0.037 0.963 41 H 0.096 0.904 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.033 0.967 45 H 0.042 0.958 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -14.332 5.423 26.158 30.316 hybrid contribution -1.142 0.244 -0.952 1.507 sum -15.474 5.667 25.206 30.115 Atomic orbital electron populations 1.23357 0.76573 1.05489 1.02286 1.86148 1.23295 1.26428 1.88560 1.19556 0.91316 0.85839 0.98449 1.21468 1.01230 0.91404 1.07899 1.21374 0.94512 0.97917 0.96452 1.21227 0.94238 0.97895 1.02661 1.21100 0.98575 0.92283 0.99779 1.17999 0.87350 0.86714 1.07838 1.86300 1.63547 1.38788 1.36713 1.22711 0.92798 1.01505 0.84095 1.21603 0.97421 0.95806 1.04066 1.21325 1.02017 0.95823 0.94491 1.20909 0.86191 0.98380 0.93051 0.88529 1.60870 1.58394 1.08101 1.04072 1.21901 0.98349 0.96905 0.88709 1.21241 1.00085 0.97628 0.93780 1.19458 0.96041 0.95794 0.93172 1.21513 1.42461 0.99493 0.93869 0.95463 1.26080 0.94576 1.02840 0.95962 1.70083 1.48240 1.38905 1.02141 0.85579 0.79954 0.79022 0.77608 1.18687 1.20794 1.17188 0.92045 0.86684 0.91040 0.82735 0.82441 0.83462 0.92551 0.87686 0.88920 0.91042 0.89905 0.91094 0.82724 0.96344 0.90429 0.92947 0.94752 0.96671 0.95841 0.92449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.82 113.37 1.11 1.36 16 2 O -0.33 -8.24 10.28 -79.68 -0.82 -9.06 16 3 C 0.09 2.39 6.71 22.61 0.15 2.54 16 4 C -0.20 -3.89 9.04 22.36 0.20 -3.68 16 5 C -0.08 -1.47 10.05 22.31 0.22 -1.25 16 6 C -0.14 -2.83 9.69 22.28 0.22 -2.61 16 7 C -0.11 -2.80 4.59 -19.69 -0.09 -2.89 16 8 C 0.05 1.25 5.30 22.42 0.12 1.37 16 9 O -0.34 -9.80 7.80 -82.39 -0.64 -10.44 16 10 C 0.06 1.35 6.49 71.47 0.46 1.82 16 11 C -0.15 -3.00 5.27 29.80 0.16 -2.84 16 12 C -0.10 -1.90 5.55 30.27 0.17 -1.73 16 13 C 0.12 2.98 2.68 44.43 0.12 3.10 16 14 H 0.10 2.11 7.59 -2.39 -0.02 2.09 16 15 N -0.68 -20.74 4.94 -494.05 -2.44 -23.18 16 16 C 0.07 2.44 5.49 86.30 0.47 2.91 16 17 C -0.09 -3.88 5.41 30.59 0.17 -3.71 16 18 C -0.01 -0.34 4.04 29.85 0.12 -0.22 16 19 C -0.54 -32.86 9.66 25.60 0.25 -32.61 16 20 H 0.03 1.84 7.99 -2.91 -0.02 1.82 16 21 C 0.00 0.11 5.47 84.65 0.46 0.57 16 22 N -0.95 -62.06 13.96 21.45 0.30 -61.76 16 23 Si 0.96 45.83 27.47 68.60 1.88 47.71 16 24 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 25 H -0.28 -13.17 7.11 99.48 0.71 -12.46 16 26 H -0.25 -11.11 6.54 99.48 0.65 -10.46 16 27 H 0.06 0.79 7.67 -2.38 -0.02 0.77 16 28 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.07 0.74 7.67 -2.39 -0.02 0.72 16 30 H 0.16 2.07 6.31 -2.91 -0.02 2.05 16 31 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 32 H 0.15 2.28 7.98 -2.91 -0.02 2.25 16 33 H 0.06 1.10 7.90 -2.38 -0.02 1.09 16 34 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 36 H 0.07 1.77 6.82 -2.39 -0.02 1.75 16 37 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.07 1.20 7.89 -2.39 -0.02 1.18 16 39 H 0.35 11.73 5.31 -89.69 -0.48 11.25 16 40 H 0.02 0.65 8.02 -2.39 -0.02 0.63 16 41 H 0.08 2.49 8.06 -2.39 -0.02 2.47 16 42 H 0.05 2.34 8.14 -2.39 -0.02 2.32 16 43 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 44 H 0.01 0.74 7.20 -2.39 -0.02 0.73 16 45 H 0.02 1.11 7.57 -2.39 -0.02 1.09 16 46 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -75.05 359.66 3.02 -72.03 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: 0.43 Total: 22.58 kcal Atomic # 6 Polarization: -42.19 SS G_CDS: 4.31 Total: -37.88 kcal Atomic # 7 Polarization: -82.80 SS G_CDS: -2.14 Total: -84.95 kcal Atomic # 8 Polarization: -18.04 SS G_CDS: -1.46 Total: -19.50 kcal Atomic # 14 Polarization: 45.83 SS G_CDS: 1.88 Total: 47.71 kcal Total: -75.05 3.02 -72.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601267944.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.652 kcal (2) G-P(sol) polarization free energy of solvation -75.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds