Wall clock time and date at job start Tue Mar 31 2020 09:53:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.46829 * 2 1 4 4 C 1.42908 * 113.99876 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46861 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46912 * 174.73927 * 5 4 3 7 7 N 1.46501 * 109.47228 * 294.73502 * 5 4 3 8 8 C 1.34778 * 120.00238 * 204.99994 * 7 5 4 9 9 O 1.21602 * 119.99940 * 0.02562 * 8 7 5 10 10 C 1.47434 * 120.00065 * 179.72778 * 8 7 5 11 11 C 1.39227 * 120.27801 * 355.54320 * 10 8 7 12 12 C 1.38222 * 120.08904 * 180.02562 * 11 10 8 13 13 C 1.38829 * 120.67448 * 0.02562 * 12 11 10 14 14 C 1.37598 * 120.57404 * 0.02562 * 13 12 11 15 15 C 1.40715 * 119.87644 * 359.67670 * 14 13 12 16 16 C 1.40884 * 120.32585 * 180.29622 * 15 14 13 17 17 H 1.07999 * 119.99949 * 216.84893 * 16 15 14 18 18 C 1.40273 * 120.00060 * 36.84736 * 16 15 14 19 19 N 1.30633 * 120.00221 * 9.21106 * 18 16 15 20 20 Si 1.86801 * 120.00014 * 189.21493 * 18 16 15 21 21 H 1.48501 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47256 * 119.99985 * 20 18 16 23 23 H 1.48502 * 109.46782 * 239.99862 * 20 18 16 24 24 C 1.52998 * 109.47415 * 54.73874 * 5 4 3 25 25 C 1.53000 * 109.46921 * 56.92950 * 24 5 4 26 26 C 1.53003 * 109.47370 * 176.92807 * 24 5 4 27 27 H 1.08995 * 109.47399 * 299.99473 * 1 2 3 28 28 H 1.09000 * 109.47338 * 59.99932 * 1 2 3 29 29 H 1.09007 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47475 * 240.00427 * 2 1 3 31 31 H 1.08998 * 109.47615 * 120.00537 * 2 1 3 32 32 H 1.09000 * 109.47278 * 60.00143 * 4 3 2 33 33 H 1.09001 * 109.46764 * 299.99943 * 4 3 2 34 34 H 0.97000 * 119.99962 * 25.00509 * 7 5 4 35 35 H 1.08003 * 119.96068 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.66562 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.71078 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.06153 * 179.97438 * 14 13 12 39 39 H 0.96991 * 119.99841 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47106 * 296.92768 * 24 5 4 41 41 H 1.08993 * 109.47520 * 62.56596 * 25 24 5 42 42 H 1.09000 * 109.47283 * 182.57271 * 25 24 5 43 43 H 1.09004 * 109.47276 * 302.56261 * 25 24 5 44 44 H 1.08998 * 109.46973 * 300.00042 * 26 24 5 45 45 H 1.09002 * 109.46756 * 59.99901 * 26 24 5 46 46 H 1.08994 * 109.46988 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 1 4.9077 3.0256 0.0939 7 7 3.3921 3.5601 -1.2538 8 6 4.0255 4.6560 -1.7167 9 8 4.9567 5.1287 -1.0937 10 6 3.5935 5.2780 -2.9816 11 6 2.5942 4.6862 -3.7495 12 6 2.1925 5.2724 -4.9351 13 6 2.7766 6.4525 -5.3752 14 6 3.7672 7.0603 -4.6386 15 6 4.1899 6.4873 -3.4249 16 6 5.1991 7.1050 -2.6601 17 1 5.9221 6.5012 -2.1318 18 6 5.2648 8.5041 -2.5847 19 7 4.2937 9.2308 -3.0699 20 14 6.7411 9.3284 -1.7907 21 1 7.6951 8.2909 -1.3229 22 1 7.4113 10.2063 -2.7834 23 1 6.2903 10.1432 -0.6339 24 6 3.1526 3.6453 1.1786 25 6 3.5449 2.9479 2.4828 26 6 3.6072 5.1055 1.2245 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9768 -0.8908 33 1 3.8339 0.9765 0.8892 34 1 2.6495 3.1829 -1.7509 35 1 2.1321 3.7679 -3.4184 36 1 1.4165 4.8077 -5.5251 37 1 2.4510 6.8969 -6.3042 38 1 4.2161 7.9779 -4.9890 39 1 4.3394 10.1982 -3.0181 40 1 2.0703 3.6053 1.0566 41 1 4.6222 3.0275 2.6276 42 1 3.0299 3.4227 3.3179 43 1 3.2618 1.8965 2.4320 44 1 4.6896 5.1454 1.3466 45 1 3.3277 5.6023 0.2954 46 1 3.1284 5.6088 2.0644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601526003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:37 Heat of formation + Delta-G solvation = -78.003832 kcal Electronic energy + Delta-G solvation = -25946.657492 eV Core-core repulsion = 22414.581413 eV Total energy + Delta-G solvation = -3532.076080 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -39.51548 -38.14090 -36.89846 -35.45729 -33.71445 -32.64869 -31.45123 -29.92515 -29.54015 -28.09806 -26.53385 -25.29458 -23.16799 -22.90978 -21.95976 -20.83483 -19.57425 -19.36114 -17.46484 -16.62099 -16.35689 -16.20723 -15.41167 -15.12106 -14.74791 -14.58551 -14.16900 -13.85582 -13.55486 -13.13137 -12.85967 -12.75373 -12.67425 -12.57818 -12.37880 -11.91246 -11.80797 -11.66363 -11.53515 -11.45191 -11.30461 -11.11512 -11.00913 -10.73974 -10.58263 -10.45413 -10.31456 -10.23400 -10.00513 -9.64048 -9.59913 -9.22553 -8.32466 -8.14257 -7.54152 -7.27302 -6.74747 -4.33944 2.40969 2.84114 3.13928 3.23186 3.25337 3.59478 4.02388 4.05092 4.23554 4.74389 4.87209 4.90194 5.04122 5.15574 5.21575 5.33403 5.39963 5.45902 5.52961 5.62422 5.66244 5.76003 5.85591 5.96763 5.98312 6.04541 6.16889 6.21121 6.29646 6.32491 6.34713 6.49723 6.65280 6.79947 6.98906 7.06420 7.11452 7.16195 7.24456 7.35258 7.50783 7.66710 7.92446 8.04781 8.22587 8.49946 8.74068 8.88529 8.96193 9.51438 10.22141 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.004661 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.180707 B = 6006.227833 C = 7462.372042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.380 6.380 4 C 0.054 3.946 5 C 0.160 3.840 6 H 0.094 0.906 7 N -0.739 5.739 8 C 0.566 3.434 9 O -0.534 6.534 10 C -0.258 4.258 11 C -0.057 4.057 12 C -0.244 4.244 13 C -0.096 4.096 14 C -0.148 4.148 15 C 0.149 3.851 16 C -0.423 4.423 17 H 0.110 0.890 18 C 0.070 3.930 19 N -0.796 5.796 20 Si 0.913 3.087 21 H -0.257 1.257 22 H -0.275 1.275 23 H -0.275 1.275 24 C -0.100 4.100 25 C -0.143 4.143 26 C -0.139 4.139 27 H 0.062 0.938 28 H 0.064 0.936 29 H 0.067 0.933 30 H 0.046 0.954 31 H 0.044 0.956 32 H 0.052 0.948 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.280 0.720 40 H 0.074 0.926 41 H 0.052 0.948 42 H 0.051 0.949 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.068 0.932 46 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.802 -13.381 5.962 15.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.020 4.020 3 O -0.299 6.299 4 C -0.023 4.023 5 C 0.054 3.946 6 H 0.112 0.888 7 N -0.393 5.393 8 C 0.360 3.640 9 O -0.413 6.413 10 C -0.263 4.263 11 C -0.076 4.076 12 C -0.264 4.264 13 C -0.115 4.115 14 C -0.167 4.167 15 C 0.145 3.855 16 C -0.451 4.451 17 H 0.128 0.872 18 C -0.148 4.148 19 N -0.422 5.422 20 Si 0.738 3.262 21 H -0.180 1.180 22 H -0.200 1.200 23 H -0.200 1.200 24 C -0.120 4.120 25 C -0.201 4.201 26 C -0.197 4.197 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.071 0.929 33 H 0.078 0.922 34 H 0.230 0.770 35 H 0.108 0.892 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.131 0.869 39 H 0.091 0.909 40 H 0.092 0.908 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.087 0.913 46 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -3.302 -12.628 6.396 14.536 hybrid contribution 0.121 0.048 0.078 0.152 sum -3.182 -12.580 6.474 14.501 Atomic orbital electron populations 1.21730 0.93865 1.01941 1.03292 1.22426 0.95555 0.84243 0.99763 1.87945 1.20876 1.25782 1.95336 1.22897 0.81640 0.97285 1.00518 1.20889 0.99600 0.88852 0.85244 0.88809 1.45996 1.37835 1.31257 1.24250 1.18323 0.81812 0.78744 0.85138 1.90656 1.29200 1.61679 1.59763 1.19524 1.05482 1.03874 0.97424 1.20680 0.95324 0.97030 0.94603 1.20285 1.06257 0.99997 0.99825 1.20792 0.96894 0.95440 0.98373 1.21316 0.99726 1.00695 0.94939 1.17480 0.89220 0.88653 0.90150 1.20281 1.10696 0.90841 1.23286 0.87186 1.26110 0.96591 0.97924 0.94160 1.69726 1.29766 1.07300 1.35370 0.86160 0.81645 0.79282 0.79112 1.18031 1.20008 1.20028 1.21427 1.00849 0.96063 0.93642 1.21855 1.01113 0.99881 0.97246 1.21878 1.01392 0.94655 1.01735 0.91900 0.91704 0.91420 0.93590 0.93743 0.92933 0.92155 0.77039 0.89224 0.89180 0.89170 0.86886 0.90912 0.90755 0.92922 0.92971 0.93012 0.92302 0.91329 0.94484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 10.28 37.15 0.38 -0.89 16 2 C 0.06 0.54 6.66 37.15 0.25 0.78 16 3 O -0.38 -4.70 9.26 -35.23 -0.33 -5.03 16 4 C 0.05 0.65 5.07 37.16 0.19 0.83 16 5 C 0.16 2.45 2.25 -67.93 -0.15 2.30 16 6 H 0.09 1.56 7.58 -51.93 -0.39 1.16 16 7 N -0.74 -13.31 4.94 -54.88 -0.27 -13.58 16 8 C 0.57 12.81 6.20 -12.51 -0.08 12.74 16 9 O -0.53 -13.34 10.67 5.28 0.06 -13.29 16 10 C -0.26 -6.30 5.92 -104.37 -0.62 -6.92 16 11 C -0.06 -1.24 9.52 -39.22 -0.37 -1.62 16 12 C -0.24 -5.26 10.03 -39.37 -0.39 -5.66 16 13 C -0.10 -2.19 10.01 -39.60 -0.40 -2.59 16 14 C -0.15 -3.77 8.62 -38.88 -0.34 -4.10 16 15 C 0.15 3.99 5.47 -106.54 -0.58 3.41 16 16 C -0.42 -11.56 7.74 -37.82 -0.29 -11.85 16 17 H 0.11 3.11 5.79 -52.49 -0.30 2.81 16 18 C 0.07 1.81 5.24 -17.30 -0.09 1.71 16 19 N -0.80 -20.85 11.34 55.56 0.63 -20.22 16 20 Si 0.91 19.82 29.57 -169.99 -5.03 14.79 16 21 H -0.26 -5.65 7.11 56.52 0.40 -5.25 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 C -0.10 -1.52 2.45 -90.62 -0.22 -1.74 16 25 C -0.14 -1.75 8.84 37.16 0.33 -1.43 16 26 C -0.14 -2.53 7.76 37.16 0.29 -2.25 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.06 0.62 6.62 -51.93 -0.34 0.27 16 34 H 0.39 6.61 6.44 -40.82 -0.26 6.35 16 35 H 0.09 1.65 6.42 -52.48 -0.34 1.31 16 36 H 0.09 1.69 8.06 -52.49 -0.42 1.27 16 37 H 0.09 1.81 8.06 -52.48 -0.42 1.39 16 38 H 0.11 2.95 6.81 -52.49 -0.36 2.59 16 39 H 0.28 6.69 8.29 -40.82 -0.34 6.35 16 40 H 0.07 1.19 7.66 -51.93 -0.40 0.79 16 41 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.05 0.56 6.35 -51.93 -0.33 0.23 16 44 H 0.06 1.12 7.73 -51.93 -0.40 0.72 16 45 H 0.07 1.50 5.69 -51.93 -0.30 1.20 16 46 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 363.93 15.07 5.48 5.48 Total: -1.00 -28.98 363.93 -8.76 -37.75 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: -7.21 Total: 11.36 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: -2.10 Total: -17.26 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 0.36 Total: -33.80 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.27 Total: -18.32 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.03 Total: 14.79 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -28.98 -8.76 -37.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601526003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.258 kcal (2) G-P(sol) polarization free energy of solvation -28.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds