Wall clock time and date at job start Tue Mar 31 2020 09:53:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42901 * 109.46829 * 2 1 4 4 C 1.42908 * 113.99876 * 180.02562 * 3 2 1 5 5 C 1.52998 * 109.46861 * 180.02562 * 4 3 2 6 6 H 1.09001 * 109.46912 * 174.73927 * 5 4 3 7 7 N 1.46501 * 109.47228 * 294.73502 * 5 4 3 8 8 C 1.34778 * 120.00238 * 204.99994 * 7 5 4 9 9 O 1.21602 * 119.99940 * 0.02562 * 8 7 5 10 10 C 1.47434 * 120.00065 * 179.72778 * 8 7 5 11 11 C 1.39227 * 120.27801 * 355.54320 * 10 8 7 12 12 C 1.38222 * 120.08904 * 180.02562 * 11 10 8 13 13 C 1.38829 * 120.67448 * 0.02562 * 12 11 10 14 14 C 1.37598 * 120.57404 * 0.02562 * 13 12 11 15 15 C 1.40715 * 119.87644 * 359.67670 * 14 13 12 16 16 C 1.40884 * 120.32585 * 180.29622 * 15 14 13 17 17 H 1.07999 * 119.99949 * 216.84893 * 16 15 14 18 18 C 1.40273 * 120.00060 * 36.84736 * 16 15 14 19 19 N 1.30633 * 120.00221 * 9.21106 * 18 16 15 20 20 Si 1.86801 * 120.00014 * 189.21493 * 18 16 15 21 21 H 1.48501 * 109.47143 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47256 * 119.99985 * 20 18 16 23 23 H 1.48502 * 109.46782 * 239.99862 * 20 18 16 24 24 C 1.52998 * 109.47415 * 54.73874 * 5 4 3 25 25 C 1.53000 * 109.46921 * 56.92950 * 24 5 4 26 26 C 1.53003 * 109.47370 * 176.92807 * 24 5 4 27 27 H 1.08995 * 109.47399 * 299.99473 * 1 2 3 28 28 H 1.09000 * 109.47338 * 59.99932 * 1 2 3 29 29 H 1.09007 * 109.47148 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47475 * 240.00427 * 2 1 3 31 31 H 1.08998 * 109.47615 * 120.00537 * 2 1 3 32 32 H 1.09000 * 109.47278 * 60.00143 * 4 3 2 33 33 H 1.09001 * 109.46764 * 299.99943 * 4 3 2 34 34 H 0.97000 * 119.99962 * 25.00509 * 7 5 4 35 35 H 1.08003 * 119.96068 * 0.02562 * 11 10 8 36 36 H 1.07997 * 119.66562 * 180.02562 * 12 11 10 37 37 H 1.08005 * 119.71078 * 179.97438 * 13 12 11 38 38 H 1.07996 * 120.06153 * 179.97438 * 14 13 12 39 39 H 0.96991 * 119.99841 * 180.02562 * 19 18 16 40 40 H 1.08998 * 109.47106 * 296.92768 * 24 5 4 41 41 H 1.08993 * 109.47520 * 62.56596 * 25 24 5 42 42 H 1.09000 * 109.47283 * 182.57271 * 25 24 5 43 43 H 1.09004 * 109.47276 * 302.56261 * 25 24 5 44 44 H 1.08998 * 109.46973 * 300.00042 * 26 24 5 45 45 H 1.09002 * 109.46756 * 59.99901 * 26 24 5 46 46 H 1.08994 * 109.46988 * 180.02562 * 26 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.4308 1.4602 -0.0006 5 6 3.8252 2.9385 0.0001 6 1 4.9077 3.0256 0.0939 7 7 3.3921 3.5601 -1.2538 8 6 4.0255 4.6560 -1.7167 9 8 4.9567 5.1287 -1.0937 10 6 3.5935 5.2780 -2.9816 11 6 2.5942 4.6862 -3.7495 12 6 2.1925 5.2724 -4.9351 13 6 2.7766 6.4525 -5.3752 14 6 3.7672 7.0603 -4.6386 15 6 4.1899 6.4873 -3.4249 16 6 5.1991 7.1050 -2.6601 17 1 5.9221 6.5012 -2.1318 18 6 5.2648 8.5041 -2.5847 19 7 4.2937 9.2308 -3.0699 20 14 6.7411 9.3284 -1.7907 21 1 7.6951 8.2909 -1.3229 22 1 7.4113 10.2063 -2.7834 23 1 6.2903 10.1432 -0.6339 24 6 3.1526 3.6453 1.1786 25 6 3.5449 2.9479 2.4828 26 6 3.6072 5.1055 1.2245 27 1 -0.3634 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 3.8333 0.9768 -0.8908 33 1 3.8339 0.9765 0.8892 34 1 2.6495 3.1829 -1.7509 35 1 2.1321 3.7679 -3.4184 36 1 1.4165 4.8077 -5.5251 37 1 2.4510 6.8969 -6.3042 38 1 4.2161 7.9779 -4.9890 39 1 4.3394 10.1982 -3.0181 40 1 2.0703 3.6053 1.0566 41 1 4.6222 3.0275 2.6276 42 1 3.0299 3.4227 3.3179 43 1 3.2618 1.8965 2.4320 44 1 4.6896 5.1454 1.3466 45 1 3.3277 5.6023 0.2954 46 1 3.1284 5.6088 2.0644 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601526003.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:53:36 Heat of formation + Delta-G solvation = -94.592055 kcal Electronic energy + Delta-G solvation = -25947.376811 eV Core-core repulsion = 22414.581413 eV Total energy + Delta-G solvation = -3532.795399 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.04222 -39.44686 -38.44853 -36.84196 -35.58291 -34.18573 -32.29831 -31.74663 -31.27011 -29.34522 -27.81442 -27.12195 -24.54234 -23.63623 -23.54205 -22.65371 -21.06941 -20.85989 -19.31523 -17.97417 -17.66508 -17.25568 -17.02833 -16.58241 -16.06800 -15.97512 -15.71773 -15.57196 -14.90955 -14.64810 -14.48589 -14.17870 -13.90322 -13.70018 -13.58961 -13.38611 -13.24985 -13.01090 -12.86672 -12.84007 -12.67005 -12.41247 -12.37615 -12.27568 -12.10991 -11.93152 -11.88778 -11.54587 -11.52606 -11.41408 -11.11788 -10.47046 -10.11405 -9.74100 -9.36585 -9.16443 -8.64864 -6.33288 0.55983 1.02048 1.33637 1.47307 1.49798 2.22540 2.40223 2.54513 2.79146 2.85341 3.72768 3.77213 3.96091 4.16281 4.24770 4.33004 4.33967 4.40568 4.44363 4.52461 4.52612 4.58543 4.59401 4.71671 4.81151 4.86119 4.94069 4.98070 5.06010 5.10519 5.11361 5.12137 5.25770 5.27331 5.34307 5.37074 5.47695 5.55996 5.64469 5.81878 5.85358 6.07661 6.14461 6.32449 6.37474 6.70048 6.86617 6.96908 7.07289 7.78813 8.34323 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.014992 B = 0.004661 C = 0.003751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1867.180707 B = 6006.227833 C = 7462.372042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.051 3.949 3 O -0.399 6.399 4 C 0.064 3.936 5 C 0.154 3.846 6 H 0.079 0.921 7 N -0.722 5.722 8 C 0.563 3.437 9 O -0.565 6.565 10 C -0.276 4.276 11 C -0.057 4.057 12 C -0.235 4.235 13 C -0.094 4.094 14 C -0.176 4.176 15 C 0.119 3.881 16 C -0.460 4.460 17 H 0.088 0.912 18 C 0.032 3.968 19 N -0.828 5.828 20 Si 0.976 3.024 21 H -0.268 1.268 22 H -0.257 1.257 23 H -0.269 1.269 24 C -0.093 4.093 25 C -0.135 4.135 26 C -0.133 4.133 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.088 0.912 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.087 0.913 34 H 0.403 0.597 35 H 0.127 0.873 36 H 0.131 0.869 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.287 0.713 40 H 0.070 0.930 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.025 0.975 46 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 -15.964 6.415 17.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.319 6.319 4 C -0.013 4.013 5 C 0.049 3.951 6 H 0.097 0.903 7 N -0.376 5.376 8 C 0.356 3.644 9 O -0.446 6.446 10 C -0.281 4.281 11 C -0.075 4.075 12 C -0.254 4.254 13 C -0.112 4.112 14 C -0.196 4.196 15 C 0.115 3.885 16 C -0.489 4.489 17 H 0.106 0.894 18 C -0.182 4.182 19 N -0.455 5.455 20 Si 0.797 3.203 21 H -0.192 1.192 22 H -0.181 1.181 23 H -0.194 1.194 24 C -0.112 4.112 25 C -0.193 4.193 26 C -0.190 4.190 27 H 0.075 0.925 28 H 0.073 0.927 29 H 0.107 0.893 30 H 0.072 0.928 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.239 0.761 35 H 0.145 0.855 36 H 0.149 0.851 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.092 0.908 44 H 0.061 0.939 45 H 0.044 0.956 46 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.754 -15.249 6.842 17.377 hybrid contribution 0.397 0.677 -0.108 0.792 sum -4.357 -14.572 6.734 16.634 Atomic orbital electron populations 1.21752 0.93343 1.03125 1.02492 1.22638 0.95986 0.82938 1.00970 1.87918 1.20618 1.27847 1.95565 1.22755 0.82079 0.94305 1.02177 1.21081 0.98878 0.91247 0.83848 0.90312 1.45806 1.37081 1.29661 1.25004 1.18253 0.81778 0.79641 0.84768 1.90638 1.30688 1.62856 1.60390 1.19958 1.06007 1.03510 0.98656 1.21064 0.94177 0.98044 0.94244 1.20785 1.06011 0.99010 0.99626 1.21160 0.95531 0.95630 0.98888 1.21263 1.01705 1.01053 0.95540 1.17842 0.89866 0.90048 0.90726 1.20215 1.11866 0.91789 1.25068 0.89417 1.26766 0.98928 0.97930 0.94540 1.69755 1.31072 1.07749 1.36924 0.85255 0.78300 0.78081 0.78637 1.19188 1.18087 1.19410 1.21352 1.00321 0.94139 0.95418 1.21789 1.01361 1.00781 0.95373 1.21779 1.00404 0.96955 0.99874 0.92468 0.92716 0.89285 0.92756 0.92112 0.92195 0.89559 0.76083 0.85511 0.85139 0.86316 0.88658 0.90269 0.91167 0.92721 0.92163 0.90826 0.93914 0.95584 0.93259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 10.28 71.98 0.74 -1.36 16 2 C 0.05 0.78 6.66 71.98 0.48 1.26 16 3 O -0.40 -8.67 9.26 -148.98 -1.38 -10.05 16 4 C 0.06 1.35 5.07 71.98 0.37 1.72 16 5 C 0.15 4.58 2.25 44.99 0.10 4.69 16 6 H 0.08 2.62 7.58 -2.39 -0.02 2.60 16 7 N -0.72 -25.68 4.94 -445.80 -2.20 -27.89 16 8 C 0.56 26.23 6.20 86.67 0.54 26.77 16 9 O -0.56 -29.81 10.67 -4.04 -0.04 -29.85 16 10 C -0.28 -13.75 5.92 -19.70 -0.12 -13.87 16 11 C -0.06 -2.35 9.52 22.50 0.21 -2.14 16 12 C -0.24 -9.48 10.03 22.41 0.22 -9.26 16 13 C -0.09 -4.16 10.01 22.26 0.22 -3.94 16 14 C -0.18 -9.28 8.62 22.72 0.20 -9.08 16 15 C 0.12 6.65 5.47 -21.11 -0.12 6.53 16 16 C -0.46 -26.79 7.74 23.41 0.18 -26.61 16 17 H 0.09 5.36 5.79 -2.91 -0.02 5.34 16 18 C 0.03 1.76 5.24 85.37 0.45 2.21 16 19 N -0.83 -45.37 11.34 21.88 0.25 -45.12 16 20 Si 0.98 42.61 29.57 68.60 2.03 44.64 16 21 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 22 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 23 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 24 C -0.09 -2.73 2.45 -10.79 -0.03 -2.76 16 25 C -0.14 -2.98 8.84 71.98 0.64 -2.35 16 26 C -0.13 -4.96 7.76 71.98 0.56 -4.40 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.09 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.05 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.09 1.42 6.62 -2.39 -0.02 1.41 16 34 H 0.40 12.82 6.44 -92.71 -0.60 12.22 16 35 H 0.13 4.24 6.42 -2.91 -0.02 4.22 16 36 H 0.13 4.24 8.06 -2.91 -0.02 4.22 16 37 H 0.12 4.51 8.06 -2.91 -0.02 4.49 16 38 H 0.10 5.24 6.81 -2.91 -0.02 5.22 16 39 H 0.29 14.22 8.29 -92.72 -0.77 13.46 16 40 H 0.07 2.15 7.66 -2.39 -0.02 2.13 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.07 1.32 6.35 -2.39 -0.02 1.31 16 44 H 0.04 1.69 7.73 -2.39 -0.02 1.67 16 45 H 0.02 1.17 5.69 -2.39 -0.01 1.16 16 46 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -67.46 363.93 3.68 -63.78 By element: Atomic # 1 Polarization: 36.69 SS G_CDS: 0.38 Total: 37.07 kcal Atomic # 6 Polarization: -37.23 SS G_CDS: 4.65 Total: -32.58 kcal Atomic # 7 Polarization: -71.06 SS G_CDS: -1.95 Total: -73.01 kcal Atomic # 8 Polarization: -38.48 SS G_CDS: -1.42 Total: -39.90 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -67.46 3.68 -63.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601526003.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.809 kcal (2) G-P(sol) polarization free energy of solvation -67.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds