Wall clock time and date at job start Tue Mar 31 2020 08:42:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46896 * 109.46927 * 2 1 4 4 C 1.46901 * 111.00640 * 294.59409 * 3 2 1 5 5 C 1.50696 * 109.47045 * 74.38021 * 4 3 2 6 6 H 1.08000 * 119.99933 * 5.27779 * 5 4 3 7 7 C 1.37874 * 119.99890 * 185.28514 * 5 4 3 8 8 N 1.31515 * 120.00001 * 359.97438 * 7 5 4 9 9 Si 1.86808 * 119.99995 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47048 * 89.99746 * 9 7 5 11 11 H 1.48503 * 109.47084 * 209.99402 * 9 7 5 12 12 H 1.48493 * 109.46990 * 329.99536 * 9 7 5 13 13 C 1.46902 * 110.99906 * 170.63588 * 3 2 1 14 14 H 1.09007 * 110.26762 * 170.60037 * 13 3 2 15 15 C 1.54339 * 110.30501 * 292.67408 * 13 3 2 16 16 C 1.54336 * 102.38722 * 92.64164 * 15 13 3 17 17 C 1.51398 * 105.17724 * 26.37775 * 16 15 13 18 18 C 1.38543 * 130.28343 * 162.79279 * 17 16 15 19 19 C 1.38402 * 120.24602 * 180.02562 * 18 17 16 20 20 O 1.35993 * 120.11079 * 180.02562 * 19 18 17 21 21 C 1.42903 * 116.99801 * 359.97438 * 20 19 18 22 22 C 1.39192 * 119.78196 * 359.97438 * 19 18 17 23 23 O 1.35998 * 120.10807 * 179.97438 * 22 19 18 24 24 C 1.42903 * 116.99506 * 180.02562 * 23 22 19 25 25 C 1.38393 * 119.77944 * 0.02562 * 22 19 18 26 26 C 1.38238 * 109.74567 * 342.80124 * 17 16 15 27 27 H 1.08997 * 109.47244 * 310.31944 * 1 2 3 28 28 H 1.09004 * 109.47522 * 70.32026 * 1 2 3 29 29 H 1.09005 * 109.47061 * 190.32422 * 1 2 3 30 30 H 1.09006 * 109.46884 * 240.01026 * 2 1 3 31 31 H 1.08995 * 109.47433 * 120.00659 * 2 1 3 32 32 H 1.09001 * 109.47499 * 194.38503 * 4 3 2 33 33 H 1.09000 * 109.46552 * 314.38178 * 4 3 2 34 34 H 0.97007 * 119.99633 * 180.02562 * 8 7 5 35 35 H 1.08998 * 110.82316 * 210.86300 * 15 13 3 36 36 H 1.09003 * 110.82381 * 334.21937 * 15 13 3 37 37 H 1.09005 * 110.30389 * 145.30391 * 16 15 13 38 38 H 1.09005 * 110.30599 * 267.45514 * 16 15 13 39 39 H 1.07994 * 119.87751 * 0.02562 * 18 17 16 40 40 H 1.09005 * 109.47076 * 180.02562 * 21 20 19 41 41 H 1.09001 * 109.47446 * 299.99839 * 21 20 19 42 42 H 1.08998 * 109.47202 * 60.00050 * 21 20 19 43 43 H 1.09003 * 109.46441 * 180.02562 * 24 23 22 44 44 H 1.09005 * 109.47054 * 299.99665 * 24 23 22 45 45 H 1.08991 * 109.47369 * 60.00234 * 24 23 22 46 46 H 1.08002 * 119.88240 * 180.02562 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6570 2.0717 -1.2470 5 6 0.1871 2.4035 -1.2286 6 1 -0.3993 2.2089 -0.3428 7 6 -0.4090 2.9553 -2.3426 8 7 0.3052 3.1926 -3.4211 9 14 -2.2312 3.3660 -2.3201 10 1 -2.4191 4.7575 -1.8365 11 1 -2.7841 3.2401 -3.6926 12 1 -2.9391 2.4270 -1.4132 13 6 3.4708 1.4303 0.2231 14 1 3.8471 2.4397 0.0569 15 6 3.8075 0.9623 1.6548 16 6 4.0671 -0.5462 1.4576 17 6 4.5183 -0.6860 0.0192 18 6 5.1766 -1.7265 -0.6160 19 6 5.4939 -1.6335 -1.9599 20 8 6.1397 -2.6567 -2.5808 21 6 6.4615 -3.7989 -1.7847 22 6 5.1488 -0.4898 -2.6743 23 8 5.4578 -0.3912 -3.9950 24 6 5.0730 0.8120 -4.6632 25 6 4.4912 0.5471 -2.0358 26 6 4.1758 0.4499 -0.6902 27 1 -0.3633 0.6649 0.7835 28 1 -0.3634 0.3461 -0.9676 29 1 -0.3633 -1.0111 0.1842 30 1 1.8933 -0.5137 -0.8901 31 1 1.8933 -0.5139 0.8899 32 1 2.2359 2.9908 -1.3372 33 1 1.8722 1.4220 -2.0953 34 1 -0.1142 3.5812 -4.2048 35 1 4.7010 1.4639 2.0264 36 1 2.9643 1.1291 2.3253 37 1 4.8507 -0.8868 2.1346 38 1 3.1506 -1.1126 1.6233 39 1 5.4432 -2.6133 -0.0604 40 1 6.9735 -4.5384 -2.4005 41 1 7.1116 -3.4978 -0.9632 42 1 5.5453 -4.2317 -1.3831 43 1 5.3778 0.7604 -5.7084 44 1 3.9908 0.9292 -4.6060 45 1 5.5565 1.6637 -4.1849 46 1 4.2223 1.4351 -2.5885 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602438172.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:48 Heat of formation + Delta-G solvation = -50.309946 kcal Electronic energy + Delta-G solvation = -26546.405466 eV Core-core repulsion = 23015.530283 eV Total energy + Delta-G solvation = -3530.875183 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 4.15 seconds Orbital eigenvalues (eV) -42.06062 -40.29203 -39.43909 -37.38143 -35.18745 -34.09055 -32.28417 -30.72185 -30.34644 -28.96851 -28.13137 -27.59572 -26.73511 -24.29757 -23.13470 -22.60704 -21.81269 -20.89102 -19.10736 -18.43785 -17.83662 -17.82678 -17.19730 -16.94850 -16.48494 -16.19427 -15.92040 -15.66777 -15.50070 -15.39254 -14.67199 -14.54970 -14.21149 -13.92930 -13.55572 -13.29714 -13.13462 -13.00125 -12.93423 -12.85382 -12.78731 -12.57894 -12.47806 -12.26060 -12.17306 -12.09934 -12.00780 -11.91934 -11.76023 -11.39061 -11.09169 -10.88494 -10.49634 -9.67430 -9.06711 -8.66639 -8.13796 -6.17829 0.25466 0.36596 1.41441 1.41700 1.52544 2.27536 2.33104 2.42226 2.62569 3.18226 3.32913 3.42309 3.68364 3.95277 4.08322 4.14138 4.23297 4.26061 4.34344 4.36410 4.39973 4.43087 4.44925 4.53865 4.60408 4.61423 4.73738 4.75045 4.83668 4.92025 4.97675 4.99688 5.12049 5.14695 5.15795 5.27565 5.32266 5.39498 5.47784 5.65172 5.68692 5.74472 5.76001 6.04441 6.14600 6.41544 6.56918 6.69363 6.94394 7.46488 8.96691 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015021 B = 0.004959 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.553859 B = 5644.796901 C = 6684.198140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.066 3.934 3 N -0.518 5.518 4 C 0.213 3.787 5 C -0.504 4.504 6 H 0.077 0.923 7 C -0.002 4.002 8 N -0.938 5.938 9 Si 0.958 3.042 10 H -0.275 1.275 11 H -0.289 1.289 12 H -0.261 1.261 13 C 0.110 3.890 14 H 0.064 0.936 15 C -0.101 4.101 16 C -0.074 4.074 17 C -0.085 4.085 18 C -0.157 4.157 19 C 0.089 3.911 20 O -0.330 6.330 21 C 0.017 3.983 22 C 0.071 3.929 23 O -0.325 6.325 24 C 0.028 3.972 25 C -0.161 4.161 26 C -0.129 4.129 27 H 0.055 0.945 28 H 0.048 0.952 29 H 0.058 0.942 30 H -0.004 1.004 31 H 0.096 0.904 32 H -0.010 1.010 33 H -0.036 1.036 34 H 0.259 0.741 35 H 0.092 0.908 36 H 0.092 0.908 37 H 0.106 0.894 38 H 0.092 0.908 39 H 0.167 0.833 40 H 0.118 0.882 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.128 0.872 44 H 0.036 0.964 45 H 0.057 0.943 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 -12.042 8.233 18.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.062 4.062 3 N -0.240 5.240 4 C 0.087 3.913 5 C -0.542 4.542 6 H 0.095 0.905 7 C -0.199 4.199 8 N -0.580 5.580 9 Si 0.783 3.217 10 H -0.201 1.201 11 H -0.215 1.215 12 H -0.185 1.185 13 C 0.002 3.998 14 H 0.082 0.918 15 C -0.139 4.139 16 C -0.110 4.110 17 C -0.086 4.086 18 C -0.175 4.175 19 C 0.044 3.956 20 O -0.245 6.245 21 C -0.077 4.077 22 C 0.025 3.975 23 O -0.239 6.239 24 C -0.067 4.067 25 C -0.181 4.181 26 C -0.131 4.131 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.014 0.986 31 H 0.114 0.886 32 H 0.008 0.992 33 H -0.018 1.018 34 H 0.068 0.932 35 H 0.110 0.890 36 H 0.110 0.890 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.184 0.816 40 H 0.136 0.864 41 H 0.088 0.912 42 H 0.083 0.917 43 H 0.146 0.854 44 H 0.055 0.945 45 H 0.076 0.924 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 11.711 -11.870 8.144 18.557 hybrid contribution -0.682 0.592 -1.659 1.889 sum 11.029 -11.277 6.485 17.055 Atomic orbital electron populations 1.21998 0.95419 0.99990 1.02499 1.22087 0.95986 0.88803 0.99298 1.62551 1.09625 1.15237 1.36603 1.19339 0.95592 0.91196 0.85211 1.21688 0.94732 1.38590 0.99229 0.90530 1.25826 1.02569 0.96199 0.95276 1.70100 1.37734 1.45840 1.04284 0.85543 0.80116 0.78862 0.77139 1.20098 1.21474 1.18495 1.21462 0.87150 0.96451 0.94784 0.91788 1.22319 1.02800 0.95050 0.93686 1.21246 1.02253 0.96968 0.90531 1.20624 0.97466 0.92809 0.97750 1.20695 1.03741 1.01278 0.91793 1.18170 0.98471 0.87664 0.91311 1.86134 1.72450 1.26381 1.39514 1.23380 1.01393 0.85663 0.97289 1.18335 1.00959 0.93978 0.84180 1.86060 1.77200 1.41181 1.19476 1.23163 0.99640 0.85276 0.98614 1.20603 1.02820 0.98726 0.95957 1.21196 0.99310 0.99258 0.93370 0.92644 0.93287 0.92356 0.98571 0.88622 0.99196 1.01822 0.93193 0.88964 0.88958 0.87587 0.88993 0.81556 0.86365 0.91162 0.91735 0.85392 0.94503 0.92401 0.87166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.58 8.40 71.98 0.60 -4.98 16 2 C 0.07 2.54 4.37 86.30 0.38 2.92 16 3 N -0.52 -22.01 4.47 -875.93 -3.92 -25.93 16 4 C 0.21 11.36 4.27 85.56 0.37 11.72 16 5 C -0.50 -28.05 6.54 25.60 0.17 -27.88 16 6 H 0.08 4.12 5.68 -2.91 -0.02 4.10 16 7 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 8 N -0.94 -56.90 13.29 21.45 0.28 -56.62 16 9 Si 0.96 44.56 29.54 68.60 2.03 46.59 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 12 H -0.26 -11.52 7.11 99.48 0.71 -10.82 16 13 C 0.11 3.98 3.06 44.85 0.14 4.11 16 14 H 0.06 2.48 7.80 -2.38 -0.02 2.46 16 15 C -0.10 -2.55 6.32 31.50 0.20 -2.35 16 16 C -0.07 -1.61 5.98 30.52 0.18 -1.43 16 17 C -0.09 -2.46 5.59 -19.57 -0.11 -2.57 16 18 C -0.16 -4.18 9.04 22.38 0.20 -3.98 16 19 C 0.09 2.90 6.70 22.54 0.15 3.05 16 20 O -0.33 -9.65 10.29 -79.71 -0.82 -10.47 16 21 C 0.02 0.28 9.81 113.37 1.11 1.39 16 22 C 0.07 2.66 6.70 22.54 0.15 2.81 16 23 O -0.32 -12.04 10.29 -79.76 -0.82 -12.86 16 24 C 0.03 0.88 9.81 113.37 1.11 1.99 16 25 C -0.16 -6.40 8.31 22.38 0.19 -6.21 16 26 C -0.13 -4.65 4.00 -19.57 -0.08 -4.73 16 27 H 0.05 2.17 7.28 -2.39 -0.02 2.15 16 28 H 0.05 2.30 5.86 -2.38 -0.01 2.29 16 29 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 30 H 0.00 -0.18 7.06 -2.38 -0.02 -0.19 16 31 H 0.10 2.99 4.44 -2.39 -0.01 2.98 16 32 H -0.01 -0.59 7.74 -2.39 -0.02 -0.60 16 33 H -0.04 -2.15 7.34 -2.39 -0.02 -2.17 16 34 H 0.26 14.95 8.31 -92.70 -0.77 14.18 16 35 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 36 H 0.09 2.28 8.08 -2.39 -0.02 2.26 16 37 H 0.11 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.09 1.92 5.94 -2.38 -0.01 1.91 16 39 H 0.17 3.06 6.29 -2.91 -0.02 3.04 16 40 H 0.12 1.43 8.14 -2.38 -0.02 1.42 16 41 H 0.07 0.93 7.66 -2.39 -0.02 0.91 16 42 H 0.06 0.94 7.66 -2.39 -0.02 0.92 16 43 H 0.13 3.12 8.14 -2.39 -0.02 3.10 16 44 H 0.04 1.33 7.66 -2.38 -0.02 1.32 16 45 H 0.06 1.73 7.66 -2.39 -0.02 1.72 16 46 H 0.11 4.78 6.29 -2.91 -0.02 4.76 16 Total: -1.00 -71.29 352.99 2.96 -68.33 By element: Atomic # 1 Polarization: 15.75 SS G_CDS: 0.98 Total: 16.73 kcal Atomic # 6 Polarization: -31.00 SS G_CDS: 5.22 Total: -25.77 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -3.63 Total: -82.54 kcal Atomic # 8 Polarization: -21.69 SS G_CDS: -1.64 Total: -23.33 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -71.29 2.96 -68.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438172.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.022 kcal (2) G-P(sol) polarization free energy of solvation -71.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.15 seconds