Wall clock time and date at job start Tue Mar 31 2020 08:43:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46897 * 109.47232 * 2 1 4 4 C 1.46901 * 111.00206 * 199.36011 * 3 2 1 5 5 C 1.50695 * 109.46801 * 62.25723 * 4 3 2 6 6 H 1.07999 * 120.00638 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99877 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00022 * 180.02562 * 7 5 4 9 9 Si 1.86801 * 119.99786 * 359.97438 * 7 5 4 10 10 H 1.48494 * 109.47108 * 90.00040 * 9 7 5 11 11 H 1.48501 * 109.46926 * 210.00108 * 9 7 5 12 12 H 1.48506 * 109.47154 * 330.00217 * 9 7 5 13 13 C 1.46898 * 111.00193 * 75.40247 * 3 2 1 14 14 H 1.09002 * 110.27193 * 316.90444 * 13 3 2 15 15 C 1.54343 * 110.30492 * 194.82627 * 13 3 2 16 16 C 1.54336 * 102.39210 * 267.35297 * 15 13 3 17 17 C 1.51400 * 105.17509 * 333.62762 * 16 15 13 18 18 C 1.38544 * 130.27591 * 196.92124 * 17 16 15 19 19 C 1.38410 * 120.24329 * 179.85624 * 18 17 16 20 20 O 1.35993 * 120.11146 * 180.20904 * 19 18 17 21 21 C 1.42911 * 116.99684 * 0.23766 * 20 19 18 22 22 C 1.39191 * 119.77721 * 0.44754 * 19 18 17 23 23 O 1.35992 * 120.10433 * 179.76857 * 22 19 18 24 24 C 1.42902 * 116.99848 * 180.02562 * 23 22 19 25 25 C 1.38396 * 119.78440 * 359.77923 * 22 19 18 26 26 C 1.38226 * 109.74626 * 17.20169 * 17 16 15 27 27 H 1.08998 * 109.47717 * 294.48259 * 1 2 3 28 28 H 1.08996 * 109.47252 * 54.48802 * 1 2 3 29 29 H 1.09006 * 109.47382 * 174.48862 * 1 2 3 30 30 H 1.08997 * 109.47397 * 239.99827 * 2 1 3 31 31 H 1.09007 * 109.47188 * 119.99417 * 2 1 3 32 32 H 1.08997 * 109.46918 * 182.25494 * 4 3 2 33 33 H 1.09001 * 109.47106 * 302.25475 * 4 3 2 34 34 H 0.97002 * 119.99709 * 180.02562 * 8 7 5 35 35 H 1.09005 * 110.82063 * 149.12759 * 15 13 3 36 36 H 1.08992 * 110.98780 * 25.65400 * 15 13 3 37 37 H 1.09003 * 110.30288 * 214.70381 * 16 15 13 38 38 H 1.09004 * 110.38620 * 92.59829 * 16 15 13 39 39 H 1.07999 * 119.88412 * 359.97438 * 18 17 16 40 40 H 1.08998 * 109.46313 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.46893 * 299.99871 * 21 20 19 42 42 H 1.09002 * 109.46915 * 60.00088 * 21 20 19 43 43 H 1.08997 * 109.47311 * 59.99257 * 24 23 22 44 44 H 1.09003 * 109.47327 * 179.97438 * 24 23 22 45 45 H 1.09005 * 109.46880 * 299.99170 * 24 23 22 46 46 H 1.08002 * 119.87888 * 180.02562 * 25 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4150 1.4500 -0.4546 5 6 3.5041 0.9545 -1.8750 6 1 2.6134 0.6239 -2.3886 7 6 4.7230 0.9223 -2.5187 8 7 4.8007 0.4904 -3.7584 9 14 6.2638 1.4934 -1.6303 10 1 6.8848 0.3426 -0.9268 11 1 7.2259 2.0491 -2.6155 12 1 5.9053 2.5426 -0.6424 13 6 1.8693 1.9965 1.3271 14 1 0.8973 1.7444 1.7512 15 6 2.0311 3.5285 1.2323 16 6 3.5364 3.7206 1.5138 17 6 3.9375 2.5278 2.3556 18 6 5.0562 2.3261 3.1477 19 6 5.2147 1.1385 3.8407 20 8 6.3118 0.9451 4.6207 21 6 7.2596 2.0128 4.6835 22 6 4.2500 0.1410 3.7327 23 8 4.4014 -1.0302 4.4069 24 6 3.3716 -2.0082 4.2479 25 6 3.1364 0.3449 2.9366 26 6 2.9795 1.5372 2.2483 27 1 -0.3634 0.4259 0.9352 28 1 -0.3633 0.5969 -0.8365 29 1 -0.3634 -1.0230 -0.0987 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.7649 2.4812 -0.4069 33 1 4.0359 0.8255 0.1877 34 1 5.6583 0.4673 -4.2111 35 1 1.4283 4.0294 1.9898 36 1 1.7745 3.8872 0.2356 37 1 3.7030 4.6459 2.0654 38 1 4.0990 3.7310 0.5803 39 1 5.8064 3.0990 3.2262 40 1 8.0834 1.7290 5.3384 41 1 7.6433 2.2172 3.6840 42 1 6.7747 2.9064 5.0764 43 1 3.2915 -2.2837 3.1964 44 1 3.6157 -2.8921 4.8372 45 1 2.4223 -1.5948 4.5885 46 1 2.3867 -0.4279 2.8520 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602438174.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:00 Heat of formation + Delta-G solvation = -54.077893 kcal Electronic energy + Delta-G solvation = -26813.035312 eV Core-core repulsion = 23281.996739 eV Total energy + Delta-G solvation = -3531.038573 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 2.37 seconds Orbital eigenvalues (eV) -42.08274 -40.29609 -39.44873 -37.30888 -34.96596 -34.59255 -31.80788 -31.59458 -30.33609 -29.16627 -28.13057 -27.60147 -26.67044 -23.96572 -23.16811 -22.77786 -21.95241 -20.74615 -19.14283 -18.88451 -17.95742 -17.81585 -17.14313 -16.83524 -16.49914 -16.20027 -15.98691 -15.66776 -15.52011 -15.28394 -14.97579 -14.67725 -14.36483 -14.06018 -13.90996 -13.47436 -13.28621 -13.09826 -12.94069 -12.82726 -12.69099 -12.59046 -12.36325 -12.26728 -12.21015 -12.12371 -11.91900 -11.83125 -11.77759 -11.49249 -11.36601 -11.05514 -10.74056 -9.69594 -9.06371 -8.67109 -8.30163 -6.29804 0.23466 0.35553 1.26477 1.28419 1.38509 2.28249 2.29687 2.31440 2.60398 3.03948 3.26395 3.40204 3.64397 3.92098 4.08924 4.10236 4.23942 4.26974 4.32536 4.34594 4.34827 4.37102 4.42808 4.50355 4.55544 4.65230 4.67284 4.70836 4.76799 4.84876 4.89954 4.94497 5.04671 5.05634 5.10627 5.12506 5.25363 5.34037 5.42687 5.47382 5.59886 5.62896 5.66619 6.03308 6.05251 6.42165 6.55631 6.69554 6.77391 7.32666 8.86359 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.010966 B = 0.006603 C = 0.005559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2552.770552 B = 4239.609264 C = 5036.075633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.176 3.824 5 C -0.510 4.510 6 H 0.042 0.958 7 C 0.014 3.986 8 N -0.946 5.946 9 Si 0.929 3.071 10 H -0.283 1.283 11 H -0.278 1.278 12 H -0.243 1.243 13 C 0.117 3.883 14 H 0.102 0.898 15 C -0.103 4.103 16 C -0.086 4.086 17 C -0.093 4.093 18 C -0.169 4.169 19 C 0.083 3.917 20 O -0.328 6.328 21 C 0.017 3.983 22 C 0.076 3.924 23 O -0.327 6.327 24 C 0.019 3.981 25 C -0.156 4.156 26 C -0.125 4.125 27 H 0.066 0.934 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.049 0.951 31 H 0.029 0.971 32 H 0.044 0.956 33 H -0.030 1.030 34 H 0.265 0.735 35 H 0.103 0.897 36 H 0.081 0.919 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.152 0.848 40 H 0.122 0.878 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.049 0.951 44 H 0.123 0.877 45 H 0.068 0.932 46 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.751 3.855 19.674 20.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.080 4.080 3 N -0.237 5.237 4 C 0.050 3.950 5 C -0.548 4.548 6 H 0.061 0.939 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.753 3.247 10 H -0.209 1.209 11 H -0.204 1.204 12 H -0.166 1.166 13 C 0.009 3.991 14 H 0.120 0.880 15 C -0.141 4.141 16 C -0.122 4.122 17 C -0.094 4.094 18 C -0.187 4.187 19 C 0.038 3.962 20 O -0.242 6.242 21 C -0.077 4.077 22 C 0.031 3.969 23 O -0.242 6.242 24 C -0.075 4.075 25 C -0.176 4.176 26 C -0.128 4.128 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.047 0.953 32 H 0.061 0.939 33 H -0.012 1.012 34 H 0.074 0.926 35 H 0.121 0.879 36 H 0.100 0.900 37 H 0.118 0.882 38 H 0.085 0.915 39 H 0.170 0.830 40 H 0.140 0.860 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.068 0.932 44 H 0.142 0.858 45 H 0.086 0.914 46 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -2.735 3.874 19.418 19.989 hybrid contribution 1.467 -0.655 -0.026 1.607 sum -1.268 3.219 19.393 19.699 Atomic orbital electron populations 1.21680 0.93289 1.01765 1.02127 1.22067 0.96829 0.89419 0.99714 1.62364 1.20988 1.18145 1.22240 1.19982 0.86039 0.96342 0.92687 1.21375 0.94099 1.41368 0.97963 0.93934 1.25662 1.01900 0.95402 0.95354 1.70029 1.26267 1.49387 1.13040 0.85982 0.79878 0.79677 0.79121 1.20912 1.20385 1.16626 1.21462 0.96002 0.95668 0.85991 0.88024 1.22315 0.94940 0.93427 1.03418 1.21270 0.97174 0.95794 0.97995 1.20592 0.94030 0.97788 0.97031 1.20690 1.00175 0.97118 1.00733 1.18240 0.88444 0.93381 0.96175 1.86115 1.30500 1.43745 1.63873 1.23349 0.91490 0.89885 1.02974 1.18270 0.94563 0.86844 0.97240 1.86101 1.48199 1.23700 1.66177 1.23310 0.90628 0.90969 1.02582 1.20683 0.98144 0.98998 0.99732 1.21244 0.99730 0.93900 0.97878 0.91531 0.93036 0.91531 0.93209 0.95306 0.93864 1.01213 0.92611 0.87880 0.90050 0.88213 0.91539 0.83011 0.85981 0.92741 0.91170 0.93184 0.85850 0.91358 0.83982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.82 9.95 71.98 0.72 -3.10 16 2 C 0.05 1.81 5.44 86.30 0.47 2.28 16 3 N -0.52 -20.58 4.37 -875.94 -3.83 -24.41 16 4 C 0.18 8.47 2.53 85.56 0.22 8.68 16 5 C -0.51 -29.63 8.76 25.60 0.22 -29.41 16 6 H 0.04 2.73 7.28 -2.91 -0.02 2.71 16 7 C 0.01 0.84 5.47 84.66 0.46 1.30 16 8 N -0.95 -59.92 13.96 21.45 0.30 -59.62 16 9 Si 0.93 45.73 27.47 68.60 1.88 47.62 16 10 H -0.28 -14.07 7.11 99.48 0.71 -13.37 16 11 H -0.28 -13.25 7.11 99.48 0.71 -12.55 16 12 H -0.24 -11.01 6.54 99.48 0.65 -10.36 16 13 C 0.12 3.71 2.92 44.85 0.13 3.85 16 14 H 0.10 2.78 6.65 -2.39 -0.02 2.76 16 15 C -0.10 -2.82 6.42 31.50 0.20 -2.62 16 16 C -0.09 -2.47 5.98 30.52 0.18 -2.29 16 17 C -0.09 -3.01 5.56 -19.57 -0.11 -3.12 16 18 C -0.17 -5.18 9.04 22.38 0.20 -4.98 16 19 C 0.08 2.76 6.70 22.54 0.15 2.91 16 20 O -0.33 -10.01 10.29 -79.69 -0.82 -10.83 16 21 C 0.02 0.34 9.81 113.37 1.11 1.46 16 22 C 0.08 2.57 6.70 22.54 0.15 2.72 16 23 O -0.33 -10.32 10.29 -79.69 -0.82 -11.14 16 24 C 0.02 0.42 9.81 113.37 1.11 1.54 16 25 C -0.16 -5.06 8.19 22.38 0.18 -4.88 16 26 C -0.13 -4.16 3.83 -19.57 -0.08 -4.24 16 27 H 0.07 1.62 6.92 -2.39 -0.02 1.60 16 28 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 29 H 0.07 1.69 8.14 -2.38 -0.02 1.67 16 30 H 0.05 2.29 6.28 -2.39 -0.01 2.28 16 31 H 0.03 1.03 5.86 -2.38 -0.01 1.02 16 32 H 0.04 2.05 3.79 -2.39 -0.01 2.05 16 33 H -0.03 -1.53 6.46 -2.39 -0.02 -1.54 16 34 H 0.26 15.74 8.31 -92.71 -0.77 14.97 16 35 H 0.10 2.12 8.14 -2.38 -0.02 2.10 16 36 H 0.08 2.39 8.09 -2.39 -0.02 2.38 16 37 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 38 H 0.07 2.27 6.05 -2.39 -0.01 2.26 16 39 H 0.15 3.77 6.29 -2.91 -0.02 3.75 16 40 H 0.12 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.08 7.65 -2.39 -0.02 1.06 16 42 H 0.07 1.15 7.67 -2.39 -0.02 1.13 16 43 H 0.05 1.14 7.66 -2.39 -0.02 1.12 16 44 H 0.12 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.07 1.26 7.66 -2.38 -0.02 1.24 16 46 H 0.14 4.04 5.33 -2.91 -0.02 4.03 16 Total: -1.00 -73.51 351.02 2.98 -70.53 By element: Atomic # 1 Polarization: 16.84 SS G_CDS: 0.93 Total: 17.77 kcal Atomic # 6 Polarization: -35.24 SS G_CDS: 5.33 Total: -29.91 kcal Atomic # 7 Polarization: -80.51 SS G_CDS: -3.53 Total: -84.04 kcal Atomic # 8 Polarization: -20.34 SS G_CDS: -1.64 Total: -21.98 kcal Atomic # 14 Polarization: 45.73 SS G_CDS: 1.88 Total: 47.62 kcal Total: -73.51 2.98 -70.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602438174.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.453 kcal (2) G-P(sol) polarization free energy of solvation -73.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.37 seconds