Wall clock time and date at job start Tue Mar 31 2020 10:44:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35902 * 116.99659 * 2 1 4 4 C 1.38776 * 120.02786 * 359.97438 * 3 2 1 5 5 C 1.38177 * 120.05287 * 180.30458 * 4 3 2 6 6 C 1.38174 * 120.10992 * 359.44190 * 5 4 3 7 7 C 1.38780 * 120.05511 * 0.55574 * 6 5 4 8 8 O 1.35890 * 120.02986 * 179.70360 * 7 6 5 9 9 C 1.42903 * 116.99940 * 0.02562 * 8 7 6 10 10 C 1.38631 * 119.94137 * 359.72546 * 7 6 5 11 11 C 1.50698 * 120.05343 * 180.02562 * 10 7 6 12 12 N 1.46900 * 109.47291 * 269.97542 * 11 10 7 13 13 C 1.46845 * 111.00322 * 294.21273 * 12 11 10 14 14 C 1.53034 * 109.52625 * 174.16030 * 13 12 11 15 15 C 1.53120 * 109.27994 * 59.17320 * 14 13 12 16 16 C 1.50693 * 109.57330 * 182.41032 * 15 14 13 17 17 H 1.08002 * 119.99998 * 119.71748 * 16 15 14 18 18 C 1.37875 * 120.00216 * 299.71729 * 16 15 14 19 19 N 1.31516 * 120.00159 * 359.97438 * 18 16 15 20 20 Si 1.86807 * 120.00255 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46874 * 59.99922 * 20 18 16 22 22 H 1.48498 * 109.47176 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46999 * 300.00348 * 20 18 16 24 24 C 1.53112 * 109.16175 * 302.34921 * 15 14 13 25 25 C 1.46852 * 111.00114 * 169.99639 * 12 11 10 26 26 H 1.08998 * 109.47423 * 60.00191 * 1 2 3 27 27 H 1.09003 * 109.46436 * 180.02562 * 1 2 3 28 28 H 1.09005 * 109.47023 * 299.99755 * 1 2 3 29 29 H 1.08002 * 119.96985 * 0.02562 * 4 3 2 30 30 H 1.08001 * 119.94317 * 179.70581 * 5 4 3 31 31 H 1.07998 * 119.97293 * 180.26030 * 6 5 4 32 32 H 1.09000 * 109.47362 * 180.02562 * 9 8 7 33 33 H 1.09004 * 109.47524 * 300.00251 * 9 8 7 34 34 H 1.09000 * 109.46730 * 60.00426 * 9 8 7 35 35 H 1.09001 * 109.47020 * 29.97442 * 11 10 7 36 36 H 1.09002 * 109.47437 * 149.97441 * 11 10 7 37 37 H 1.09000 * 109.45798 * 294.17463 * 13 12 11 38 38 H 1.09001 * 109.45952 * 54.13801 * 13 12 11 39 39 H 1.08999 * 109.50002 * 299.23444 * 14 13 12 40 40 H 1.08995 * 109.50536 * 179.11943 * 14 13 12 41 41 H 1.09001 * 109.52082 * 62.25191 * 15 14 13 42 42 H 0.97000 * 119.99980 * 180.02562 * 19 18 16 43 43 H 1.09002 * 109.50557 * 297.71090 * 24 15 14 44 44 H 1.08997 * 109.50323 * 177.59570 * 24 15 14 45 45 H 1.08997 * 109.46003 * 305.86176 * 25 12 11 46 46 H 1.08997 * 109.45833 * 65.83651 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2906 2.3751 -0.0005 5 6 1.9173 3.6066 -0.0069 6 6 3.2969 3.6823 -0.0011 7 6 4.0567 2.5210 -0.0005 8 8 5.4136 2.5960 -0.0009 9 6 5.9910 3.9032 -0.0013 10 6 3.4303 1.2843 0.0000 11 6 4.2529 0.0216 0.0012 12 7 4.5204 -0.3900 -1.3834 13 6 3.2793 -0.7759 -2.0668 14 6 3.5740 -1.0576 -3.5418 15 6 4.6069 -2.1832 -3.6451 16 6 4.9462 -2.4259 -5.0931 17 1 5.9622 -2.3023 -5.4378 18 6 3.9595 -2.8057 -5.9781 19 7 2.7223 -2.9567 -5.5584 20 14 4.3802 -3.1072 -7.7730 21 1 5.3867 -4.1948 -7.8695 22 1 3.1528 -3.5026 -8.5095 23 1 4.9357 -1.8646 -8.3667 24 6 5.8718 -1.7760 -2.8844 25 6 5.5106 -1.4735 -1.4284 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 0.2120 2.3185 -0.0005 30 1 1.3277 4.5115 -0.0121 31 1 3.7844 4.6460 -0.0018 32 1 7.0779 3.8203 -0.0020 33 1 5.6676 4.4431 -0.8913 34 1 5.6681 4.4433 0.8887 35 1 5.1969 0.2035 0.5150 36 1 3.7056 -0.7682 0.5157 37 1 2.8717 -1.6727 -1.6002 38 1 2.5549 0.0349 -1.9895 39 1 3.9688 -0.1572 -4.0124 40 1 2.6556 -1.3592 -4.0453 41 1 4.1973 -3.0945 -3.2092 42 1 2.0282 -3.2243 -6.1809 43 1 6.3028 -0.8868 -3.3447 44 1 6.5950 -2.5908 -2.9182 45 1 6.4066 -1.1694 -0.8874 46 1 5.0923 -2.3670 -0.9650 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602596716.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:44:11 Heat of formation + Delta-G solvation = -47.530218 kcal Electronic energy + Delta-G solvation = -26250.251071 eV Core-core repulsion = 22719.496426 eV Total energy + Delta-G solvation = -3530.754645 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.60237 -38.92762 -37.84191 -36.29785 -34.07437 -32.07855 -30.25937 -29.62094 -29.41830 -27.78896 -26.97989 -26.15073 -24.28644 -22.09419 -21.73811 -21.58227 -20.60089 -18.42785 -18.38033 -16.72140 -16.34696 -16.25033 -15.96642 -15.67897 -15.45199 -14.83843 -14.73843 -14.31771 -14.07114 -13.68463 -13.12819 -12.89743 -12.73799 -12.65089 -12.45675 -12.12779 -12.09357 -11.87618 -11.54337 -11.51204 -11.21276 -11.12403 -10.85533 -10.68673 -10.63959 -10.55299 -10.29589 -10.03132 -9.82003 -9.26769 -8.81837 -8.54806 -8.25024 -8.16439 -8.05950 -7.44276 -5.86780 -3.91640 1.40917 1.51110 2.99567 3.38894 3.42696 3.46066 3.73730 3.76159 4.53178 4.71486 4.84925 4.97999 4.99612 5.06069 5.10198 5.13771 5.20048 5.31978 5.41896 5.43215 5.47623 5.54285 5.73809 5.81782 5.97142 6.10515 6.19443 6.21666 6.30564 6.42462 6.46943 6.50949 6.56956 6.61048 6.81355 6.85277 7.04133 7.24538 7.35386 7.40500 7.49317 7.62563 7.79803 7.93326 8.01756 8.20590 8.31573 8.60913 9.11975 9.71756 11.19220 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015563 B = 0.004253 C = 0.003821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1798.712178 B = 6581.590446 C = 7325.595825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.304 6.304 3 C 0.172 3.828 4 C -0.247 4.247 5 C -0.046 4.046 6 C -0.249 4.249 7 C 0.182 3.818 8 O -0.301 6.301 9 C 0.029 3.971 10 C -0.135 4.135 11 C 0.111 3.889 12 N -0.526 5.526 13 C 0.065 3.935 14 C -0.103 4.103 15 C 0.048 3.952 16 C -0.508 4.508 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.888 3.112 21 H -0.278 1.278 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.105 4.105 25 C 0.062 3.938 26 H 0.057 0.943 27 H 0.100 0.900 28 H 0.052 0.948 29 H 0.127 0.873 30 H 0.123 0.877 31 H 0.126 0.874 32 H 0.098 0.902 33 H 0.055 0.945 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.038 0.962 37 H 0.021 0.979 38 H 0.055 0.945 39 H 0.039 0.961 40 H 0.089 0.911 41 H 0.019 0.981 42 H 0.258 0.742 43 H 0.055 0.945 44 H 0.047 0.953 45 H 0.056 0.944 46 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.194 13.122 14.963 20.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.217 6.217 3 C 0.126 3.874 4 C -0.266 4.266 5 C -0.065 4.065 6 C -0.268 4.268 7 C 0.135 3.865 8 O -0.213 6.213 9 C -0.066 4.066 10 C -0.137 4.137 11 C -0.017 4.017 12 N -0.251 5.251 13 C -0.062 4.062 14 C -0.141 4.141 15 C 0.030 3.970 16 C -0.546 4.546 17 H 0.071 0.929 18 C -0.140 4.140 19 N -0.532 5.532 20 Si 0.716 3.284 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.143 4.143 25 C -0.065 4.065 26 H 0.076 0.924 27 H 0.118 0.882 28 H 0.071 0.929 29 H 0.144 0.856 30 H 0.141 0.859 31 H 0.144 0.856 32 H 0.117 0.883 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.056 0.944 37 H 0.039 0.961 38 H 0.073 0.927 39 H 0.058 0.942 40 H 0.107 0.893 41 H 0.037 0.963 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.066 0.934 45 H 0.074 0.926 46 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -1.940 13.096 14.640 19.738 hybrid contribution -0.581 -0.308 -0.651 0.925 sum -2.521 12.788 13.989 19.120 Atomic orbital electron populations 1.23064 0.78425 1.04080 1.01110 1.86183 1.21225 1.26337 1.87920 1.18454 0.91027 0.84395 0.93551 1.21065 0.99903 0.92180 1.13487 1.20592 0.93682 0.96892 0.95324 1.21064 0.94826 0.97227 1.13683 1.18365 0.82463 0.92546 0.93133 1.86140 1.17116 1.30115 1.87916 1.23043 0.99162 0.83381 1.01051 1.18279 0.90295 0.94024 1.11086 1.20597 0.97682 0.92193 0.91224 1.62035 1.11866 1.38489 1.12754 1.22227 0.89609 0.97401 0.96948 1.21642 1.02769 0.98541 0.91160 1.18672 0.90340 0.93722 0.94282 1.21199 0.94484 1.45187 0.93775 0.92903 1.24959 0.95111 0.95545 0.98380 1.69885 1.00552 1.48106 1.34634 0.86725 0.77534 0.78582 0.85513 1.20421 1.21441 1.20378 1.21659 0.99986 0.99775 0.92844 1.22084 0.94225 0.91346 0.98889 0.92429 0.88155 0.92948 0.85555 0.85875 0.85611 0.88329 0.92623 0.93010 0.90543 0.94428 0.96057 0.92710 0.94247 0.89305 0.96251 0.93206 0.92611 0.93390 0.92572 0.96057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 9.81 101.05 0.99 1.30 16 2 O -0.30 -4.63 7.86 -19.43 -0.15 -4.78 16 3 C 0.17 2.63 5.40 -39.24 -0.21 2.42 16 4 C -0.25 -3.16 9.04 -39.40 -0.36 -3.52 16 5 C -0.05 -0.54 10.04 -39.63 -0.40 -0.94 16 6 C -0.25 -3.10 9.04 -39.40 -0.36 -3.46 16 7 C 0.18 2.71 6.66 -39.24 -0.26 2.45 16 8 O -0.30 -4.31 9.54 -19.40 -0.19 -4.49 16 9 C 0.03 0.27 9.81 101.05 0.99 1.26 16 10 C -0.14 -2.22 4.91 -104.33 -0.51 -2.73 16 11 C 0.11 1.93 4.73 -4.98 -0.02 1.91 16 12 N -0.53 -10.61 4.65 -236.11 -1.10 -11.71 16 13 C 0.07 1.43 4.40 -3.84 -0.02 1.42 16 14 C -0.10 -2.61 5.12 -26.65 -0.14 -2.75 16 15 C 0.05 1.27 2.16 -91.65 -0.20 1.07 16 16 C -0.51 -14.53 8.56 -34.44 -0.29 -14.82 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.73 5.31 -17.82 -0.09 1.63 16 19 N -0.89 -26.21 11.37 55.43 0.63 -25.58 16 20 Si 0.89 21.90 29.54 -169.99 -5.02 16.88 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.10 -2.36 5.32 -26.65 -0.14 -2.51 16 25 C 0.06 1.24 5.46 -3.83 -0.02 1.22 16 26 H 0.06 0.59 7.66 -51.93 -0.40 0.20 16 27 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 29 H 0.13 1.31 6.29 -52.49 -0.33 0.98 16 30 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 31 H 0.13 1.24 6.29 -52.49 -0.33 0.91 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.06 0.50 7.66 -51.93 -0.40 0.10 16 34 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 35 H 0.08 1.27 7.38 -51.93 -0.38 0.88 16 36 H 0.04 0.67 7.51 -51.93 -0.39 0.28 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.05 1.17 5.34 -51.93 -0.28 0.89 16 39 H 0.04 1.04 8.14 -51.93 -0.42 0.61 16 40 H 0.09 2.48 6.18 -51.93 -0.32 2.16 16 41 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.26 7.24 8.31 -40.82 -0.34 6.91 16 43 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 44 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 45 H 0.06 1.00 8.01 -51.93 -0.42 0.58 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 356.93 15.07 5.38 5.38 Total: -1.00 -32.08 356.93 -8.87 -40.95 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -7.39 Total: -0.61 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -1.04 Total: -16.04 kcal Atomic # 7 Polarization: -36.82 SS G_CDS: -0.47 Total: -37.28 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: -0.34 Total: -9.28 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.08 -8.87 -40.95 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602596716.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.580 kcal (2) G-P(sol) polarization free energy of solvation -32.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds