Wall clock time and date at job start Tue Mar 31 2020 10:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35900 * 117.00006 * 2 1 4 4 C 1.38776 * 120.02786 * 359.97438 * 3 2 1 5 5 C 1.38177 * 120.05287 * 180.23641 * 4 3 2 6 6 C 1.38173 * 120.10983 * 359.48504 * 5 4 3 7 7 C 1.38780 * 120.05554 * 0.51251 * 6 5 4 8 8 O 1.35890 * 120.02970 * 179.76619 * 7 6 5 9 9 C 1.42903 * 116.99955 * 359.97438 * 8 7 6 10 10 C 1.38631 * 119.94137 * 359.74473 * 7 6 5 11 11 C 1.50698 * 120.05347 * 180.02562 * 10 7 6 12 12 N 1.46899 * 109.47553 * 269.98306 * 11 10 7 13 13 C 1.46847 * 110.99574 * 294.20690 * 12 11 10 14 14 C 1.53040 * 109.51764 * 174.15972 * 13 12 11 15 15 C 1.53122 * 109.27881 * 59.18312 * 14 13 12 16 16 C 1.53117 * 109.15780 * 302.34050 * 15 14 13 17 17 H 1.08998 * 109.50646 * 297.71572 * 16 15 14 18 18 C 1.50703 * 109.50104 * 177.59426 * 16 15 14 19 19 H 1.08001 * 120.00112 * 240.19396 * 18 16 15 20 20 C 1.37876 * 119.99917 * 60.20265 * 18 16 15 21 21 N 1.31516 * 119.99908 * 359.97438 * 20 18 16 22 22 Si 1.86799 * 120.00258 * 179.97438 * 20 18 16 23 23 H 1.48505 * 109.47076 * 89.99605 * 22 20 18 24 24 H 1.48495 * 109.47188 * 209.99532 * 22 20 18 25 25 H 1.48502 * 109.46801 * 329.99878 * 22 20 18 26 26 C 1.46846 * 111.00108 * 169.99899 * 12 11 10 27 27 H 1.08996 * 109.47459 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47485 * 300.00438 * 1 2 3 29 29 H 1.09001 * 109.47229 * 59.99870 * 1 2 3 30 30 H 1.08002 * 119.96985 * 359.95200 * 4 3 2 31 31 H 1.08002 * 119.94343 * 179.74867 * 5 4 3 32 32 H 1.07998 * 119.97257 * 180.23568 * 6 5 4 33 33 H 1.09002 * 109.47492 * 300.00052 * 9 8 7 34 34 H 1.09006 * 109.47137 * 59.99993 * 9 8 7 35 35 H 1.09000 * 109.47387 * 179.97438 * 9 8 7 36 36 H 1.09005 * 109.46848 * 29.98093 * 11 10 7 37 37 H 1.08998 * 109.47407 * 149.97863 * 11 10 7 38 38 H 1.08992 * 109.46535 * 294.17220 * 13 12 11 39 39 H 1.09001 * 109.46268 * 54.14623 * 13 12 11 40 40 H 1.08996 * 109.50384 * 299.23624 * 14 13 12 41 41 H 1.09011 * 109.50156 * 179.11910 * 14 13 12 42 42 H 1.08999 * 109.52185 * 182.43725 * 15 14 13 43 43 H 1.09006 * 109.57521 * 62.27854 * 15 14 13 44 44 H 0.97001 * 119.99980 * 180.02562 * 21 20 18 45 45 H 1.09002 * 109.46604 * 305.85409 * 26 12 11 46 46 H 1.09009 * 109.46310 * 65.82292 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2907 2.3751 -0.0005 5 6 1.9175 3.6066 -0.0055 6 6 3.2971 3.6822 0.0009 7 6 4.0569 2.5208 0.0015 8 8 5.4137 2.5958 0.0029 9 6 5.9912 3.9029 0.0031 10 6 3.4304 1.2841 0.0010 11 6 4.2529 0.0214 0.0023 12 7 4.5215 -0.3895 -1.3823 13 6 3.2808 -0.7752 -2.0667 14 6 3.5766 -1.0562 -3.5417 15 6 4.6095 -2.1820 -3.6446 16 6 5.8739 -1.7750 -2.8829 17 1 6.3052 -0.8857 -3.3424 18 6 6.8737 -2.9017 -2.9292 19 1 7.2168 -3.3573 -2.0121 20 6 7.3505 -3.3508 -4.1425 21 7 6.9324 -2.7962 -5.2593 22 14 8.5903 -4.7468 -4.2000 23 1 7.8718 -6.0438 -4.2835 24 1 9.4617 -4.5861 -5.3916 25 1 9.4228 -4.7204 -2.9706 26 6 5.5115 -1.4731 -1.4270 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 0.2122 2.3186 -0.0017 31 1 1.3280 4.5115 -0.0100 32 1 3.7847 4.6458 0.0008 33 1 5.6690 4.4427 -0.8873 34 1 5.6671 4.4432 0.8927 35 1 7.0781 3.8200 0.0048 36 1 5.1965 0.2030 0.5169 37 1 3.7051 -0.7686 0.5160 38 1 2.8728 -1.6721 -1.6009 39 1 2.5564 0.0356 -1.9896 40 1 3.9718 -0.1556 -4.0116 41 1 2.6584 -1.3576 -4.0460 42 1 4.8554 -2.3560 -4.6921 43 1 4.2001 -3.0940 -3.2101 44 1 7.2675 -3.1124 -6.1129 45 1 6.4073 -1.1693 -0.8853 46 1 5.0929 -2.3669 -0.9641 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602705347.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:18 Heat of formation + Delta-G solvation = -67.466361 kcal Electronic energy + Delta-G solvation = -26195.048612 eV Core-core repulsion = 22663.429471 eV Total energy + Delta-G solvation = -3531.619141 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.64476 -39.92476 -39.54249 -37.27948 -35.76273 -33.94658 -32.01134 -31.46195 -30.41642 -28.62148 -27.80363 -26.88891 -26.83140 -23.85337 -23.30371 -22.61114 -21.96031 -20.33738 -19.38245 -18.40972 -17.74240 -17.23285 -17.19154 -16.85209 -16.44108 -16.37102 -15.99017 -15.66452 -15.56895 -15.04333 -14.89681 -14.43304 -14.19850 -14.03840 -13.80048 -13.47570 -13.31753 -13.18352 -13.01402 -12.83117 -12.64965 -12.52260 -12.40728 -12.29746 -12.19960 -11.81929 -11.74063 -11.60036 -11.52369 -11.35744 -10.85606 -10.66373 -10.36305 -9.36202 -9.02681 -8.99803 -8.06285 -6.20842 0.39870 0.51854 1.41851 1.42332 1.53252 2.09046 2.44057 2.72824 2.84518 3.20089 3.33383 3.78389 3.98246 4.10533 4.17038 4.22299 4.30174 4.31816 4.40975 4.44795 4.45578 4.48112 4.52743 4.58841 4.63318 4.66735 4.76955 4.77672 4.80389 4.92079 4.98124 5.01939 5.11677 5.19508 5.31424 5.37468 5.43012 5.51068 5.53327 5.63412 5.64297 5.98020 6.13962 6.22936 6.38581 6.46137 6.49422 6.56732 6.91039 7.46641 8.98683 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.017872 B = 0.004060 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.295688 B = 6894.049287 C = 7837.456894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.332 6.332 3 C 0.159 3.841 4 C -0.248 4.248 5 C -0.039 4.039 6 C -0.250 4.250 7 C 0.166 3.834 8 O -0.331 6.331 9 C 0.021 3.979 10 C -0.171 4.171 11 C 0.120 3.880 12 N -0.538 5.538 13 C 0.083 3.917 14 C -0.110 4.110 15 C -0.100 4.100 16 C 0.056 3.944 17 H -0.006 1.006 18 C -0.537 4.537 19 H 0.050 0.950 20 C 0.015 3.985 21 N -0.916 5.916 22 Si 0.957 3.043 23 H -0.275 1.275 24 H -0.282 1.282 25 H -0.269 1.269 26 C 0.084 3.916 27 H 0.110 0.890 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.154 0.846 31 H 0.161 0.839 32 H 0.151 0.849 33 H 0.063 0.937 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.069 0.931 37 H 0.032 0.968 38 H 0.020 0.980 39 H 0.074 0.926 40 H 0.045 0.955 41 H 0.068 0.932 42 H 0.059 0.941 43 H 0.022 0.978 44 H 0.260 0.740 45 H 0.052 0.948 46 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.727 14.605 12.266 23.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.245 6.245 3 C 0.113 3.887 4 C -0.266 4.266 5 C -0.057 4.057 6 C -0.269 4.269 7 C 0.119 3.881 8 O -0.244 6.244 9 C -0.073 4.073 10 C -0.173 4.173 11 C -0.007 4.007 12 N -0.262 5.262 13 C -0.045 4.045 14 C -0.148 4.148 15 C -0.138 4.138 16 C 0.038 3.962 17 H 0.012 0.988 18 C -0.575 4.575 19 H 0.069 0.931 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.782 3.218 23 H -0.200 1.200 24 H -0.207 1.207 25 H -0.193 1.193 26 C -0.044 4.044 27 H 0.128 0.872 28 H 0.090 0.910 29 H 0.085 0.915 30 H 0.172 0.828 31 H 0.179 0.821 32 H 0.169 0.831 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.126 0.874 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.038 0.962 39 H 0.092 0.908 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.078 0.922 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.071 0.929 46 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -13.269 14.639 11.839 23.033 hybrid contribution 0.415 -1.274 0.053 1.341 sum -12.854 13.366 11.893 22.029 Atomic orbital electron populations 1.23336 0.76359 1.05244 1.02544 1.86130 1.23479 1.26785 1.88117 1.18596 0.90592 0.85354 0.94143 1.21387 1.01123 0.91507 1.12610 1.21083 0.93491 0.98037 0.93100 1.21405 0.95432 0.97322 1.12694 1.18662 0.82882 0.93144 0.93369 1.86127 1.17479 1.32914 1.87915 1.23317 0.99782 0.81866 1.02354 1.18360 0.91211 0.93610 1.14136 1.20464 0.97883 0.93137 0.89223 1.61986 1.10838 1.38450 1.14932 1.21867 0.90811 0.98143 0.93643 1.21608 0.98662 0.98590 0.95927 1.21434 0.95177 0.95261 1.01953 1.18550 0.93004 0.94291 0.90403 0.98778 1.21508 1.25018 1.18431 0.92567 0.93134 1.25733 0.98273 0.99126 0.95280 1.70049 1.44739 1.42953 0.97797 0.85582 0.79041 0.79499 0.77673 1.20049 1.20709 1.19334 1.21969 0.93607 0.90195 0.98623 0.87156 0.90982 0.91543 0.82838 0.82150 0.83124 0.91886 0.90785 0.87361 0.91231 0.94979 0.96180 0.90755 0.93639 0.91379 0.92206 0.95914 0.93039 0.92931 0.97017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 9.81 113.37 1.11 1.42 16 2 O -0.33 -8.80 7.86 -92.43 -0.73 -9.53 16 3 C 0.16 4.37 5.40 22.49 0.12 4.49 16 4 C -0.25 -5.09 9.04 22.38 0.20 -4.89 16 5 C -0.04 -0.72 10.04 22.24 0.22 -0.50 16 6 C -0.25 -5.46 9.04 22.38 0.20 -5.26 16 7 C 0.17 4.88 6.66 22.49 0.15 5.03 16 8 O -0.33 -10.05 9.54 -92.32 -0.88 -10.93 16 9 C 0.02 0.40 9.81 113.37 1.11 1.52 16 10 C -0.17 -5.53 4.91 -19.68 -0.10 -5.63 16 11 C 0.12 4.46 4.73 85.56 0.40 4.87 16 12 N -0.54 -22.92 4.65 -900.93 -4.19 -27.10 16 13 C 0.08 3.32 4.40 86.33 0.38 3.70 16 14 C -0.11 -4.76 6.09 30.65 0.19 -4.58 16 15 C -0.10 -5.19 5.03 30.67 0.15 -5.04 16 16 C 0.06 3.11 2.26 -11.49 -0.03 3.09 16 17 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 18 C -0.54 -31.50 8.56 25.60 0.22 -31.28 16 19 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 20 C 0.01 0.84 5.30 84.65 0.45 1.29 16 21 N -0.92 -55.20 11.36 21.45 0.24 -54.95 16 22 Si 0.96 45.26 29.54 68.60 2.03 47.29 16 23 H -0.27 -12.62 7.11 99.48 0.71 -11.91 16 24 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 25 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 26 C 0.08 4.02 4.68 86.33 0.40 4.42 16 27 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.07 0.87 7.66 -2.39 -0.02 0.85 16 29 H 0.07 0.91 7.66 -2.39 -0.02 0.89 16 30 H 0.15 2.20 6.29 -2.91 -0.02 2.18 16 31 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 32 H 0.15 2.43 6.29 -2.91 -0.02 2.41 16 33 H 0.06 1.09 7.66 -2.39 -0.02 1.07 16 34 H 0.07 1.06 7.66 -2.38 -0.02 1.04 16 35 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.64 7.38 -2.38 -0.02 2.62 16 37 H 0.03 1.20 7.51 -2.39 -0.02 1.18 16 38 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.07 2.74 5.34 -2.39 -0.01 2.73 16 40 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 41 H 0.07 2.57 8.14 -2.38 -0.02 2.55 16 42 H 0.06 3.44 6.16 -2.39 -0.01 3.42 16 43 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 44 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 45 H 0.05 2.52 8.02 -2.39 -0.02 2.50 16 46 H 0.01 0.56 8.14 -2.38 -0.02 0.54 16 Total: -1.00 -71.55 356.90 2.63 -68.92 By element: Atomic # 1 Polarization: 12.70 SS G_CDS: 0.96 Total: 13.66 kcal Atomic # 6 Polarization: -32.56 SS G_CDS: 5.20 Total: -27.36 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -3.94 Total: -82.06 kcal Atomic # 8 Polarization: -18.85 SS G_CDS: -1.61 Total: -20.45 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -71.55 2.63 -68.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602705347.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.455 kcal (2) G-P(sol) polarization free energy of solvation -71.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.466 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds