Wall clock time and date at job start Tue Mar 31 2020 10:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00351 * 2 1 4 4 C 1.38698 * 120.00003 * 179.97438 * 3 2 1 5 5 C 1.38132 * 119.99715 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00044 * 0.02562 * 5 4 3 7 7 O 1.35991 * 120.00134 * 179.97438 * 6 5 4 8 8 C 1.42897 * 117.00035 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47003 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46730 * 65.45591 * 9 8 7 11 11 C 1.46900 * 110.99961 * 286.87491 * 10 9 8 12 12 C 1.46898 * 111.00153 * 162.91863 * 10 9 8 13 13 C 1.53005 * 109.47229 * 200.52884 * 12 10 9 14 14 C 1.50704 * 115.54818 * 54.79999 * 13 12 10 15 15 H 1.07996 * 119.99670 * 215.56513 * 14 13 12 16 16 C 1.37880 * 119.99835 * 35.28787 * 14 13 12 17 17 N 1.31513 * 120.00480 * 1.36248 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 181.36229 * 16 14 13 19 19 H 1.48496 * 109.46951 * 89.99992 * 18 16 14 20 20 H 1.48497 * 109.47351 * 210.00095 * 18 16 14 21 21 H 1.48503 * 109.46907 * 330.00056 * 18 16 14 22 22 C 1.53001 * 117.49957 * 200.46788 * 13 12 10 23 23 C 1.52990 * 117.49940 * 269.13056 * 13 12 10 24 24 C 1.38699 * 120.00465 * 0.24791 * 6 5 4 25 25 C 1.38139 * 119.99226 * 359.49432 * 24 6 5 26 26 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46806 * 299.99777 * 1 2 3 28 28 H 1.09004 * 109.46488 * 59.99511 * 1 2 3 29 29 H 1.07996 * 120.00499 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.00209 * 179.97438 * 5 4 3 31 31 H 1.09006 * 109.46788 * 60.00092 * 8 7 6 32 32 H 1.08992 * 109.47236 * 300.00217 * 8 7 6 33 33 H 1.08990 * 109.47202 * 305.45834 * 9 8 7 34 34 H 1.08997 * 109.47231 * 185.44712 * 9 8 7 35 35 H 1.09000 * 109.47220 * 308.99925 * 11 10 9 36 36 H 1.09000 * 109.47304 * 69.00024 * 11 10 9 37 37 H 1.09006 * 109.47512 * 189.00326 * 11 10 9 38 38 H 1.09003 * 109.46868 * 80.52772 * 12 10 9 39 39 H 1.08996 * 109.46905 * 320.52922 * 12 10 9 40 40 H 0.96996 * 120.00551 * 184.98654 * 17 16 14 41 41 H 1.08999 * 117.49659 * 215.00527 * 22 13 12 42 42 H 1.08998 * 117.49535 * 0.02573 * 22 13 12 43 43 H 1.08999 * 117.50307 * 359.97438 * 23 13 12 44 44 H 1.09001 * 117.50101 * 144.97455 * 23 13 12 45 45 H 1.07993 * 120.00326 * 179.72907 * 24 6 5 46 46 H 1.08000 * 119.99475 * 180.23299 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0587 2.5148 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9207 4.8897 0.0027 8 6 3.0808 6.0458 0.0026 9 6 3.9480 7.3063 0.0045 10 7 4.7009 7.3845 -1.2545 11 6 5.7864 6.3950 -1.2810 12 6 5.2197 8.7411 -1.4743 13 6 5.5338 8.9326 -2.9595 14 6 4.3961 8.6487 -3.9063 15 1 4.5938 8.2015 -4.8692 16 6 3.1023 8.9546 -3.5407 17 7 2.8637 9.5188 -2.3769 18 14 1.6884 8.5678 -4.6985 19 1 1.1802 7.2007 -4.4196 20 1 0.5966 9.5532 -4.4932 21 1 2.1644 8.6420 -6.1032 22 6 6.5045 10.0531 -3.3376 23 6 6.9482 8.5911 -3.4322 24 6 1.9182 3.6056 0.0068 25 6 1.2911 2.3748 0.0009 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 4.0198 0.3784 0.0005 30 1 5.1372 2.5714 0.0019 31 1 2.4508 6.0373 0.8922 32 1 2.4522 6.0382 -0.8878 33 1 4.6441 7.2671 0.8422 34 1 3.3111 8.1854 0.1020 35 1 6.3779 6.4800 -0.3695 36 1 5.3629 5.3928 -1.3472 37 1 6.4239 6.5780 -2.1461 38 1 6.1288 8.8816 -0.8896 39 1 4.4718 9.4707 -1.1641 40 1 1.9497 9.6680 -2.0886 41 1 6.3204 10.5849 -4.2710 42 1 6.9198 10.6535 -2.5282 43 1 7.6552 8.2304 -2.6852 44 1 7.0559 8.1608 -4.4279 45 1 1.3301 4.5113 0.0116 46 1 0.2126 2.3183 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602767963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:23:00 Heat of formation + Delta-G solvation = -5.554657 kcal Electronic energy + Delta-G solvation = -25414.911081 eV Core-core repulsion = 21885.976634 eV Total energy + Delta-G solvation = -3528.934448 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.32362 -38.96191 -37.44373 -36.28954 -34.66765 -31.98691 -31.19725 -30.00784 -28.63610 -27.13225 -26.45413 -25.33449 -23.98963 -22.39710 -21.76203 -21.10050 -20.30351 -18.81945 -18.41356 -17.55460 -16.41828 -16.06450 -15.92663 -15.69232 -14.82259 -14.63737 -14.42961 -14.05571 -13.85504 -13.74362 -13.53493 -13.12729 -13.04088 -12.62301 -12.52954 -12.29321 -11.85604 -11.78560 -11.43547 -11.18391 -11.06269 -10.90225 -10.87599 -10.81841 -10.46180 -10.42321 -10.27968 -10.08205 -9.85619 -9.23983 -9.05442 -8.84875 -8.57422 -8.00034 -7.62343 -7.05863 -5.83418 -3.89360 1.27882 1.54413 3.21047 3.35259 3.40814 3.45415 3.57481 3.78970 4.49505 4.72009 4.79696 4.81676 4.96359 4.98013 5.19524 5.22793 5.28268 5.40863 5.45287 5.57491 5.67829 5.70050 5.76645 5.88599 6.03581 6.18518 6.20997 6.27829 6.30244 6.37215 6.40786 6.49420 6.51020 6.63046 6.68177 6.74348 6.82315 6.99741 7.00682 7.27087 7.29972 7.39096 7.65410 7.71258 8.06772 8.27952 8.34595 8.63024 9.05457 9.70730 11.15019 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003708 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.681947 B = 7549.243752 C = 8450.647180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.077 3.923 4 C -0.111 4.111 5 C -0.119 4.119 6 C 0.109 3.891 7 O -0.304 6.304 8 C 0.067 3.933 9 C 0.067 3.933 10 N -0.497 5.497 11 C 0.028 3.972 12 C 0.102 3.898 13 C 0.068 3.932 14 C -0.463 4.463 15 H 0.052 0.948 16 C 0.086 3.914 17 N -0.881 5.881 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.289 1.289 21 H -0.277 1.277 22 C -0.210 4.210 23 C -0.217 4.217 24 C -0.171 4.171 25 C -0.166 4.166 26 H 0.096 0.904 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.134 0.866 30 H 0.136 0.864 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.023 0.977 34 H 0.098 0.902 35 H 0.001 0.999 36 H 0.068 0.932 37 H 0.064 0.936 38 H -0.017 1.017 39 H 0.119 0.881 40 H 0.254 0.746 41 H 0.076 0.924 42 H 0.061 0.939 43 H 0.063 0.937 44 H 0.072 0.928 45 H 0.131 0.869 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.354 -13.129 8.365 15.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.032 3.968 4 C -0.130 4.130 5 C -0.137 4.137 6 C 0.063 3.937 7 O -0.217 6.217 8 C -0.008 4.008 9 C -0.062 4.062 10 N -0.219 5.219 11 C -0.120 4.120 12 C -0.025 4.025 13 C 0.067 3.933 14 C -0.500 4.500 15 H 0.071 0.929 16 C -0.116 4.116 17 N -0.520 5.520 18 Si 0.715 3.285 19 H -0.208 1.208 20 H -0.216 1.216 21 H -0.202 1.202 22 C -0.248 4.248 23 C -0.254 4.254 24 C -0.190 4.190 25 C -0.185 4.185 26 H 0.115 0.885 27 H 0.071 0.929 28 H 0.072 0.928 29 H 0.151 0.849 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.041 0.959 34 H 0.116 0.884 35 H 0.020 0.980 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.001 0.999 39 H 0.136 0.864 40 H 0.065 0.935 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.081 0.919 44 H 0.090 0.910 45 H 0.149 0.851 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.559 -13.233 8.061 15.898 hybrid contribution -0.683 0.152 -0.023 0.700 sum -4.242 -13.081 8.038 15.929 Atomic orbital electron populations 1.22989 0.78884 1.03546 1.01217 1.86042 1.20937 1.26951 1.89663 1.18847 0.92302 0.84031 1.01600 1.20173 0.91226 0.97763 1.03843 1.20253 1.00223 0.89106 1.04133 1.19033 0.90902 0.86492 0.97282 1.86243 1.35833 1.11773 1.87872 1.23037 0.93709 0.83347 1.00706 1.22097 0.97182 0.95246 0.91646 1.61573 1.24351 1.05708 1.30267 1.22553 0.93578 0.97123 0.98792 1.21843 0.96209 0.89848 0.94576 1.18966 0.86816 0.94420 0.93091 1.20333 0.90191 1.39120 1.00372 0.92941 1.24702 0.98087 0.93819 0.94953 1.69760 1.19092 1.43146 1.19970 0.86689 0.82370 0.77907 0.81496 1.20813 1.21556 1.20224 1.22985 1.09588 0.90795 1.01478 1.22923 1.02631 0.99076 1.00819 1.21126 0.93760 0.98360 1.05785 1.21002 0.99768 0.91793 1.05937 0.88543 0.92924 0.92817 0.84861 0.84576 0.92944 0.90928 0.95882 0.88366 0.98042 0.91334 0.91717 0.99857 0.86384 0.93538 0.90559 0.92020 0.91857 0.90963 0.85094 0.85581 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.81 101.05 0.99 1.22 16 2 O -0.32 -3.81 10.50 -19.68 -0.21 -4.02 16 3 C 0.08 0.99 6.69 -39.24 -0.26 0.73 16 4 C -0.11 -1.41 9.98 -39.45 -0.39 -1.80 16 5 C -0.12 -1.61 9.98 -39.45 -0.39 -2.00 16 6 C 0.11 1.66 6.69 -39.24 -0.26 1.40 16 7 O -0.30 -5.08 7.23 -19.71 -0.14 -5.22 16 8 C 0.07 1.11 5.05 37.16 0.19 1.30 16 9 C 0.07 1.24 5.54 -3.82 -0.02 1.21 16 10 N -0.50 -10.66 4.21 -242.92 -1.02 -11.69 16 11 C 0.03 0.55 8.85 60.06 0.53 1.09 16 12 C 0.10 2.36 3.97 -3.82 -0.02 2.35 16 13 C 0.07 1.66 1.79 -155.66 -0.28 1.39 16 14 C -0.46 -12.48 8.76 -34.44 -0.30 -12.78 16 15 H 0.05 1.45 7.81 -52.49 -0.41 1.04 16 16 C 0.09 2.26 5.29 -17.82 -0.09 2.17 16 17 N -0.88 -22.95 10.38 55.43 0.58 -22.37 16 18 Si 0.89 20.99 29.54 -169.99 -5.02 15.97 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C -0.21 -4.79 9.96 -26.69 -0.27 -5.05 16 23 C -0.22 -4.80 8.49 -26.70 -0.23 -5.03 16 24 C -0.17 -2.41 9.03 -39.45 -0.36 -2.77 16 25 C -0.17 -2.11 9.03 -39.45 -0.36 -2.46 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.05 0.37 7.66 -51.93 -0.40 -0.03 16 28 H 0.05 0.40 7.66 -51.93 -0.40 0.01 16 29 H 0.13 1.40 8.06 -52.49 -0.42 0.98 16 30 H 0.14 1.65 8.06 -52.49 -0.42 1.23 16 31 H 0.05 0.73 7.65 -51.93 -0.40 0.33 16 32 H 0.07 1.32 7.67 -51.93 -0.40 0.92 16 33 H 0.02 0.41 7.88 -51.93 -0.41 0.00 16 34 H 0.10 1.86 7.65 -51.93 -0.40 1.46 16 35 H 0.00 0.02 7.91 -51.93 -0.41 -0.39 16 36 H 0.07 1.33 5.88 -51.93 -0.31 1.03 16 37 H 0.06 1.34 5.71 -51.93 -0.30 1.04 16 38 H -0.02 -0.37 7.94 -51.93 -0.41 -0.78 16 39 H 0.12 2.94 5.35 -51.93 -0.28 2.66 16 40 H 0.25 6.39 8.32 -40.82 -0.34 6.05 16 41 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 43 H 0.06 1.31 7.70 -51.93 -0.40 0.91 16 44 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 45 H 0.13 1.73 6.29 -52.49 -0.33 1.40 16 46 H 0.13 1.30 6.29 -52.49 -0.33 0.97 16 LS Contribution 366.14 15.07 5.52 5.52 Total: -1.00 -28.38 366.14 -9.06 -37.44 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -7.24 Total: 3.42 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: -1.52 Total: -19.05 kcal Atomic # 7 Polarization: -33.61 SS G_CDS: -0.45 Total: -34.06 kcal Atomic # 8 Polarization: -8.89 SS G_CDS: -0.35 Total: -9.24 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -28.38 -9.06 -37.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602767963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.890 kcal (2) G-P(sol) polarization free energy of solvation -28.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds