Wall clock time and date at job start Tue Mar 31 2020 10:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35982 * 117.00351 * 2 1 4 4 C 1.38698 * 120.00003 * 179.97438 * 3 2 1 5 5 C 1.38132 * 119.99715 * 180.02562 * 4 3 2 6 6 C 1.38696 * 120.00044 * 0.02562 * 5 4 3 7 7 O 1.35991 * 120.00134 * 179.97438 * 6 5 4 8 8 C 1.42897 * 117.00035 * 179.97438 * 7 6 5 9 9 C 1.53005 * 109.47003 * 179.97438 * 8 7 6 10 10 N 1.46901 * 109.46730 * 65.45591 * 9 8 7 11 11 C 1.46900 * 110.99961 * 286.87491 * 10 9 8 12 12 C 1.46898 * 111.00153 * 162.91863 * 10 9 8 13 13 C 1.53005 * 109.47229 * 200.52884 * 12 10 9 14 14 C 1.50704 * 115.54818 * 54.79999 * 13 12 10 15 15 H 1.07996 * 119.99670 * 215.56513 * 14 13 12 16 16 C 1.37880 * 119.99835 * 35.28787 * 14 13 12 17 17 N 1.31513 * 120.00480 * 1.36248 * 16 14 13 18 18 Si 1.86801 * 119.99850 * 181.36229 * 16 14 13 19 19 H 1.48496 * 109.46951 * 89.99992 * 18 16 14 20 20 H 1.48497 * 109.47351 * 210.00095 * 18 16 14 21 21 H 1.48503 * 109.46907 * 330.00056 * 18 16 14 22 22 C 1.53001 * 117.49957 * 200.46788 * 13 12 10 23 23 C 1.52990 * 117.49940 * 269.13056 * 13 12 10 24 24 C 1.38699 * 120.00465 * 0.24791 * 6 5 4 25 25 C 1.38139 * 119.99226 * 359.49432 * 24 6 5 26 26 H 1.08995 * 109.46856 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46806 * 299.99777 * 1 2 3 28 28 H 1.09004 * 109.46488 * 59.99511 * 1 2 3 29 29 H 1.07996 * 120.00499 * 0.02562 * 4 3 2 30 30 H 1.07999 * 120.00209 * 179.97438 * 5 4 3 31 31 H 1.09006 * 109.46788 * 60.00092 * 8 7 6 32 32 H 1.08992 * 109.47236 * 300.00217 * 8 7 6 33 33 H 1.08990 * 109.47202 * 305.45834 * 9 8 7 34 34 H 1.08997 * 109.47231 * 185.44712 * 9 8 7 35 35 H 1.09000 * 109.47220 * 308.99925 * 11 10 9 36 36 H 1.09000 * 109.47304 * 69.00024 * 11 10 9 37 37 H 1.09006 * 109.47512 * 189.00326 * 11 10 9 38 38 H 1.09003 * 109.46868 * 80.52772 * 12 10 9 39 39 H 1.08996 * 109.46905 * 320.52922 * 12 10 9 40 40 H 0.96996 * 120.00551 * 184.98654 * 17 16 14 41 41 H 1.08999 * 117.49659 * 215.00527 * 22 13 12 42 42 H 1.08998 * 117.49535 * 0.02573 * 22 13 12 43 43 H 1.08999 * 117.50307 * 359.97438 * 23 13 12 44 44 H 1.09001 * 117.50101 * 144.97455 * 23 13 12 45 45 H 1.07993 * 120.00326 * 179.72907 * 24 6 5 46 46 H 1.08000 * 119.99475 * 180.23299 * 25 24 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2116 0.0000 4 6 3.4315 1.2841 0.0005 5 6 4.0587 2.5148 0.0011 6 6 3.3033 3.6781 0.0016 7 8 3.9207 4.8897 0.0027 8 6 3.0808 6.0458 0.0026 9 6 3.9480 7.3063 0.0045 10 7 4.7009 7.3845 -1.2545 11 6 5.7864 6.3950 -1.2810 12 6 5.2197 8.7411 -1.4743 13 6 5.5338 8.9326 -2.9595 14 6 4.3961 8.6487 -3.9063 15 1 4.5938 8.2015 -4.8692 16 6 3.1023 8.9546 -3.5407 17 7 2.8637 9.5188 -2.3769 18 14 1.6884 8.5678 -4.6985 19 1 1.1802 7.2007 -4.4196 20 1 0.5966 9.5532 -4.4932 21 1 2.1644 8.6420 -6.1032 22 6 6.5045 10.0531 -3.3376 23 6 6.9482 8.5911 -3.4322 24 6 1.9182 3.6056 0.0068 25 6 1.2911 2.3748 0.0009 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3632 0.5139 -0.8900 29 1 4.0198 0.3784 0.0005 30 1 5.1372 2.5714 0.0019 31 1 2.4508 6.0373 0.8922 32 1 2.4522 6.0382 -0.8878 33 1 4.6441 7.2671 0.8422 34 1 3.3111 8.1854 0.1020 35 1 6.3779 6.4800 -0.3695 36 1 5.3629 5.3928 -1.3472 37 1 6.4239 6.5780 -2.1461 38 1 6.1288 8.8816 -0.8896 39 1 4.4718 9.4707 -1.1641 40 1 1.9497 9.6680 -2.0886 41 1 6.3204 10.5849 -4.2710 42 1 6.9198 10.6535 -2.5282 43 1 7.6552 8.2304 -2.6852 44 1 7.0559 8.1608 -4.4279 45 1 1.3301 4.5113 0.0116 46 1 0.2126 2.3183 0.0011 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602767963.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:22:59 Heat of formation + Delta-G solvation = -20.274630 kcal Electronic energy + Delta-G solvation = -25415.549387 eV Core-core repulsion = 21885.976634 eV Total energy + Delta-G solvation = -3529.572754 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.34236 -40.05769 -39.08771 -37.45886 -36.23035 -33.98777 -32.20743 -31.24477 -29.74555 -28.21481 -27.87850 -27.29396 -25.38783 -23.57996 -22.91475 -22.80568 -21.73802 -20.71005 -19.42191 -18.59314 -18.02368 -17.39500 -17.18734 -16.60741 -16.54397 -15.91058 -15.72507 -15.62377 -15.28746 -15.13410 -14.79842 -14.53553 -14.29247 -13.96338 -13.63696 -13.47179 -13.29852 -13.10628 -12.85085 -12.81306 -12.72411 -12.46186 -12.29475 -12.26659 -12.14979 -12.02455 -11.74716 -11.58521 -11.29898 -11.02372 -10.79739 -10.41891 -10.05502 -9.91547 -8.71376 -8.64071 -7.81959 -5.94135 0.27789 0.50457 1.45286 1.48051 1.54599 2.31895 2.47947 2.53591 2.76597 3.11182 3.42527 3.77531 3.80158 3.85928 4.13885 4.20098 4.28263 4.34037 4.38271 4.40288 4.43081 4.49968 4.53775 4.58645 4.70457 4.73263 4.75924 4.85582 4.86285 4.92586 4.97278 4.99314 5.05318 5.12285 5.19573 5.30603 5.32675 5.44391 5.47757 5.58692 5.63470 5.71886 6.12304 6.37665 6.50198 6.57975 6.66957 6.78039 7.05023 7.66618 9.13537 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.016326 B = 0.003708 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.681947 B = 7549.243752 C = 8450.647180 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.333 6.333 3 C 0.074 3.926 4 C -0.116 4.116 5 C -0.122 4.122 6 C 0.081 3.919 7 O -0.317 6.317 8 C 0.077 3.923 9 C 0.070 3.930 10 N -0.516 5.516 11 C 0.038 3.962 12 C 0.114 3.886 13 C 0.041 3.959 14 C -0.487 4.487 15 H 0.034 0.966 16 C 0.056 3.944 17 N -0.886 5.886 18 Si 0.933 3.067 19 H -0.283 1.283 20 H -0.284 1.284 21 H -0.282 1.282 22 C -0.208 4.208 23 C -0.199 4.199 24 C -0.180 4.180 25 C -0.169 4.169 26 H 0.120 0.880 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.153 0.847 30 H 0.146 0.854 31 H 0.079 0.921 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.089 0.911 35 H 0.012 0.988 36 H 0.070 0.930 37 H 0.053 0.947 38 H -0.012 1.012 39 H 0.098 0.902 40 H 0.256 0.744 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.069 0.931 45 H 0.134 0.866 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.938 -14.462 9.081 17.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.248 6.248 3 C 0.029 3.971 4 C -0.134 4.134 5 C -0.141 4.141 6 C 0.036 3.964 7 O -0.231 6.231 8 C 0.002 3.998 9 C -0.059 4.059 10 N -0.239 5.239 11 C -0.111 4.111 12 C -0.013 4.013 13 C 0.040 3.960 14 C -0.524 4.524 15 H 0.052 0.948 16 C -0.145 4.145 17 N -0.524 5.524 18 Si 0.761 3.239 19 H -0.210 1.210 20 H -0.209 1.209 21 H -0.207 1.207 22 C -0.247 4.247 23 C -0.237 4.237 24 C -0.199 4.199 25 C -0.188 4.188 26 H 0.138 0.862 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.171 0.829 30 H 0.164 0.836 31 H 0.097 0.903 32 H 0.069 0.931 33 H 0.052 0.948 34 H 0.107 0.893 35 H 0.031 0.969 36 H 0.089 0.911 37 H 0.071 0.929 38 H 0.006 0.994 39 H 0.116 0.884 40 H 0.066 0.934 41 H 0.087 0.913 42 H 0.094 0.906 43 H 0.099 0.901 44 H 0.087 0.913 45 H 0.152 0.848 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.149 -14.574 8.783 17.514 hybrid contribution -0.547 0.467 -0.243 0.759 sum -4.696 -14.106 8.540 17.146 Atomic orbital electron populations 1.23297 0.76882 1.05463 1.01919 1.86036 1.23046 1.26330 1.89389 1.19046 0.92658 0.84602 1.00755 1.20438 0.91629 0.98116 1.03227 1.20443 1.00817 0.89008 1.03821 1.19287 0.91694 0.86223 0.99206 1.86173 1.36176 1.12234 1.88532 1.22830 0.93144 0.82885 1.00931 1.22073 0.97093 0.95980 0.90738 1.61523 1.25027 1.05106 1.32240 1.22440 0.93144 0.96759 0.98722 1.21583 0.95702 0.90401 0.93643 1.19079 0.87216 0.96088 0.93613 1.20449 0.91674 1.39987 1.00334 0.94805 1.25148 0.99411 0.93840 0.96069 1.69854 1.19415 1.42843 1.20320 0.85968 0.80430 0.77596 0.79874 1.20963 1.20927 1.20697 1.22985 1.08980 0.91154 1.01561 1.22878 1.01404 0.98412 1.00970 1.21260 0.93506 0.99173 1.05967 1.21241 1.01008 0.91202 1.05336 0.86175 0.91891 0.92375 0.82929 0.83631 0.90292 0.93073 0.94802 0.89292 0.96943 0.91140 0.92857 0.99369 0.88387 0.93396 0.91283 0.90568 0.90127 0.91259 0.84780 0.83382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.36 16 2 O -0.33 -7.18 10.50 -93.35 -0.98 -8.16 16 3 C 0.07 1.79 6.69 22.49 0.15 1.94 16 4 C -0.12 -2.74 9.98 22.35 0.22 -2.52 16 5 C -0.12 -3.20 9.98 22.35 0.22 -2.98 16 6 C 0.08 2.41 6.69 22.49 0.15 2.57 16 7 O -0.32 -10.41 7.23 -93.45 -0.68 -11.09 16 8 C 0.08 2.52 5.05 71.98 0.36 2.88 16 9 C 0.07 2.53 5.54 86.30 0.48 3.01 16 10 N -0.52 -22.04 4.21 -922.45 -3.89 -25.93 16 11 C 0.04 1.46 8.85 127.69 1.13 2.59 16 12 C 0.11 5.25 3.97 86.31 0.34 5.59 16 13 C 0.04 2.00 1.79 -52.93 -0.09 1.90 16 14 C -0.49 -26.53 8.76 25.60 0.22 -26.30 16 15 H 0.03 1.91 7.81 -2.91 -0.02 1.89 16 16 C 0.06 2.97 5.29 84.66 0.45 3.42 16 17 N -0.89 -46.22 10.38 21.45 0.22 -46.00 16 18 Si 0.93 43.18 29.54 68.60 2.03 45.20 16 19 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 20 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 22 C -0.21 -9.37 9.96 30.62 0.30 -9.07 16 23 C -0.20 -8.66 8.49 30.62 0.26 -8.40 16 24 C -0.18 -4.90 9.03 22.36 0.20 -4.70 16 25 C -0.17 -4.01 9.03 22.36 0.20 -3.81 16 26 H 0.12 1.02 8.14 -2.39 -0.02 1.00 16 27 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 28 H 0.06 0.73 7.66 -2.39 -0.02 0.72 16 29 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 30 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 31 H 0.08 2.11 7.65 -2.38 -0.02 2.09 16 32 H 0.05 1.87 7.67 -2.39 -0.02 1.85 16 33 H 0.03 1.16 7.88 -2.39 -0.02 1.14 16 34 H 0.09 3.38 7.65 -2.39 -0.02 3.36 16 35 H 0.01 0.44 7.91 -2.39 -0.02 0.43 16 36 H 0.07 2.71 5.88 -2.39 -0.01 2.70 16 37 H 0.05 2.17 5.71 -2.38 -0.01 2.15 16 38 H -0.01 -0.51 7.94 -2.39 -0.02 -0.53 16 39 H 0.10 4.91 5.35 -2.39 -0.01 4.89 16 40 H 0.26 12.82 8.32 -92.71 -0.77 12.05 16 41 H 0.07 3.16 8.14 -2.39 -0.02 3.14 16 42 H 0.08 3.16 8.14 -2.39 -0.02 3.14 16 43 H 0.08 3.19 7.70 -2.39 -0.02 3.18 16 44 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 45 H 0.13 3.44 6.29 -2.91 -0.02 3.43 16 46 H 0.15 2.72 6.29 -2.91 -0.02 2.70 16 Total: -1.00 -59.46 366.14 3.39 -56.07 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.96 Total: 22.41 kcal Atomic # 6 Polarization: -38.23 SS G_CDS: 5.72 Total: -32.51 kcal Atomic # 7 Polarization: -68.26 SS G_CDS: -3.66 Total: -71.92 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.66 Total: -19.25 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -59.46 3.39 -56.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602767963.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.800 kcal (2) G-P(sol) polarization free energy of solvation -59.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.275 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds