Wall clock time and date at job start Tue Mar 31 2020 10:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00093 * 2 1 4 4 C 1.38730 * 120.05531 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94226 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.05886 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94576 * 179.71810 * 6 5 4 8 8 H 1.08997 * 109.47121 * 15.90306 * 7 6 5 9 9 C 1.52997 * 109.47344 * 255.89258 * 7 6 5 10 10 O 1.42894 * 109.47509 * 299.36457 * 9 7 6 11 11 N 1.46905 * 109.46925 * 135.89715 * 7 6 5 12 12 C 1.46901 * 111.00415 * 306.40555 * 11 7 6 13 13 C 1.46899 * 110.99840 * 182.45384 * 11 7 6 14 14 C 1.53003 * 109.47407 * 195.31051 * 13 11 7 15 15 C 1.50705 * 115.54734 * 275.10311 * 14 13 11 16 16 H 1.08002 * 120.00167 * 144.00991 * 15 14 13 17 17 C 1.37870 * 119.99723 * 324.00094 * 15 14 13 18 18 N 1.31511 * 120.00742 * 336.74700 * 17 15 14 19 19 Si 1.86802 * 119.99727 * 156.74329 * 17 15 14 20 20 H 1.48507 * 109.47129 * 60.00280 * 19 17 15 21 21 H 1.48502 * 109.47321 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47255 * 300.00349 * 19 17 15 23 23 C 1.52996 * 117.50293 * 129.38719 * 14 13 11 24 24 C 1.52997 * 60.00113 * 252.51303 * 23 14 13 25 25 C 1.38264 * 120.11031 * 359.97438 * 6 5 4 26 26 C 1.38144 * 120.05890 * 0.02562 * 25 6 5 27 27 H 1.08998 * 109.47288 * 299.99774 * 1 2 3 28 28 H 1.09003 * 109.47414 * 59.99438 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03155 * 359.96743 * 4 3 2 31 31 H 1.08008 * 119.96920 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46731 * 59.36916 * 9 7 6 33 33 H 1.09003 * 109.47197 * 179.36028 * 9 7 6 34 34 H 0.96704 * 114.00085 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46515 * 53.88016 * 12 11 7 36 36 H 1.08989 * 109.47402 * 173.88347 * 12 11 7 37 37 H 1.08994 * 109.47228 * 293.88704 * 12 11 7 38 38 H 1.09000 * 109.47505 * 315.30553 * 13 11 7 39 39 H 1.09000 * 109.47697 * 75.31090 * 13 11 7 40 40 H 0.96993 * 120.00458 * 185.03631 * 18 17 15 41 41 H 1.08999 * 117.49845 * 0.02562 * 23 14 13 42 42 H 1.08997 * 117.50100 * 145.02334 * 23 14 13 43 43 H 1.09000 * 117.50023 * 252.50943 * 24 23 14 44 44 H 1.09001 * 117.51510 * 107.48114 * 24 23 14 45 45 H 1.08001 * 119.97372 * 179.97438 * 25 6 5 46 46 H 1.08004 * 120.03442 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0184 0.0053 8 1 5.0328 4.8941 -0.2722 9 6 3.8986 5.6294 1.4053 10 8 2.5265 5.8062 1.7630 11 7 3.3262 5.9084 -0.9594 12 6 3.2563 5.2856 -2.2880 13 6 4.0037 7.2103 -1.0234 14 6 3.0966 8.2234 -1.7246 15 6 3.1687 8.2277 -3.2299 16 1 2.2778 8.4095 -3.8127 17 6 4.3721 7.9997 -3.8630 18 7 5.5019 8.2288 -3.2302 19 14 4.3976 7.3652 -5.6197 20 1 3.7038 8.3339 -6.5061 21 1 5.8043 7.2036 -6.0673 22 1 3.7050 6.0531 -5.6823 23 6 2.8598 9.5630 -1.0243 24 6 1.7407 8.5213 -1.0815 25 6 1.9211 3.6048 -0.0011 26 6 1.2915 2.3752 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0208 0.3799 0.0015 31 1 5.1346 2.5750 0.0000 32 1 4.3784 4.9636 2.1228 33 1 4.4034 6.5955 1.4123 34 1 2.3952 6.1900 2.6408 35 1 2.7845 4.3064 -2.2057 36 1 2.6691 5.9169 -2.9547 37 1 4.2632 5.1711 -2.6891 38 1 4.2220 7.5564 -0.0131 39 1 4.9344 7.1086 -1.5817 40 1 6.3468 8.1387 -3.6980 41 1 3.3506 9.7227 -0.0643 42 1 2.7563 10.4478 -1.6523 43 1 0.9009 8.7208 -1.7471 44 1 1.4948 7.9953 -0.1590 45 1 1.3342 4.5114 -0.0011 46 1 0.2129 2.3202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602783986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:33 Heat of formation + Delta-G solvation = -14.493999 kcal Electronic energy + Delta-G solvation = -26304.786051 eV Core-core repulsion = 22775.463964 eV Total energy + Delta-G solvation = -3529.322087 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.09911 -38.59064 -36.92407 -36.10780 -34.51121 -32.18299 -30.83777 -30.68484 -28.33816 -27.26959 -25.98354 -25.50282 -23.37376 -22.58275 -21.74487 -20.93307 -19.60470 -18.72578 -18.00347 -17.14932 -16.14998 -15.96772 -15.72573 -15.52850 -14.85231 -14.73605 -14.21563 -14.10416 -13.71814 -13.51122 -13.27544 -13.09032 -12.65936 -12.54336 -12.45785 -12.16242 -11.94346 -11.63923 -11.48886 -11.14103 -10.92048 -10.86976 -10.73542 -10.57016 -10.44622 -10.32123 -10.18999 -10.06570 -9.56821 -9.15236 -8.89677 -8.72522 -8.52922 -8.05077 -7.83838 -7.18349 -6.08759 -3.98813 1.57710 1.69940 3.27008 3.31708 3.33475 3.38462 3.99127 4.37505 4.57242 4.78088 4.93105 5.02617 5.06010 5.07615 5.08383 5.22173 5.36552 5.49502 5.63112 5.66550 5.70110 5.79579 5.86040 5.97806 6.01944 6.17930 6.34026 6.42751 6.49102 6.54763 6.62686 6.68870 6.74329 6.94480 6.96718 6.98430 7.03255 7.10642 7.22088 7.26442 7.51718 7.54998 7.56606 7.91804 7.98653 8.16478 8.21743 8.54696 8.92579 9.52330 10.93733 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004628 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.157537 B = 6048.191807 C = 6830.253589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.324 6.324 3 C 0.116 3.884 4 C -0.161 4.161 5 C -0.084 4.084 6 C -0.099 4.099 7 C 0.123 3.877 8 H 0.049 0.951 9 C 0.091 3.909 10 O -0.547 6.547 11 N -0.512 5.512 12 C 0.033 3.967 13 C 0.084 3.916 14 C 0.065 3.935 15 C -0.490 4.490 16 H 0.059 0.941 17 C 0.079 3.921 18 N -0.869 5.869 19 Si 0.871 3.129 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.272 1.272 23 C -0.207 4.207 24 C -0.189 4.189 25 C -0.025 4.025 26 C -0.217 4.217 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.123 0.877 31 H 0.122 0.878 32 H 0.037 0.963 33 H 0.050 0.950 34 H 0.365 0.635 35 H 0.044 0.956 36 H 0.092 0.908 37 H 0.011 0.989 38 H 0.039 0.961 39 H 0.081 0.919 40 H 0.261 0.739 41 H 0.058 0.942 42 H 0.072 0.928 43 H 0.065 0.935 44 H 0.076 0.924 45 H 0.142 0.858 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.623 -11.998 9.521 15.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.238 6.238 3 C 0.071 3.929 4 C -0.179 4.179 5 C -0.103 4.103 6 C -0.100 4.100 7 C 0.014 3.986 8 H 0.067 0.933 9 C 0.012 3.988 10 O -0.350 6.350 11 N -0.236 5.236 12 C -0.115 4.115 13 C -0.043 4.043 14 C 0.064 3.936 15 C -0.527 4.527 16 H 0.077 0.923 17 C -0.124 4.124 18 N -0.506 5.506 19 Si 0.699 3.301 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.197 1.197 23 C -0.246 4.246 24 C -0.227 4.227 25 C -0.043 4.043 26 C -0.236 4.236 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.113 0.887 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.055 0.945 33 H 0.068 0.932 34 H 0.210 0.790 35 H 0.062 0.938 36 H 0.110 0.890 37 H 0.030 0.970 38 H 0.057 0.943 39 H 0.099 0.901 40 H 0.071 0.929 41 H 0.076 0.924 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.160 0.840 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -4.881 -12.434 9.063 16.142 hybrid contribution 0.848 0.020 -0.704 1.102 sum -4.034 -12.414 8.359 15.500 Atomic orbital electron populations 1.22989 0.78800 1.03388 1.01418 1.86015 1.21091 1.27493 1.89176 1.19016 0.92325 0.83918 0.97637 1.20217 0.91249 0.98161 1.08318 1.20846 0.99494 0.91260 0.98660 1.19636 0.94088 0.93775 1.02488 1.20557 0.95347 0.89972 0.92737 0.93320 1.22185 0.83512 0.98479 0.94592 1.86632 1.24626 1.85978 1.37788 1.62030 1.51982 1.02670 1.06886 1.22449 0.99806 0.98468 0.90823 1.21863 0.98080 0.86857 0.97459 1.18734 0.91578 0.90484 0.92798 1.20466 0.94324 1.48609 0.89252 0.92275 1.24876 0.95467 0.94805 0.97295 1.69967 0.97733 1.46010 1.36845 0.86980 0.77091 0.80426 0.85638 1.20211 1.21365 1.19740 1.22961 1.05091 0.95735 1.00765 1.22675 0.93219 1.04639 1.02169 1.20968 0.94231 0.96981 0.92147 1.21283 0.99730 0.92515 1.10056 0.92800 0.92699 0.88687 0.85882 0.85973 0.94451 0.93217 0.79025 0.93765 0.88965 0.97004 0.94299 0.90130 0.92865 0.92364 0.90970 0.91641 0.90553 0.84041 0.85981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 9.81 101.05 0.99 1.26 16 2 O -0.32 -4.23 10.50 -19.42 -0.20 -4.43 16 3 C 0.12 1.65 6.69 -39.22 -0.26 1.39 16 4 C -0.16 -2.25 9.99 -39.43 -0.39 -2.65 16 5 C -0.08 -1.21 9.66 -39.61 -0.38 -1.59 16 6 C -0.10 -1.58 3.50 -104.61 -0.37 -1.95 16 7 C 0.12 2.09 2.11 -68.87 -0.15 1.95 16 8 H 0.05 0.85 7.96 -51.93 -0.41 0.44 16 9 C 0.09 1.35 6.38 37.16 0.24 1.58 16 10 O -0.55 -8.03 11.82 -35.23 -0.42 -8.45 16 11 N -0.51 -10.22 3.82 -236.29 -0.90 -11.13 16 12 C 0.03 0.69 8.54 60.07 0.51 1.20 16 13 C 0.08 1.89 4.63 -3.82 -0.02 1.87 16 14 C 0.06 1.58 1.64 -155.66 -0.25 1.32 16 15 C -0.49 -12.96 6.87 -34.44 -0.24 -13.20 16 16 H 0.06 1.60 7.92 -52.49 -0.42 1.19 16 17 C 0.08 2.07 4.73 -17.82 -0.08 1.99 16 18 N -0.87 -23.54 11.28 55.43 0.63 -22.92 16 19 Si 0.87 20.49 29.60 -169.99 -5.03 15.46 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 23 C -0.21 -4.79 9.88 -26.73 -0.26 -5.05 16 24 C -0.19 -4.22 9.84 -26.73 -0.26 -4.48 16 25 C -0.03 -0.40 7.29 -39.61 -0.29 -0.69 16 26 C -0.22 -3.10 9.04 -39.43 -0.36 -3.46 16 27 H 0.05 0.44 7.66 -51.93 -0.40 0.05 16 28 H 0.05 0.48 7.66 -51.93 -0.40 0.08 16 29 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.12 1.51 8.06 -52.49 -0.42 1.08 16 31 H 0.12 1.54 8.00 -52.48 -0.42 1.12 16 32 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.77 6.20 -51.93 -0.32 0.44 16 34 H 0.36 3.72 9.12 45.56 0.42 4.14 16 35 H 0.04 0.86 5.95 -51.93 -0.31 0.55 16 36 H 0.09 2.15 6.04 -51.94 -0.31 1.84 16 37 H 0.01 0.26 8.08 -51.93 -0.42 -0.16 16 38 H 0.04 0.84 5.53 -51.93 -0.29 0.56 16 39 H 0.08 2.05 5.33 -51.93 -0.28 1.77 16 40 H 0.26 6.83 8.32 -40.82 -0.34 6.49 16 41 H 0.06 1.27 8.05 -51.93 -0.42 0.85 16 42 H 0.07 1.71 8.14 -51.93 -0.42 1.29 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.03 16 44 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 45 H 0.14 2.47 7.28 -52.49 -0.38 2.08 16 46 H 0.12 1.49 6.30 -52.48 -0.33 1.16 16 LS Contribution 363.09 15.07 5.47 5.47 Total: -1.00 -29.04 363.09 -8.39 -37.43 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -6.36 Total: 9.06 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.57 Total: -20.50 kcal Atomic # 7 Polarization: -33.77 SS G_CDS: -0.28 Total: -34.04 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: -0.62 Total: -12.88 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.03 Total: 15.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.04 -8.39 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.935 kcal (2) G-P(sol) polarization free energy of solvation -29.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds