Wall clock time and date at job start Tue Mar 31 2020 10:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35899 * 117.00093 * 2 1 4 4 C 1.38730 * 120.05531 * 179.97438 * 3 2 1 5 5 C 1.38148 * 119.94226 * 179.97438 * 4 3 2 6 6 C 1.38258 * 120.05886 * 0.02562 * 5 4 3 7 7 C 1.50697 * 119.94576 * 179.71810 * 6 5 4 8 8 H 1.08997 * 109.47121 * 15.90306 * 7 6 5 9 9 C 1.52997 * 109.47344 * 255.89258 * 7 6 5 10 10 O 1.42894 * 109.47509 * 299.36457 * 9 7 6 11 11 N 1.46905 * 109.46925 * 135.89715 * 7 6 5 12 12 C 1.46901 * 111.00415 * 306.40555 * 11 7 6 13 13 C 1.46899 * 110.99840 * 182.45384 * 11 7 6 14 14 C 1.53003 * 109.47407 * 195.31051 * 13 11 7 15 15 C 1.50705 * 115.54734 * 275.10311 * 14 13 11 16 16 H 1.08002 * 120.00167 * 144.00991 * 15 14 13 17 17 C 1.37870 * 119.99723 * 324.00094 * 15 14 13 18 18 N 1.31511 * 120.00742 * 336.74700 * 17 15 14 19 19 Si 1.86802 * 119.99727 * 156.74329 * 17 15 14 20 20 H 1.48507 * 109.47129 * 60.00280 * 19 17 15 21 21 H 1.48502 * 109.47321 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47255 * 300.00349 * 19 17 15 23 23 C 1.52996 * 117.50293 * 129.38719 * 14 13 11 24 24 C 1.52997 * 60.00113 * 252.51303 * 23 14 13 25 25 C 1.38264 * 120.11031 * 359.97438 * 6 5 4 26 26 C 1.38144 * 120.05890 * 0.02562 * 25 6 5 27 27 H 1.08998 * 109.47288 * 299.99774 * 1 2 3 28 28 H 1.09003 * 109.47414 * 59.99438 * 1 2 3 29 29 H 1.08999 * 109.47189 * 179.97438 * 1 2 3 30 30 H 1.08000 * 120.03155 * 359.96743 * 4 3 2 31 31 H 1.08008 * 119.96920 * 180.02562 * 5 4 3 32 32 H 1.09005 * 109.46731 * 59.36916 * 9 7 6 33 33 H 1.09003 * 109.47197 * 179.36028 * 9 7 6 34 34 H 0.96704 * 114.00085 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46515 * 53.88016 * 12 11 7 36 36 H 1.08989 * 109.47402 * 173.88347 * 12 11 7 37 37 H 1.08994 * 109.47228 * 293.88704 * 12 11 7 38 38 H 1.09000 * 109.47505 * 315.30553 * 13 11 7 39 39 H 1.09000 * 109.47697 * 75.31090 * 13 11 7 40 40 H 0.96993 * 120.00458 * 185.03631 * 18 17 15 41 41 H 1.08999 * 117.49845 * 0.02562 * 23 14 13 42 42 H 1.08997 * 117.50100 * 145.02334 * 23 14 13 43 43 H 1.09000 * 117.50023 * 252.50943 * 24 23 14 44 44 H 1.09001 * 117.51510 * 107.48114 * 24 23 14 45 45 H 1.08001 * 119.97372 * 179.97438 * 25 6 5 46 46 H 1.08004 * 120.03442 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3020 3.6757 -0.0005 7 6 3.9861 5.0184 0.0053 8 1 5.0328 4.8941 -0.2722 9 6 3.8986 5.6294 1.4053 10 8 2.5265 5.8062 1.7630 11 7 3.3262 5.9084 -0.9594 12 6 3.2563 5.2856 -2.2880 13 6 4.0037 7.2103 -1.0234 14 6 3.0966 8.2234 -1.7246 15 6 3.1687 8.2277 -3.2299 16 1 2.2778 8.4095 -3.8127 17 6 4.3721 7.9997 -3.8630 18 7 5.5019 8.2288 -3.2302 19 14 4.3976 7.3652 -5.6197 20 1 3.7038 8.3339 -6.5061 21 1 5.8043 7.2036 -6.0673 22 1 3.7050 6.0531 -5.6823 23 6 2.8598 9.5630 -1.0243 24 6 1.7407 8.5213 -1.0815 25 6 1.9211 3.6048 -0.0011 26 6 1.2915 2.3752 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 4.0208 0.3799 0.0015 31 1 5.1346 2.5750 0.0000 32 1 4.3784 4.9636 2.1228 33 1 4.4034 6.5955 1.4123 34 1 2.3952 6.1900 2.6408 35 1 2.7845 4.3064 -2.2057 36 1 2.6691 5.9169 -2.9547 37 1 4.2632 5.1711 -2.6891 38 1 4.2220 7.5564 -0.0131 39 1 4.9344 7.1086 -1.5817 40 1 6.3468 8.1387 -3.6980 41 1 3.3506 9.7227 -0.0643 42 1 2.7563 10.4478 -1.6523 43 1 0.9009 8.7208 -1.7471 44 1 1.4948 7.9953 -0.1590 45 1 1.3342 4.5114 -0.0011 46 1 0.2129 2.3202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602783986.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:12:32 Heat of formation + Delta-G solvation = -32.530580 kcal Electronic energy + Delta-G solvation = -26305.568176 eV Core-core repulsion = 22775.463964 eV Total energy + Delta-G solvation = -3530.104211 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.19880 -39.88959 -38.40886 -37.32658 -35.99593 -34.19559 -31.96624 -31.93571 -29.54131 -28.38531 -27.71140 -27.20639 -24.81096 -23.76874 -23.00139 -22.73251 -21.02688 -20.50160 -19.01508 -18.38643 -17.91667 -17.11874 -16.85949 -16.68483 -16.57659 -16.13590 -15.78624 -15.45725 -14.97646 -14.82534 -14.71794 -14.43972 -14.05237 -13.95502 -13.73615 -13.53614 -13.31396 -13.13472 -12.84549 -12.81410 -12.65144 -12.43496 -12.23790 -12.15511 -11.92957 -11.90080 -11.66995 -11.46831 -11.02128 -10.93450 -10.60272 -10.43160 -9.94748 -9.83698 -8.95589 -8.86099 -8.10063 -6.04990 0.46857 0.56507 1.37031 1.42206 1.47636 2.41367 2.43060 2.83488 2.99533 3.20843 3.57185 3.83715 3.91491 3.99890 4.04229 4.27237 4.34741 4.40771 4.41500 4.51222 4.55736 4.59310 4.63278 4.69439 4.73876 4.78467 4.82120 4.84823 4.87490 4.93095 5.11416 5.18516 5.22027 5.28684 5.37182 5.39359 5.44100 5.52825 5.62707 5.71232 5.85089 5.88722 5.99386 6.43906 6.50521 6.53871 6.58716 6.90649 7.10835 7.47564 8.90762 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015229 B = 0.004628 C = 0.004098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1838.157537 B = 6048.191807 C = 6830.253589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.335 6.335 3 C 0.114 3.886 4 C -0.165 4.165 5 C -0.085 4.085 6 C -0.112 4.112 7 C 0.119 3.881 8 H 0.043 0.957 9 C 0.097 3.903 10 O -0.562 6.562 11 N -0.507 5.507 12 C 0.047 3.953 13 C 0.098 3.902 14 C 0.041 3.959 15 C -0.504 4.504 16 H 0.044 0.956 17 C 0.049 3.951 18 N -0.890 5.890 19 Si 0.918 3.082 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.269 1.269 23 C -0.207 4.207 24 C -0.168 4.168 25 C -0.035 4.035 26 C -0.218 4.218 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.121 0.879 30 H 0.141 0.859 31 H 0.138 0.862 32 H 0.062 0.938 33 H 0.042 0.958 34 H 0.385 0.615 35 H 0.058 0.942 36 H 0.066 0.934 37 H -0.007 1.007 38 H 0.046 0.954 39 H 0.051 0.949 40 H 0.261 0.739 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.063 0.937 44 H 0.087 0.913 45 H 0.124 0.876 46 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.221 -13.680 10.455 17.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.249 6.249 3 C 0.068 3.932 4 C -0.183 4.183 5 C -0.103 4.103 6 C -0.113 4.113 7 C 0.010 3.990 8 H 0.061 0.939 9 C 0.019 3.981 10 O -0.368 6.368 11 N -0.231 5.231 12 C -0.102 4.102 13 C -0.029 4.029 14 C 0.040 3.960 15 C -0.541 4.541 16 H 0.063 0.937 17 C -0.152 4.152 18 N -0.527 5.527 19 Si 0.744 3.256 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.194 1.194 23 C -0.246 4.246 24 C -0.206 4.206 25 C -0.054 4.054 26 C -0.237 4.237 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.139 0.861 30 H 0.158 0.842 31 H 0.156 0.844 32 H 0.080 0.920 33 H 0.060 0.940 34 H 0.233 0.767 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.012 0.988 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.090 0.910 42 H 0.079 0.921 43 H 0.081 0.919 44 H 0.106 0.894 45 H 0.142 0.858 46 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -5.499 -14.115 10.015 18.160 hybrid contribution 0.954 0.484 -0.950 1.430 sum -4.545 -13.632 9.065 16.990 Atomic orbital electron populations 1.23295 0.76768 1.05393 1.02007 1.86011 1.23213 1.26793 1.88878 1.19164 0.92653 0.84387 0.96951 1.20478 0.91586 0.98634 1.07637 1.21013 1.00309 0.90919 0.98095 1.19562 0.94220 0.93507 1.04023 1.20667 0.94871 0.90401 0.93055 0.93875 1.22073 0.83852 0.98397 0.93795 1.86581 1.24359 1.86314 1.39568 1.61983 1.52099 1.02350 1.06665 1.22232 0.98247 0.98607 0.91089 1.21573 0.96495 0.87866 0.96977 1.18872 0.93370 0.91647 0.92132 1.20602 0.93877 1.49031 0.90631 0.93743 1.25311 0.95136 0.94739 1.00050 1.70051 0.97972 1.46707 1.37942 0.86249 0.77048 0.79945 0.82389 1.20048 1.21075 1.19448 1.22943 1.05621 0.94999 1.01007 1.22586 0.92317 1.03594 1.02077 1.20831 0.94165 0.96975 0.93382 1.21423 1.00749 0.91952 1.09533 0.91916 0.92351 0.86117 0.84167 0.84435 0.91974 0.94035 0.76732 0.92297 0.91512 0.98838 0.93549 0.93065 0.92931 0.91003 0.92089 0.91887 0.89410 0.85812 0.84226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.81 113.37 1.11 1.42 16 2 O -0.33 -7.92 10.50 -92.42 -0.97 -8.89 16 3 C 0.11 3.00 6.69 22.51 0.15 3.15 16 4 C -0.16 -4.26 9.99 22.37 0.22 -4.04 16 5 C -0.08 -2.30 9.66 22.25 0.21 -2.08 16 6 C -0.11 -3.45 3.50 -19.85 -0.07 -3.52 16 7 C 0.12 3.95 2.11 44.17 0.09 4.05 16 8 H 0.04 1.49 7.96 -2.39 -0.02 1.47 16 9 C 0.10 2.74 6.38 71.98 0.46 3.20 16 10 O -0.56 -15.54 11.82 -148.98 -1.76 -17.30 16 11 N -0.51 -20.23 3.82 -901.49 -3.44 -23.67 16 12 C 0.05 1.99 8.54 127.69 1.09 3.08 16 13 C 0.10 4.45 4.63 86.30 0.40 4.85 16 14 C 0.04 1.98 1.64 -52.93 -0.09 1.89 16 15 C -0.50 -27.14 6.87 25.60 0.18 -26.97 16 16 H 0.04 2.46 7.92 -2.91 -0.02 2.44 16 17 C 0.05 2.62 4.73 84.65 0.40 3.02 16 18 N -0.89 -48.86 11.28 21.44 0.24 -48.62 16 19 Si 0.92 42.42 29.60 68.60 2.03 44.45 16 20 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 21 H -0.29 -12.98 7.11 99.48 0.71 -12.27 16 22 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 23 C -0.21 -9.52 9.88 30.59 0.30 -9.22 16 24 C -0.17 -7.40 9.84 30.59 0.30 -7.10 16 25 C -0.04 -1.08 7.29 22.25 0.16 -0.92 16 26 C -0.22 -5.84 9.04 22.37 0.20 -5.64 16 27 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 28 H 0.06 0.87 7.66 -2.39 -0.02 0.85 16 29 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.14 3.07 8.06 -2.91 -0.02 3.05 16 31 H 0.14 3.20 8.00 -2.91 -0.02 3.18 16 32 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 33 H 0.04 1.23 6.20 -2.39 -0.01 1.22 16 34 H 0.38 7.03 9.12 -74.05 -0.68 6.35 16 35 H 0.06 2.29 5.95 -2.39 -0.01 2.28 16 36 H 0.07 3.17 6.04 -2.39 -0.01 3.16 16 37 H -0.01 -0.32 8.08 -2.39 -0.02 -0.34 16 38 H 0.05 2.00 5.53 -2.39 -0.01 1.99 16 39 H 0.05 2.66 5.33 -2.39 -0.01 2.65 16 40 H 0.26 13.81 8.32 -92.71 -0.77 13.04 16 41 H 0.07 3.07 8.05 -2.39 -0.02 3.05 16 42 H 0.06 2.90 8.14 -2.39 -0.02 2.88 16 43 H 0.06 2.78 8.14 -2.39 -0.02 2.76 16 44 H 0.09 3.65 8.14 -2.39 -0.02 3.63 16 45 H 0.12 4.24 7.28 -2.91 -0.02 4.22 16 46 H 0.14 3.12 6.30 -2.91 -0.02 3.10 16 Total: -1.00 -61.64 363.09 1.54 -60.10 By element: Atomic # 1 Polarization: 28.45 SS G_CDS: 0.30 Total: 28.76 kcal Atomic # 6 Polarization: -39.95 SS G_CDS: 5.13 Total: -34.82 kcal Atomic # 7 Polarization: -69.09 SS G_CDS: -3.20 Total: -72.29 kcal Atomic # 8 Polarization: -23.47 SS G_CDS: -2.73 Total: -26.20 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -61.64 1.54 -60.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602783986.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.569 kcal (2) G-P(sol) polarization free energy of solvation -61.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds