Wall clock time and date at job start Tue Mar 31 2020 10:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 117.00043 * 2 1 4 4 C 1.38721 * 120.05396 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94600 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.05343 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94340 * 179.72444 * 6 5 4 8 8 H 1.08999 * 109.47362 * 342.32817 * 7 6 5 9 9 C 1.52997 * 109.47060 * 102.33331 * 7 6 5 10 10 C 1.53011 * 109.47046 * 184.39469 * 9 7 6 11 11 O 1.42900 * 109.46848 * 174.32516 * 10 9 7 12 12 N 1.46902 * 109.47041 * 222.33332 * 7 6 5 13 13 C 1.46891 * 111.00158 * 140.26230 * 12 7 6 14 14 C 1.53004 * 109.47312 * 274.11785 * 13 12 7 15 15 C 1.50704 * 115.55060 * 160.64313 * 14 13 12 16 16 H 1.07989 * 119.99707 * 142.81196 * 15 14 13 17 17 C 1.37878 * 119.99688 * 322.80775 * 15 14 13 18 18 N 1.31506 * 120.00448 * 340.67024 * 17 15 14 19 19 Si 1.86804 * 119.99568 * 160.66343 * 17 15 14 20 20 H 1.48503 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47204 * 120.00145 * 19 17 15 22 22 H 1.48503 * 109.47211 * 240.00384 * 19 17 15 23 23 C 1.52998 * 117.49625 * 14.93806 * 14 13 12 24 24 C 1.52993 * 59.99916 * 252.50923 * 23 14 13 25 25 C 1.38269 * 120.10829 * 359.97438 * 6 5 4 26 26 C 1.38144 * 120.05827 * 0.02562 * 25 6 5 27 27 H 1.09009 * 109.46587 * 59.99838 * 1 2 3 28 28 H 1.09003 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46984 * 300.00179 * 1 2 3 30 30 H 1.08001 * 120.03247 * 359.96151 * 4 3 2 31 31 H 1.08001 * 119.97606 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47217 * 304.39243 * 9 7 6 33 33 H 1.09000 * 109.47271 * 64.39828 * 9 7 6 34 34 H 1.09004 * 109.46495 * 294.32398 * 10 9 7 35 35 H 1.09000 * 109.46823 * 54.32119 * 10 9 7 36 36 H 0.96698 * 113.99322 * 180.02562 * 11 10 9 37 37 H 1.00904 * 111.00148 * 16.30655 * 12 7 6 38 38 H 1.09004 * 109.47632 * 34.11996 * 13 12 7 39 39 H 1.09004 * 109.47642 * 154.12017 * 13 12 7 40 40 H 0.97006 * 120.00159 * 185.01215 * 18 17 15 41 41 H 1.09003 * 117.49898 * 359.97438 * 23 14 13 42 42 H 1.08994 * 117.50254 * 145.01792 * 23 14 13 43 43 H 1.09000 * 117.49874 * 252.51177 * 24 23 14 44 44 H 1.09005 * 117.52145 * 107.48425 * 24 23 14 45 45 H 1.08000 * 119.96880 * 179.97438 * 25 6 5 46 46 H 1.07996 * 120.02611 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 0.0052 8 1 5.0223 4.8970 0.3211 9 6 3.9489 5.6158 -1.4029 10 6 4.7378 6.9267 -1.4218 11 8 4.8151 7.4167 -2.7619 12 7 3.2924 5.9176 0.9370 13 6 4.2511 6.7387 1.6883 14 6 4.7264 5.9679 2.9216 15 6 6.0139 6.4540 3.5356 16 1 6.1359 6.4494 4.6086 17 6 7.0361 6.9045 2.7274 18 7 7.0637 6.5724 1.4553 19 14 8.3818 7.9870 3.4396 20 1 8.1224 8.2133 4.8841 21 1 9.6965 7.3170 3.2722 22 1 8.3966 9.2907 2.7286 23 6 4.4450 4.4647 2.9669 24 6 3.6563 5.4181 3.8668 25 6 1.9211 3.6047 -0.0011 26 6 1.2915 2.3751 -0.0005 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0209 0.3799 0.0016 31 1 5.1346 2.5750 0.0000 32 1 4.3943 4.9135 -2.1074 33 1 2.9149 5.8099 -1.6880 34 1 4.2348 7.6625 -0.7943 35 1 5.7437 6.7509 -1.0406 36 1 5.3029 8.2470 -2.8495 37 1 2.6933 5.3988 1.5616 38 1 5.1061 6.9714 1.0535 39 1 3.7690 7.6646 2.0022 40 1 7.8195 6.8280 0.9035 41 1 3.9208 4.0250 2.1183 42 1 5.1911 3.8270 3.4407 43 1 3.8837 5.4076 4.9327 44 1 2.6136 5.6059 3.6104 45 1 1.3343 4.5114 -0.0011 46 1 0.2130 2.3202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602797970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:38 Heat of formation + Delta-G solvation = -32.755636 kcal Electronic energy + Delta-G solvation = -26146.119143 eV Core-core repulsion = 22616.005173 eV Total energy + Delta-G solvation = -3530.113971 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.15157 -38.66712 -36.94872 -36.38659 -34.21910 -32.29054 -30.90655 -30.38136 -29.54926 -27.48047 -26.08489 -25.01419 -23.26468 -22.33867 -21.49766 -21.12900 -19.81324 -18.74534 -18.08507 -17.01711 -16.31852 -16.10079 -15.73042 -15.66112 -14.98574 -14.71838 -14.45644 -14.09183 -13.80411 -13.45480 -13.33462 -13.10627 -12.92349 -12.63793 -12.54708 -11.96280 -11.90725 -11.53520 -11.43352 -11.19602 -11.01038 -10.87054 -10.73380 -10.68527 -10.48966 -10.41998 -10.20628 -9.99220 -9.64283 -9.32087 -9.22765 -8.78626 -8.73264 -7.95770 -7.88343 -7.53839 -6.17013 -4.13226 1.55432 1.61545 3.19819 3.30235 3.30431 3.35458 3.95224 4.30232 4.68378 4.87734 4.88824 4.99527 5.04774 5.07475 5.16821 5.25682 5.34390 5.50716 5.63538 5.65646 5.78132 5.81857 5.97908 6.07577 6.11543 6.19096 6.36777 6.39944 6.44480 6.48098 6.49676 6.55178 6.64441 6.66906 6.72266 6.89108 6.92379 7.01273 7.11956 7.17059 7.34460 7.48013 7.49791 7.83414 7.99453 8.08783 8.28257 8.42842 8.81498 9.42959 10.84812 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.004559 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.893006 B = 6139.974347 C = 7161.651139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.322 6.322 3 C 0.115 3.885 4 C -0.151 4.151 5 C -0.068 4.068 6 C -0.111 4.111 7 C 0.128 3.872 8 H 0.091 0.909 9 C -0.091 4.091 10 C 0.074 3.926 11 O -0.587 6.587 12 N -0.688 5.688 13 C 0.070 3.930 14 C 0.029 3.971 15 C -0.490 4.490 16 H 0.059 0.941 17 C 0.074 3.926 18 N -0.873 5.873 19 Si 0.888 3.112 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.281 1.281 23 C -0.214 4.214 24 C -0.217 4.217 25 C -0.070 4.070 26 C -0.209 4.209 27 H 0.053 0.947 28 H 0.095 0.905 29 H 0.054 0.946 30 H 0.126 0.874 31 H 0.131 0.869 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.372 0.628 37 H 0.331 0.669 38 H 0.128 0.872 39 H 0.048 0.952 40 H 0.262 0.738 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.072 0.928 44 H 0.066 0.934 45 H 0.130 0.870 46 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.350 -6.521 -5.787 12.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.236 6.236 3 C 0.070 3.930 4 C -0.170 4.170 5 C -0.087 4.087 6 C -0.112 4.112 7 C 0.018 3.982 8 H 0.109 0.891 9 C -0.129 4.129 10 C -0.003 4.003 11 O -0.392 6.392 12 N -0.319 5.319 13 C -0.059 4.059 14 C 0.028 3.972 15 C -0.527 4.527 16 H 0.077 0.923 17 C -0.128 4.128 18 N -0.511 5.511 19 Si 0.715 3.285 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.207 1.207 23 C -0.252 4.252 24 C -0.255 4.255 25 C -0.089 4.089 26 C -0.228 4.228 27 H 0.072 0.928 28 H 0.114 0.886 29 H 0.072 0.928 30 H 0.144 0.856 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.080 0.920 36 H 0.218 0.782 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.084 0.916 45 H 0.148 0.852 46 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -9.661 -6.675 -6.557 13.450 hybrid contribution 1.092 0.351 1.386 1.799 sum -8.569 -6.324 -5.171 11.839 Atomic orbital electron populations 1.22996 0.78856 1.03480 1.01292 1.86040 1.21029 1.27357 1.89137 1.19000 0.92357 0.83903 0.97707 1.20361 0.91216 0.98521 1.06892 1.20981 1.00239 0.90880 0.96551 1.20116 0.93604 0.95598 1.01834 1.20487 0.98504 0.86523 0.92688 0.89091 1.21424 1.00139 0.95532 0.95850 1.22353 1.00317 0.95868 0.81734 1.86382 1.79145 1.43821 1.29878 1.60979 1.22392 1.26157 1.22323 1.22096 0.95232 0.93771 0.94778 1.19753 0.93225 0.90377 0.93889 1.20554 0.97820 1.41529 0.92828 0.92269 1.24908 0.97665 0.95463 0.94808 1.69828 1.30321 1.44455 1.06456 0.86608 0.81313 0.80903 0.79633 1.19752 1.21146 1.20695 1.23266 1.03267 0.97154 1.01499 1.22871 0.95969 1.09732 0.96901 1.20862 0.94253 0.96986 0.96755 1.21161 0.99612 0.92411 1.09600 0.92838 0.88616 0.92755 0.85554 0.85113 0.92272 0.91959 0.92919 0.92023 0.78215 0.84968 0.85497 0.93410 0.92822 0.90375 0.91063 0.90978 0.91565 0.85246 0.85906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.81 101.05 0.99 1.25 16 2 O -0.32 -4.21 10.50 -19.44 -0.20 -4.41 16 3 C 0.11 1.65 6.69 -39.22 -0.26 1.39 16 4 C -0.15 -2.24 9.99 -39.44 -0.39 -2.63 16 5 C -0.07 -1.08 9.25 -39.60 -0.37 -1.44 16 6 C -0.11 -1.81 3.06 -104.60 -0.32 -2.13 16 7 C 0.13 2.30 1.31 -68.87 -0.09 2.21 16 8 H 0.09 1.94 7.01 -51.93 -0.36 1.57 16 9 C -0.09 -1.58 5.23 -26.73 -0.14 -1.72 16 10 C 0.07 1.32 5.72 37.16 0.21 1.53 16 11 O -0.59 -9.66 13.66 -35.23 -0.48 -10.14 16 12 N -0.69 -12.84 5.67 -107.96 -0.61 -13.45 16 13 C 0.07 1.52 4.94 -3.83 -0.02 1.50 16 14 C 0.03 0.69 2.25 -155.66 -0.35 0.34 16 15 C -0.49 -12.79 8.99 -34.44 -0.31 -13.10 16 16 H 0.06 1.59 7.89 -52.49 -0.41 1.17 16 17 C 0.07 1.89 5.09 -17.82 -0.09 1.80 16 18 N -0.87 -21.91 11.07 55.43 0.61 -21.30 16 19 Si 0.89 19.93 29.58 -169.99 -5.03 14.90 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 23 C -0.21 -4.73 8.83 -26.74 -0.24 -4.97 16 24 C -0.22 -4.66 9.51 -26.74 -0.25 -4.91 16 25 C -0.07 -1.04 8.76 -39.60 -0.35 -1.39 16 26 C -0.21 -2.85 9.04 -39.43 -0.36 -3.20 16 27 H 0.05 0.42 7.66 -51.92 -0.40 0.02 16 28 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.45 7.66 -51.93 -0.40 0.05 16 30 H 0.13 1.67 8.06 -52.49 -0.42 1.24 16 31 H 0.13 2.04 8.02 -52.49 -0.42 1.62 16 32 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.05 0.97 7.05 -51.93 -0.37 0.61 16 35 H 0.06 1.20 7.83 -51.93 -0.41 0.79 16 36 H 0.37 4.50 9.12 45.56 0.42 4.92 16 37 H 0.33 6.14 4.76 -39.29 -0.19 5.95 16 38 H 0.13 2.93 3.29 -51.93 -0.17 2.76 16 39 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 40 H 0.26 6.31 8.32 -40.82 -0.34 5.97 16 41 H 0.08 1.60 3.40 -51.93 -0.18 1.42 16 42 H 0.07 1.67 8.14 -51.93 -0.42 1.25 16 43 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 44 H 0.07 1.30 7.39 -51.93 -0.38 0.92 16 45 H 0.13 1.84 7.68 -52.49 -0.40 1.43 16 46 H 0.12 1.36 6.30 -52.49 -0.33 1.03 16 LS Contribution 360.53 15.07 5.43 5.43 Total: -1.00 -27.50 360.53 -8.71 -36.21 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: -6.10 Total: 18.24 kcal Atomic # 6 Polarization: -23.16 SS G_CDS: -2.33 Total: -25.49 kcal Atomic # 7 Polarization: -34.75 SS G_CDS: 0.00 Total: -34.75 kcal Atomic # 8 Polarization: -13.87 SS G_CDS: -0.69 Total: -14.55 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -5.03 Total: 14.90 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -27.50 -8.71 -36.21 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.456 kcal (2) G-P(sol) polarization free energy of solvation -27.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds