Wall clock time and date at job start Tue Mar 31 2020 10:32:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42905 * 1 3 3 C 1.35903 * 117.00043 * 2 1 4 4 C 1.38721 * 120.05396 * 179.97438 * 3 2 1 5 5 C 1.38147 * 119.94600 * 179.97438 * 4 3 2 6 6 C 1.38272 * 120.05343 * 0.02562 * 5 4 3 7 7 C 1.50694 * 119.94340 * 179.72444 * 6 5 4 8 8 H 1.08999 * 109.47362 * 342.32817 * 7 6 5 9 9 C 1.52997 * 109.47060 * 102.33331 * 7 6 5 10 10 C 1.53011 * 109.47046 * 184.39469 * 9 7 6 11 11 O 1.42900 * 109.46848 * 174.32516 * 10 9 7 12 12 N 1.46902 * 109.47041 * 222.33332 * 7 6 5 13 13 C 1.46891 * 111.00158 * 140.26230 * 12 7 6 14 14 C 1.53004 * 109.47312 * 274.11785 * 13 12 7 15 15 C 1.50704 * 115.55060 * 160.64313 * 14 13 12 16 16 H 1.07989 * 119.99707 * 142.81196 * 15 14 13 17 17 C 1.37878 * 119.99688 * 322.80775 * 15 14 13 18 18 N 1.31506 * 120.00448 * 340.67024 * 17 15 14 19 19 Si 1.86804 * 119.99568 * 160.66343 * 17 15 14 20 20 H 1.48503 * 109.46937 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47204 * 120.00145 * 19 17 15 22 22 H 1.48503 * 109.47211 * 240.00384 * 19 17 15 23 23 C 1.52998 * 117.49625 * 14.93806 * 14 13 12 24 24 C 1.52993 * 59.99916 * 252.50923 * 23 14 13 25 25 C 1.38269 * 120.10829 * 359.97438 * 6 5 4 26 26 C 1.38144 * 120.05827 * 0.02562 * 25 6 5 27 27 H 1.09009 * 109.46587 * 59.99838 * 1 2 3 28 28 H 1.09003 * 109.47203 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46984 * 300.00179 * 1 2 3 30 30 H 1.08001 * 120.03247 * 359.96151 * 4 3 2 31 31 H 1.08001 * 119.97606 * 180.02562 * 5 4 3 32 32 H 1.08997 * 109.47217 * 304.39243 * 9 7 6 33 33 H 1.09000 * 109.47271 * 64.39828 * 9 7 6 34 34 H 1.09004 * 109.46495 * 294.32398 * 10 9 7 35 35 H 1.09000 * 109.46823 * 54.32119 * 10 9 7 36 36 H 0.96698 * 113.99322 * 180.02562 * 11 10 9 37 37 H 1.00904 * 111.00148 * 16.30655 * 12 7 6 38 38 H 1.09004 * 109.47632 * 34.11996 * 13 12 7 39 39 H 1.09004 * 109.47642 * 154.12017 * 13 12 7 40 40 H 0.97006 * 120.00159 * 185.01215 * 18 17 15 41 41 H 1.09003 * 117.49898 * 359.97438 * 23 14 13 42 42 H 1.08994 * 117.50254 * 145.01792 * 23 14 13 43 43 H 1.09000 * 117.49874 * 252.51177 * 24 23 14 44 44 H 1.09005 * 117.52145 * 107.48425 * 24 23 14 45 45 H 1.08000 * 119.96880 * 179.97438 * 25 6 5 46 46 H 1.07996 * 120.02611 * 180.02562 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 3.4313 1.2848 0.0005 5 6 4.0561 2.5169 0.0000 6 6 3.3020 3.6758 -0.0005 7 6 3.9862 5.0185 0.0052 8 1 5.0223 4.8970 0.3211 9 6 3.9489 5.6158 -1.4029 10 6 4.7378 6.9267 -1.4218 11 8 4.8151 7.4167 -2.7619 12 7 3.2924 5.9176 0.9370 13 6 4.2511 6.7387 1.6883 14 6 4.7264 5.9679 2.9216 15 6 6.0139 6.4540 3.5356 16 1 6.1359 6.4494 4.6086 17 6 7.0361 6.9045 2.7274 18 7 7.0637 6.5724 1.4553 19 14 8.3818 7.9870 3.4396 20 1 8.1224 8.2133 4.8841 21 1 9.6965 7.3170 3.2722 22 1 8.3966 9.2907 2.7286 23 6 4.4450 4.4647 2.9669 24 6 3.6563 5.4181 3.8668 25 6 1.9211 3.6047 -0.0011 26 6 1.2915 2.3751 -0.0005 27 1 -0.3633 0.5139 -0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.0209 0.3799 0.0016 31 1 5.1346 2.5750 0.0000 32 1 4.3943 4.9135 -2.1074 33 1 2.9149 5.8099 -1.6880 34 1 4.2348 7.6625 -0.7943 35 1 5.7437 6.7509 -1.0406 36 1 5.3029 8.2470 -2.8495 37 1 2.6933 5.3988 1.5616 38 1 5.1061 6.9714 1.0535 39 1 3.7690 7.6646 2.0022 40 1 7.8195 6.8280 0.9035 41 1 3.9208 4.0250 2.1183 42 1 5.1911 3.8270 3.4407 43 1 3.8837 5.4076 4.9327 44 1 2.6136 5.6059 3.6104 45 1 1.3343 4.5114 -0.0011 46 1 0.2130 2.3202 -0.0014 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602797970.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:32:37 Heat of formation + Delta-G solvation = -50.035625 kcal Electronic energy + Delta-G solvation = -26146.868460 eV Core-core repulsion = 22616.005173 eV Total energy + Delta-G solvation = -3530.863287 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.178 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.29776 -40.02735 -38.31306 -37.75182 -35.67816 -34.22074 -32.03477 -31.82636 -30.79902 -28.42567 -27.85443 -26.51166 -24.73031 -23.62901 -22.91624 -22.61754 -21.23833 -20.54213 -19.11968 -18.52751 -17.90754 -17.25153 -17.17142 -16.61162 -16.57116 -16.28196 -15.85585 -15.48794 -15.21356 -14.83944 -14.53558 -14.49541 -14.25998 -13.94969 -13.87102 -13.54066 -13.16916 -12.95752 -12.87912 -12.76346 -12.55548 -12.48628 -12.24409 -12.07095 -11.97366 -11.80302 -11.70334 -11.53561 -11.35981 -11.07965 -10.74225 -10.57749 -9.92229 -9.79902 -9.16631 -9.00208 -8.09257 -6.12664 0.41536 0.45436 1.39324 1.45821 1.54726 2.41017 2.42508 2.79243 2.96740 3.36976 3.58291 3.66251 3.91521 3.94248 4.02099 4.30039 4.34847 4.37703 4.43314 4.48633 4.50292 4.56372 4.63293 4.63813 4.69115 4.73338 4.77242 4.88289 4.93894 5.02094 5.09390 5.13089 5.18450 5.30858 5.32201 5.37560 5.40588 5.42480 5.56521 5.63580 5.71328 5.82870 6.03467 6.27428 6.48368 6.52837 6.71704 6.86636 6.92692 7.44842 8.89790 Molecular weight = 305.18amu Principal moments of inertia in cm(-1) A = 0.015003 B = 0.004559 C = 0.003909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.893006 B = 6139.974347 C = 7161.651139 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.335 6.335 3 C 0.115 3.885 4 C -0.160 4.160 5 C -0.080 4.080 6 C -0.128 4.128 7 C 0.140 3.860 8 H 0.055 0.945 9 C -0.085 4.085 10 C 0.085 3.915 11 O -0.592 6.592 12 N -0.673 5.673 13 C 0.078 3.922 14 C 0.006 3.994 15 C -0.521 4.521 16 H 0.041 0.959 17 C 0.042 3.958 18 N -0.880 5.880 19 Si 0.942 3.058 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.274 1.274 23 C -0.209 4.209 24 C -0.202 4.202 25 C -0.071 4.071 26 C -0.203 4.203 27 H 0.065 0.935 28 H 0.119 0.881 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.122 0.878 32 H 0.059 0.941 33 H 0.069 0.931 34 H 0.044 0.956 35 H 0.040 0.960 36 H 0.391 0.609 37 H 0.334 0.666 38 H 0.115 0.885 39 H 0.041 0.959 40 H 0.264 0.736 41 H 0.095 0.905 42 H 0.050 0.950 43 H 0.067 0.933 44 H 0.089 0.911 45 H 0.138 0.862 46 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.152 -7.002 -6.416 14.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.249 6.249 3 C 0.070 3.930 4 C -0.179 4.179 5 C -0.099 4.099 6 C -0.128 4.128 7 C 0.030 3.970 8 H 0.073 0.927 9 C -0.124 4.124 10 C 0.008 3.992 11 O -0.400 6.400 12 N -0.303 5.303 13 C -0.051 4.051 14 C 0.004 3.996 15 C -0.559 4.559 16 H 0.060 0.940 17 C -0.160 4.160 18 N -0.516 5.516 19 Si 0.769 3.231 20 H -0.203 1.203 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.247 4.247 24 C -0.240 4.240 25 C -0.090 4.090 26 C -0.222 4.222 27 H 0.084 0.916 28 H 0.137 0.863 29 H 0.081 0.919 30 H 0.154 0.846 31 H 0.140 0.860 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.063 0.937 35 H 0.058 0.942 36 H 0.240 0.760 37 H 0.153 0.847 38 H 0.132 0.868 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.068 0.932 43 H 0.086 0.914 44 H 0.107 0.893 45 H 0.156 0.844 46 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -11.470 -7.155 -7.197 15.315 hybrid contribution 1.616 0.416 1.552 2.279 sum -9.853 -6.739 -5.645 13.205 Atomic orbital electron populations 1.23344 0.76515 1.05526 1.02255 1.86035 1.23448 1.26649 1.88773 1.19119 0.92317 0.84795 0.96757 1.20500 0.92074 0.98398 1.06893 1.20966 0.99994 0.91481 0.97434 1.19979 0.94419 0.94541 1.03907 1.20247 0.96602 0.87592 0.92566 0.92705 1.21364 1.00369 0.95226 0.95398 1.22120 0.98976 0.95932 0.82169 1.86341 1.79593 1.45232 1.28847 1.60957 1.21444 1.26204 1.21741 1.21885 0.95256 0.93793 0.94149 1.19860 0.93267 0.91196 0.95229 1.20722 0.99627 1.43307 0.92225 0.94034 1.25437 0.99280 0.96050 0.95266 1.69918 1.30674 1.44201 1.06834 0.85775 0.79095 0.79613 0.78668 1.20274 1.21032 1.19969 1.23185 1.03104 0.96294 1.02147 1.22888 0.96647 1.08093 0.96342 1.20965 0.93491 0.98018 0.96489 1.21427 1.01088 0.91454 1.08188 0.91625 0.86255 0.91913 0.84553 0.86005 0.92261 0.91234 0.93741 0.94174 0.76029 0.84661 0.86766 0.94043 0.92645 0.88702 0.93159 0.91410 0.89274 0.84377 0.82976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.81 113.37 1.11 1.37 16 2 O -0.33 -7.91 10.50 -92.46 -0.97 -8.88 16 3 C 0.12 3.07 6.69 22.50 0.15 3.22 16 4 C -0.16 -4.59 9.99 22.36 0.22 -4.37 16 5 C -0.08 -2.54 9.25 22.26 0.21 -2.34 16 6 C -0.13 -4.09 3.06 -19.85 -0.06 -4.15 16 7 C 0.14 5.04 1.31 44.17 0.06 5.10 16 8 H 0.05 2.41 7.01 -2.39 -0.02 2.39 16 9 C -0.09 -2.93 5.23 30.60 0.16 -2.77 16 10 C 0.09 3.04 5.72 71.99 0.41 3.45 16 11 O -0.59 -18.91 13.66 -148.98 -2.04 -20.94 16 12 N -0.67 -24.79 5.67 -495.46 -2.81 -27.60 16 13 C 0.08 3.44 4.94 86.31 0.43 3.86 16 14 C 0.01 0.30 2.25 -52.93 -0.12 0.18 16 15 C -0.52 -27.87 8.99 25.60 0.23 -27.64 16 16 H 0.04 2.30 7.89 -2.92 -0.02 2.27 16 17 C 0.04 2.16 5.09 84.66 0.43 2.59 16 18 N -0.88 -44.93 11.07 21.45 0.24 -44.69 16 19 Si 0.94 41.37 29.58 68.60 2.03 43.40 16 20 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 21 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 22 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 23 C -0.21 -9.35 8.83 30.59 0.27 -9.08 16 24 C -0.20 -8.58 9.51 30.59 0.29 -8.29 16 25 C -0.07 -1.98 8.76 22.25 0.20 -1.78 16 26 C -0.20 -4.95 9.04 22.37 0.20 -4.75 16 27 H 0.07 0.79 7.66 -2.38 -0.02 0.77 16 28 H 0.12 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.06 0.80 7.66 -2.39 -0.02 0.79 16 30 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 31 H 0.12 3.97 8.02 -2.91 -0.02 3.94 16 32 H 0.06 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.07 2.28 8.14 -2.39 -0.02 2.27 16 34 H 0.04 1.64 7.05 -2.39 -0.02 1.62 16 35 H 0.04 1.60 7.83 -2.39 -0.02 1.58 16 36 H 0.39 9.00 9.12 -74.06 -0.68 8.33 16 37 H 0.33 11.96 4.76 -89.69 -0.43 11.53 16 38 H 0.11 5.37 3.29 -2.39 -0.01 5.36 16 39 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 40 H 0.26 12.88 8.32 -92.70 -0.77 12.10 16 41 H 0.09 3.88 3.40 -2.39 -0.01 3.88 16 42 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.07 2.91 8.14 -2.39 -0.02 2.89 16 44 H 0.09 3.34 7.39 -2.38 -0.02 3.33 16 45 H 0.14 3.56 7.68 -2.91 -0.02 3.54 16 46 H 0.15 2.75 6.30 -2.91 -0.02 2.73 16 Total: -1.00 -58.77 360.53 0.54 -58.23 By element: Atomic # 1 Polarization: 45.98 SS G_CDS: -0.10 Total: 45.88 kcal Atomic # 6 Polarization: -49.59 SS G_CDS: 4.19 Total: -45.40 kcal Atomic # 7 Polarization: -69.72 SS G_CDS: -2.57 Total: -72.29 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -3.01 Total: -29.82 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Total: -58.77 0.54 -58.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602797970.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.198 kcal (2) G-P(sol) polarization free energy of solvation -58.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.234 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds