Wall clock time and date at job start Tue Mar 31 2020 10:25:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46905 * 1 3 3 C 1.46893 * 111.00070 * 2 1 4 4 C 1.53001 * 109.47142 * 286.95016 * 3 2 1 5 5 C 1.50702 * 115.55070 * 150.60263 * 4 3 2 6 6 H 1.08006 * 120.00108 * 114.73108 * 5 4 3 7 7 C 1.37876 * 120.00269 * 294.73015 * 5 4 3 8 8 N 1.31520 * 119.99425 * 351.57406 * 7 5 4 9 9 Si 1.86797 * 120.00365 * 171.57779 * 7 5 4 10 10 H 1.48501 * 109.47272 * 89.99969 * 9 7 5 11 11 H 1.48497 * 109.47040 * 210.00012 * 9 7 5 12 12 H 1.48493 * 109.47044 * 329.99906 * 9 7 5 13 13 C 1.52999 * 117.49788 * 4.89557 * 4 3 2 14 14 C 1.53001 * 117.49996 * 296.27176 * 4 3 2 15 15 C 1.46893 * 110.99702 * 123.95318 * 2 1 3 16 16 H 1.08993 * 109.47564 * 291.63589 * 15 2 1 17 17 C 1.53000 * 109.47233 * 51.64064 * 15 2 1 18 18 C 1.53001 * 109.47654 * 59.99433 * 17 15 2 19 19 C 1.52999 * 109.46725 * 60.00280 * 18 17 15 20 20 H 1.08993 * 109.47624 * 59.99926 * 19 18 17 21 21 C 1.53005 * 109.47162 * 180.02562 * 19 18 17 22 22 F 1.39896 * 109.46958 * 59.99773 * 21 19 18 23 23 F 1.39899 * 109.46997 * 179.97438 * 21 19 18 24 24 F 1.39895 * 109.46892 * 300.00061 * 21 19 18 25 25 C 1.53009 * 109.47183 * 300.00095 * 19 18 17 26 26 C 1.52999 * 109.47031 * 171.63714 * 15 2 1 27 27 H 1.09000 * 109.47304 * 289.26313 * 1 2 3 28 28 H 1.09005 * 109.47106 * 49.25755 * 1 2 3 29 29 H 1.08992 * 109.47456 * 169.25625 * 1 2 3 30 30 H 1.08999 * 109.47328 * 46.94898 * 3 2 1 31 31 H 1.09005 * 109.47322 * 166.95286 * 3 2 1 32 32 H 0.97005 * 119.99416 * 185.00698 * 8 7 5 33 33 H 1.09000 * 117.50043 * 359.97438 * 13 4 3 34 34 H 1.08999 * 117.49800 * 145.02400 * 13 4 3 35 35 H 1.09005 * 117.49878 * 214.98033 * 14 4 3 36 36 H 1.08998 * 117.49899 * 359.97438 * 14 4 3 37 37 H 1.09004 * 109.47233 * 299.99465 * 17 15 2 38 38 H 1.09004 * 109.47181 * 180.02562 * 17 15 2 39 39 H 1.08996 * 109.47386 * 179.97438 * 18 17 15 40 40 H 1.08995 * 109.46871 * 300.00372 * 18 17 15 41 41 H 1.09002 * 109.46585 * 300.00352 * 25 19 18 42 42 H 1.09000 * 109.47106 * 180.02562 * 25 19 18 43 43 H 1.08994 * 109.47499 * 60.00015 * 26 15 2 44 44 H 1.08995 * 109.47371 * 180.02562 * 26 15 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7856 1.9982 -1.3798 5 6 1.6082 3.4947 -1.3938 6 1 2.3469 4.1217 -1.8710 7 6 0.5029 4.0635 -0.7973 8 7 -0.4761 3.2999 -0.3635 9 14 0.3958 5.9185 -0.6055 10 1 -0.2586 6.5031 -1.8035 11 1 -0.4018 6.2458 0.6036 12 1 1.7627 6.4812 -0.4640 13 6 1.0058 1.1842 -2.4143 14 6 2.5181 1.3627 -2.5633 15 6 1.9954 -0.7659 1.1376 16 1 1.7719 -0.2389 2.0651 17 6 1.3424 -2.1493 1.1669 18 6 1.6561 -2.8892 -0.1351 19 6 3.1712 -3.0435 -0.2815 20 1 3.5619 -3.6118 0.5625 21 6 3.4851 -3.7828 -1.5838 22 9 2.9838 -3.0529 -2.6668 23 9 4.8705 -3.9234 -1.7179 24 9 2.8879 -5.0476 -1.5575 25 6 3.8244 -1.6601 -0.3109 26 6 3.5105 -0.9203 0.9911 27 1 -0.3634 0.3390 0.9701 28 1 -0.3633 0.6707 -0.7786 29 1 -0.3634 -1.0096 -0.1916 30 1 1.4708 1.9620 0.7509 31 1 3.0604 1.3518 0.2320 32 1 -1.2849 3.7023 -0.0102 33 1 0.6426 0.2020 -2.1120 34 1 0.3641 1.7311 -3.1052 35 1 2.8712 2.0269 -3.3521 36 1 3.1497 0.4982 -2.3588 37 1 0.2629 -2.0394 1.2712 38 1 1.7327 -2.7175 2.0113 39 1 1.1913 -3.8748 -0.1140 40 1 1.2655 -2.3208 -0.9791 41 1 3.4337 -1.0918 -1.1550 42 1 4.9037 -1.7701 -0.4156 43 1 3.9758 0.0651 0.9702 44 1 3.9011 -1.4890 1.8349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602827165.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:25:09 Heat of formation + Delta-G solvation = -131.628932 kcal Electronic energy + Delta-G solvation = -27710.824875 eV Core-core repulsion = 23634.566696 eV Total energy + Delta-G solvation = -4076.258179 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 305.166 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -49.98460 -47.50828 -47.39963 -39.42625 -36.77220 -34.15433 -31.95447 -31.00978 -30.22352 -26.88876 -25.55849 -25.20584 -23.08924 -22.52132 -21.25640 -20.81368 -19.13442 -18.56176 -18.13476 -17.85228 -17.41424 -16.16170 -15.40913 -15.02799 -14.64154 -14.52567 -14.36426 -14.25085 -13.90881 -13.88822 -13.61572 -13.60043 -13.30553 -13.22779 -12.80077 -12.36759 -12.11577 -11.95162 -11.82772 -11.67626 -11.32333 -11.07850 -11.04093 -10.93804 -10.84526 -10.73443 -10.40637 -10.34135 -10.12996 -9.79740 -9.75261 -9.09347 -8.88201 -8.39713 -7.86593 -7.38388 -6.02694 -4.05806 2.89311 3.27573 3.35230 3.39114 3.90438 4.11416 4.17745 4.39211 4.67561 4.83060 4.87023 5.13603 5.24130 5.33270 5.36120 5.46158 5.50952 5.56862 5.63451 5.75412 5.91981 6.02944 6.13621 6.27060 6.28416 6.30232 6.36984 6.45482 6.47010 6.56652 6.58038 6.73065 6.91456 6.99926 7.12748 7.25481 7.36373 7.58601 7.67967 7.86883 7.99464 8.08616 8.56755 8.94709 9.56980 11.03941 Molecular weight = 305.17amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.004383 C = 0.004164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.875814 B = 6387.109250 C = 6722.844649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.527 5.527 3 C 0.099 3.901 4 C 0.052 3.948 5 C -0.494 4.494 6 H 0.057 0.943 7 C 0.073 3.927 8 N -0.876 5.876 9 Si 0.886 3.114 10 H -0.282 1.282 11 H -0.287 1.287 12 H -0.274 1.274 13 C -0.171 4.171 14 C -0.204 4.204 15 C 0.077 3.923 16 H 0.036 0.964 17 C -0.107 4.107 18 C -0.110 4.110 19 C -0.123 4.123 20 H 0.102 0.898 21 C 0.451 3.549 22 F -0.176 7.176 23 F -0.189 7.189 24 F -0.191 7.191 25 C -0.112 4.112 26 C -0.105 4.105 27 H 0.013 0.987 28 H 0.108 0.892 29 H 0.042 0.958 30 H 0.046 0.954 31 H 0.049 0.951 32 H 0.258 0.742 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.067 0.933 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.236 -13.838 3.289 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.252 5.252 3 C -0.028 4.028 4 C 0.051 3.949 5 C -0.532 4.532 6 H 0.075 0.925 7 C -0.130 4.130 8 N -0.512 5.512 9 Si 0.714 3.286 10 H -0.208 1.208 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.209 4.209 14 C -0.241 4.241 15 C -0.032 4.032 16 H 0.054 0.946 17 C -0.145 4.145 18 C -0.148 4.148 19 C -0.142 4.142 20 H 0.120 0.880 21 C 0.397 3.603 22 F -0.157 7.157 23 F -0.171 7.171 24 F -0.172 7.172 25 C -0.149 4.149 26 C -0.143 4.143 27 H 0.032 0.968 28 H 0.126 0.874 29 H 0.061 0.939 30 H 0.064 0.936 31 H 0.067 0.933 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.111 0.889 41 H 0.116 0.884 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.244 -14.074 2.995 15.315 hybrid contribution -0.386 1.239 0.628 1.442 sum 4.858 -12.835 3.623 14.193 Atomic orbital electron populations 1.22595 0.87317 1.00405 1.02118 1.62152 1.08102 1.15350 1.39604 1.21676 0.96772 0.85427 0.98969 1.18798 0.98021 0.92363 0.85713 1.20548 1.07208 0.89675 1.35771 0.92500 1.24929 0.95731 0.97430 0.94931 1.69949 1.05232 1.34398 1.41659 0.86696 0.78066 0.86311 0.77566 1.20808 1.21319 1.19908 1.22876 0.91862 1.01058 1.05103 1.22817 0.95526 1.02082 1.03676 1.21600 0.94255 0.93951 0.93356 0.94647 1.21556 1.01145 0.95381 0.96377 1.21501 0.91581 1.00722 1.00948 1.22448 1.00705 0.98666 0.92412 0.87960 1.20788 0.73797 0.77495 0.88237 1.93208 1.87179 1.77027 1.58313 1.93149 1.31380 1.95909 1.96651 1.93143 1.83801 1.43349 1.96920 1.21536 0.99247 0.92745 1.01380 1.21531 0.95744 1.00712 0.96294 0.96840 0.87392 0.93907 0.93605 0.93274 0.93208 0.89697 0.91745 0.91717 0.91430 0.91070 0.92169 0.91908 0.88903 0.88408 0.91902 0.90770 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 7.23 60.07 0.43 0.87 16 2 N -0.53 -9.30 2.24 -234.90 -0.53 -9.82 16 3 C 0.10 2.08 4.84 -3.83 -0.02 2.06 16 4 C 0.05 1.22 1.65 -155.66 -0.26 0.96 16 5 C -0.49 -13.07 8.81 -34.44 -0.30 -13.37 16 6 H 0.06 1.53 7.83 -52.48 -0.41 1.12 16 7 C 0.07 1.91 5.18 -17.82 -0.09 1.82 16 8 N -0.88 -23.24 12.36 55.43 0.69 -22.55 16 9 Si 0.89 20.58 29.55 -169.99 -5.02 15.56 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 13 C -0.17 -3.88 8.01 -26.73 -0.21 -4.09 16 14 C -0.20 -4.42 9.92 -26.73 -0.27 -4.69 16 15 C 0.08 1.12 2.26 -67.72 -0.15 0.97 16 16 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 17 C -0.11 -1.30 4.90 -26.73 -0.13 -1.43 16 18 C -0.11 -1.34 4.64 -26.73 -0.12 -1.46 16 19 C -0.12 -1.43 2.17 -90.61 -0.20 -1.62 16 20 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 21 C 0.45 5.77 2.69 37.16 0.10 5.87 16 22 F -0.18 -2.60 16.28 2.25 0.04 -2.57 16 23 F -0.19 -2.47 16.80 2.25 0.04 -2.43 16 24 F -0.19 -2.43 16.80 2.25 0.04 -2.39 16 25 C -0.11 -1.44 4.80 -26.72 -0.13 -1.57 16 26 C -0.11 -1.36 5.24 -26.73 -0.14 -1.50 16 27 H 0.01 0.26 8.11 -51.93 -0.42 -0.16 16 28 H 0.11 2.37 5.01 -51.93 -0.26 2.11 16 29 H 0.04 0.69 6.05 -51.93 -0.31 0.38 16 30 H 0.05 1.11 7.24 -51.93 -0.38 0.73 16 31 H 0.05 0.99 5.83 -51.93 -0.30 0.68 16 32 H 0.26 6.66 8.32 -40.82 -0.34 6.32 16 33 H 0.08 1.82 5.30 -51.93 -0.28 1.55 16 34 H 0.06 1.57 8.14 -51.93 -0.42 1.15 16 35 H 0.06 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.07 1.36 6.69 -51.93 -0.35 1.01 16 37 H 0.07 0.89 6.47 -51.93 -0.34 0.56 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.69 7.80 -51.93 -0.41 0.28 16 40 H 0.09 1.34 6.66 -51.93 -0.35 1.00 16 41 H 0.10 1.53 5.81 -51.93 -0.30 1.23 16 42 H 0.06 0.75 7.80 -51.93 -0.41 0.35 16 43 H 0.07 1.05 6.21 -51.93 -0.32 0.72 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 337.65 15.07 5.09 5.09 Total: -1.00 -25.89 337.65 -7.65 -33.54 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -6.49 Total: 2.75 kcal Atomic # 6 Polarization: -15.69 SS G_CDS: -1.49 Total: -17.18 kcal Atomic # 7 Polarization: -32.53 SS G_CDS: 0.16 Total: -32.37 kcal Atomic # 9 Polarization: -7.49 SS G_CDS: 0.11 Total: -7.38 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -25.89 -7.65 -33.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602827165.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.087 kcal (2) G-P(sol) polarization free energy of solvation -25.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds